Wall clock time and date at job start Tue Mar 31 2020 12:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47328 * 2 1 4 4 C 1.52999 * 109.46119 * 299.34263 * 3 2 1 5 5 O 1.42902 * 109.47089 * 305.27352 * 4 3 2 6 6 C 1.53041 * 109.45996 * 179.36732 * 3 2 1 7 7 C 1.53166 * 109.32679 * 301.35988 * 6 3 2 8 8 N 1.46928 * 108.76996 * 305.35216 * 7 6 3 9 9 C 1.34775 * 120.63267 * 233.63205 * 8 7 6 10 10 O 1.21581 * 119.99850 * 357.85064 * 9 8 7 11 11 C 1.47642 * 119.99719 * 177.85057 * 9 8 7 12 12 C 1.40013 * 119.89695 * 33.02175 * 11 9 8 13 13 C 1.36317 * 120.10966 * 179.71560 * 12 11 9 14 14 C 1.40885 * 119.88630 * 0.52615 * 13 12 11 15 15 C 1.41118 * 120.10011 * 179.71849 * 14 13 12 16 16 H 1.08006 * 119.99532 * 155.84942 * 15 14 13 17 17 C 1.40216 * 120.00117 * 335.85074 * 15 14 13 18 18 N 1.30647 * 120.00230 * 330.84603 * 17 15 14 19 19 Si 1.86806 * 120.00116 * 150.84428 * 17 15 14 20 20 H 1.48497 * 109.47025 * 94.98080 * 19 17 15 21 21 H 1.48495 * 109.47154 * 214.98602 * 19 17 15 22 22 H 1.48500 * 109.46567 * 334.98444 * 19 17 15 23 23 C 1.40881 * 119.79782 * 359.74633 * 14 13 12 24 24 C 1.36323 * 119.89112 * 359.97438 * 23 14 13 25 25 C 1.46927 * 118.73343 * 53.61148 * 8 7 6 26 26 C 1.53046 * 109.45904 * 59.31362 * 3 2 1 27 27 H 1.08996 * 109.47683 * 179.04824 * 1 2 3 28 28 H 1.09004 * 109.46912 * 299.04482 * 1 2 3 29 29 H 1.08999 * 109.47492 * 59.04244 * 1 2 3 30 30 H 1.09000 * 109.46982 * 120.00361 * 2 1 3 31 31 H 1.08997 * 109.46564 * 240.00078 * 2 1 3 32 32 H 1.09000 * 109.47236 * 65.27788 * 4 3 2 33 33 H 1.09008 * 109.47146 * 185.27607 * 4 3 2 34 34 H 0.96701 * 114.00104 * 180.02562 * 5 4 3 35 35 H 1.08995 * 109.49793 * 61.30180 * 6 3 2 36 36 H 1.09000 * 109.49545 * 181.39696 * 6 3 2 37 37 H 1.09005 * 109.58705 * 185.56956 * 7 6 3 38 38 H 1.09000 * 109.70773 * 65.21435 * 7 6 3 39 39 H 1.08001 * 119.94661 * 359.97438 * 12 11 9 40 40 H 1.07992 * 120.05421 * 180.29226 * 13 12 11 41 41 H 0.97000 * 120.00453 * 179.97438 * 18 17 15 42 42 H 1.08000 * 120.06053 * 179.97438 * 23 14 13 43 43 H 1.08003 * 119.94584 * 180.02562 * 24 23 14 44 44 H 1.08998 * 109.58458 * 186.60275 * 25 8 7 45 45 H 1.08996 * 109.58704 * 66.18106 * 25 8 7 46 46 H 1.08998 * 109.49634 * 178.60652 * 26 3 2 47 47 H 1.09001 * 109.49751 * 298.66932 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5435 2.1587 -1.2575 5 8 1.9285 1.4128 -2.4140 6 6 3.5703 1.4421 0.0159 7 6 4.0642 0.6944 1.2581 8 7 3.4488 1.2970 2.4485 9 6 4.2113 1.7209 3.4757 10 8 5.4173 1.5708 3.4400 11 6 3.5821 2.3674 4.6444 12 6 2.3046 1.9706 5.0578 13 6 1.7220 2.5606 6.1398 14 6 2.4029 3.5790 6.8356 15 6 1.8015 4.1970 7.9527 16 1 2.4165 4.6675 8.7056 17 6 0.4056 4.2000 8.0852 18 7 -0.3517 4.1790 7.0208 19 14 -0.3714 4.2342 9.7836 20 1 -0.6873 5.6367 10.1553 21 1 -1.6206 3.4315 9.7727 22 1 0.5764 3.6614 10.7730 23 6 3.6858 3.9789 6.4124 24 6 4.2627 3.3790 5.3327 25 6 1.9863 1.4291 2.4973 26 6 1.5157 2.1686 1.2410 27 1 -0.3634 -1.0275 -0.0171 28 1 -0.3633 0.4989 0.8985 29 1 -0.3634 0.5286 -0.8812 30 1 1.8933 -0.5139 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 0.4571 2.2414 -1.2235 33 1 1.9824 3.1553 -1.3052 34 1 1.6466 1.8093 -3.2496 35 1 3.9434 0.9453 -0.8796 36 1 3.9341 2.4693 0.0410 37 1 5.1490 0.7760 1.3266 38 1 3.7803 -0.3559 1.1919 39 1 1.7817 1.1928 4.5212 40 1 0.7386 2.2505 6.4607 41 1 -1.3173 4.1808 7.1124 42 1 4.2114 4.7594 6.9424 43 1 5.2463 3.6846 5.0078 44 1 1.7000 1.9955 3.3835 45 1 1.5309 0.4394 