Wall clock time and date at job start Tue Mar 31 2020 12:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47328 * 2 1 4 4 C 1.52999 * 109.46119 * 299.34263 * 3 2 1 5 5 O 1.42902 * 109.47089 * 305.27352 * 4 3 2 6 6 C 1.53041 * 109.45996 * 179.36732 * 3 2 1 7 7 C 1.53166 * 109.32679 * 301.35988 * 6 3 2 8 8 N 1.46928 * 108.76996 * 305.35216 * 7 6 3 9 9 C 1.34775 * 120.63267 * 233.63205 * 8 7 6 10 10 O 1.21581 * 119.99850 * 357.85064 * 9 8 7 11 11 C 1.47642 * 119.99719 * 177.85057 * 9 8 7 12 12 C 1.40013 * 119.89695 * 33.02175 * 11 9 8 13 13 C 1.36317 * 120.10966 * 179.71560 * 12 11 9 14 14 C 1.40885 * 119.88630 * 0.52615 * 13 12 11 15 15 C 1.41118 * 120.10011 * 179.71849 * 14 13 12 16 16 H 1.08006 * 119.99532 * 155.84942 * 15 14 13 17 17 C 1.40216 * 120.00117 * 335.85074 * 15 14 13 18 18 N 1.30647 * 120.00230 * 330.84603 * 17 15 14 19 19 Si 1.86806 * 120.00116 * 150.84428 * 17 15 14 20 20 H 1.48497 * 109.47025 * 94.98080 * 19 17 15 21 21 H 1.48495 * 109.47154 * 214.98602 * 19 17 15 22 22 H 1.48500 * 109.46567 * 334.98444 * 19 17 15 23 23 C 1.40881 * 119.79782 * 359.74633 * 14 13 12 24 24 C 1.36323 * 119.89112 * 359.97438 * 23 14 13 25 25 C 1.46927 * 118.73343 * 53.61148 * 8 7 6 26 26 C 1.53046 * 109.45904 * 59.31362 * 3 2 1 27 27 H 1.08996 * 109.47683 * 179.04824 * 1 2 3 28 28 H 1.09004 * 109.46912 * 299.04482 * 1 2 3 29 29 H 1.08999 * 109.47492 * 59.04244 * 1 2 3 30 30 H 1.09000 * 109.46982 * 120.00361 * 2 1 3 31 31 H 1.08997 * 109.46564 * 240.00078 * 2 1 3 32 32 H 1.09000 * 109.47236 * 65.27788 * 4 3 2 33 33 H 1.09008 * 109.47146 * 185.27607 * 4 3 2 34 34 H 0.96701 * 114.00104 * 180.02562 * 5 4 3 35 35 H 1.08995 * 109.49793 * 61.30180 * 6 3 2 36 36 H 1.09000 * 109.49545 * 181.39696 * 6 3 2 37 37 H 1.09005 * 109.58705 * 185.56956 * 7 6 3 38 38 H 1.09000 * 109.70773 * 65.21435 * 7 6 3 39 39 H 1.08001 * 119.94661 * 359.97438 * 12 11 9 40 40 H 1.07992 * 120.05421 * 180.29226 * 13 12 11 41 41 H 0.97000 * 120.00453 * 179.97438 * 18 17 15 42 42 H 1.08000 * 120.06053 * 179.97438 * 23 14 13 43 43 H 1.08003 * 119.94584 * 180.02562 * 24 23 14 44 44 H 1.08998 * 109.58458 * 186.60275 * 25 8 7 45 45 H 1.08996 * 109.58704 * 66.18106 * 25 8 7 46 46 H 1.08998 * 109.49634 * 178.60652 * 26 3 2 47 47 H 1.09001 * 109.49751 * 298.66932 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5435 2.1587 -1.2575 5 8 1.9285 1.4128 -2.4140 6 6 3.5703 1.4421 0.0159 7 6 4.0642 0.6944 1.2581 8 7 3.4488 1.2970 2.4485 9 6 4.2113 1.7209 3.4757 10 8 5.4173 1.5708 3.4400 11 6 3.5821 2.3674 4.6444 12 6 2.3046 1.9706 5.0578 13 6 1.7220 2.5606 6.1398 14 6 2.4029 3.5790 6.8356 15 6 1.8015 4.1970 7.9527 16 1 2.4165 4.6675 8.7056 17 6 0.4056 4.2000 8.0852 18 7 -0.3517 4.1790 7.0208 19 14 -0.3714 4.2342 9.7836 20 1 -0.6873 5.6367 10.1553 21 1 -1.6206 3.4315 9.7727 22 1 0.5764 3.6614 10.7730 23 6 3.6858 3.9789 6.4124 24 6 4.2627 3.3790 5.3327 25 6 1.9863 1.4291 2.4973 26 6 1.5157 2.1686 1.2410 27 1 -0.3634 -1.0275 -0.0171 28 1 -0.3633 0.4989 0.8985 29 1 -0.3634 0.5286 -0.8812 30 1 1.8933 -0.5139 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 0.4571 2.2414 -1.2235 33 1 1.9824 3.1553 -1.3052 34 1 1.6466 1.8093 -3.2496 35 1 3.9434 0.9453 -0.8796 36 1 3.9341 2.4693 0.0410 37 1 5.1490 0.7760 1.3266 38 1 3.7803 -0.3559 1.1919 39 1 1.7817 1.1928 4.5212 40 1 0.7386 2.2505 6.4607 41 1 -1.3173 4.1808 7.1124 42 1 4.2114 4.7594 6.9424 43 1 5.2463 3.6846 5.0078 44 1 1.7000 1.9955 3.3835 45 1 1.5309 0.4394 2.5309 46 1 1.8988 3.1890 1.2544 47 1 0.4261 2.1894 1.2171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270865920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:28 Heat of formation + Delta-G solvation = -80.043069 kcal Electronic energy + Delta-G solvation = -27411.400750 eV Core-core repulsion = 23751.010102 eV Total energy + Delta-G solvation = -3660.390648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.70705 -39.95574 -38.81327 -37.21547 -35.75602 -35.06139 -33.06666 -31.55036 -31.36257 -31.17025 -28.57070 -27.41168 -25.03506 -24.53810 -24.11860 -22.88926 -22.59775 -20.85005 -19.38389 -18.95889 -18.25180 -17.87260 -17.40603 -16.95706