2.5309 46 1 1.8988 3.1890 1.2544 47 1 0.4261 2.1894 1.2171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270865920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:30 Heat of formation + Delta-G solvation = -63.399413 kcal Electronic energy + Delta-G solvation = -27410.679027 eV Core-core repulsion = 23751.010102 eV Total energy + Delta-G solvation = -3659.668925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.38884 -38.56776 -37.10602 -36.18762 -34.07077 -33.78458 -31.71678 -30.27012 -29.87007 -29.53010 -27.34877 -25.81348 -24.01963 -23.26903 -22.87768 -21.31309 -20.90279 -19.36667 -17.84635 -17.52948 -17.45506 -16.42357 -15.84550 -15.52576 -15.25488 -15.05315 -14.60732 -14.44014 -14.12309 -13.74696 -13.57163 -13.25165 -13.07137 -12.89160 -12.56217 -12.32732 -12.27026 -12.08448 -12.06968 -11.68636 -11.60609 -11.36630 -11.29775 -11.12913 -10.94464 -10.88867 -10.65338 -10.39552 -10.28198 -10.18793 -10.06725 -9.94976 -9.48039 -9.21010 -8.84506 -8.13160 -7.66355 -7.59877 -7.12897 -4.57000 2.30520 2.87797 2.94173 2.97128 3.02462 3.57987 3.72497 3.78266 4.08192 4.43685 4.65732 4.76075 4.85205 5.13001 5.22323 5.33050 5.35493 5.40927 5.44463 5.50579 5.55227 5.63394 5.67716 5.78308 5.88974 5.94171 6.01304 6.02684 6.08040 6.13532 6.20057 6.26009 6.27278 6.30828 6.39114 6.52331 6.75252 6.80346 6.95087 7.08995 7.10561 7.42111 7.47071 7.62099 7.76518 7.84261 8.04324 8.14805 8.36496 8.61501 8.74531 9.04209 9.80669 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017264 B = 0.003487 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.489036 B = 8028.117347 C = 9091.938188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.054 4.054 4 C 0.085 3.915 5 O -0.569 6.569 6 C -0.117 4.117 7 C 0.112 3.888 8 N -0.615 5.615 9 C 0.576 3.424 10 O -0.573 6.573 11 C -0.283 4.283 12 C -0.076 4.076 13 C -0.185 4.185 14 C 0.130 3.870 15 C -0.451 4.451 16 H 0.086 0.914 17 C 0.085 3.915 18 N -0.759 5.759 19 Si 0.902 3.098 20 H -0.267 1.267 21 H -0.272 1.272 22 H -0.256 1.256 23 C -0.238 4.238 24 C -0.023 4.023 25 C 0.079 3.921 26 C -0.126 4.126 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.374 0.626 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.287 0.713 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.132 0.868 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.925 -4.049 -12.889 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.054 4.054 4 C 0.007 3.993 5 O -0.373 6.373 6 C -0.155 4.155 7 C -0.011 4.011 8 N -0.348 5.348 9 C 0.371 3.629 10 O -0.454 6.454 11 C -0.287 4.287 12 C -0.094 4.094 13 C -0.204 4.204 14 C 0.127 3.873 15 C -0.478 4.478 16 H 0.104 0.896 17 C -0.139 4.139 18 N -0.381 5.381 19 Si 0.725 3.275 20 H -0.192 1.192 21 H -0.197 1.197 22 H -0.179 1.179 23 C -0.258 4.258 24 C -0.042 4.042 25 C -0.043 4.043 26 C -0.164 4.164 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.220 0.780 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.149 0.851 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.275 -4.507 -12.545 13.726 hybrid contribution -0.893 0.510 0.117 1.035 sum -4.167 -3.997 -12.428 13.704 Atomic orbital electron populations 1.21862 0.96159 1.01332 1.01729 1.21556 0.95647 0.95501 1.02237 1.20578 0.95713 0.96031 0.93068 1.22272 0.97903 0.93651 0.85453 1.86480 1.81801 1.52910 1.16158 1.21883 0.94411 1.01247 0.98004 1.21470 0.99408 0.95963 0.84248 1.47925 1.06771 1.62501 1.17622 1.18699 0.85820 0.76199 0.82171 1.90628 1.15041 1.58472 1.81252 1.18795 0.98308 1.08989 1.02594 1.20788 0.93308 0.98891 0.96451 1.20763 1.01010 0.99793 0.98846 1.17694 0.90734 0.88797 0.90084 1.19765 0.91305 1.30746 1.05978 0.89593 1.26053 0.97675 0.91511 0.98617 1.69797 1.07043 1.29793 1.31434 0.86390 0.79112 0.79407 0.82583 1.19237 1.19658 1.17915 1.20658 0.99079 1.05088 1.00927 1.20267 0.96574 0.93504 0.93883 1.22713 0.80352 1.00832 1.00450 1.21999 1.00840 0.99776 0.93794 0.93130 0.92363 0.92893 0.91635 0.91362 0.93469 0.93922 0.78007 0.90587 0.91897 0.89493 0.92235 0.87395 0.87353 0.90148 0.88459 0.88627 0.85071 0.92026 0.91340 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.20 37.16 0.34 -1.18 16 2 C -0.11 -1.25 4.04 -26.74 -0.11 -1.36 16 3 C -0.05 -0.62 0.38 -154.47 -0.06 -0.68 16 4 C 0.08 0.84 5.42 37.16 0.20 1.05 16 5 O -0.57 -5.43 12.28 -35.23 -0.43 -5.86 16 6 C -0.12 -1.52 4.82 -26.62 -0.13 -1.65 16 7 C 0.11 1.70 5.95 -3.72 -0.02 1.68 16 8 N -0.61 -10.78 2.97 -173.97 -0.52 -11.30 16 9 C 0.58 12.52 7.43 -12.42 -0.09 12.43 16 10 O -0.57 -13.95 16.19 5.29 0.09 -13.87 16 11 C -0.28 -6.44 5.55 -104.73 -0.58 -7.02 16 12 C -0.08 -1.65 7.36 -39.61 -0.29 -1.94 16 13 C -0.18 -4.41 8.70 -39.27 -0.34 -4.75 16 14 C 0.13 3.26 5.55 -106.80 -0.59 2.67 16 15 C -0.45 -11.09 8.97 -37.75 -0.34 -11.43 16 16 H 0.09 2.04 7.99 -52.48 -0.42 1.62 16 17 C 0.09 1.94 4.84 -17.31 -0.08 1.86 16 18 N -0.76 -17.65 11.68 55.56 0.65 -17.00 16 19 Si 0.90 16.91 29.65 -169.99 -5.04 11.87 16 20 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 21 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 22 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 23 C -0.24 -5.73 9.73 -39.27 -0.38 -6.11 16 24 C -0.02 -0.54 9.53 -39.61 -0.38 -0.92 16 25 C 0.08 1.20 4.43 -3.71 -0.02 1.18 16 26 C -0.13 -1.62 4.49 -26.61 -0.12 -1.74 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.58 6.50 -51.93 -0.34 0.24 16 29 H 0.05 0.50 6.51 -51.93 -0.34 0.16 16 30 H 0.07 0.78 4.98 -51.93 -0.26 0.53 16 31 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 32 H 0.05 0.43 6.71 -51.93 -0.35 0.08 16 33 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.37 1.96 9.12 45.56 0.42 2.37 16 35 H 0.08 0.94 7.80 -51.93 -0.40 0.53 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.45 7.01 -51.93 -0.36 1.09 16 38 H 0.06 0.83 6.69 -51.93 -0.35 0.48 16 39 H 0.11 2.05 5.31 -52.49 -0.28 1.77 16 40 H 0.11 2.59 6.55 -52.49 -0.34 2.25 16 41 H 0.29 5.97 8.29 -40.82 -0.34 5.63 16 42 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 43 H 0.10 2.16 7.96 -52.48 -0.42 1.75 16 44 H 0.13 2.29 3.53 -54.10 -0.19 2.10 16 45 H 0.06 0.85 6.70 -51.93 -0.35 0.50 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.08 0.86 6.51 -51.93 -0.34 0.52 16 LS Contribution 356.81 15.07 5.38 5.38 Total: -1.00 -28.60 356.81 -8.83 -37.42 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -5.96 Total: 11.29 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -2.99 Total: -17.93 kcal Atomic # 7 Polarization: -28.43 SS G_CDS: 0.13 Total: -28.30 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.35 Total: -19.73 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.04 Total: 11.87 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.60 -8.83 -37.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270865920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.977 kcal (2) G-P(sol) polarization free energy of solvation -28.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds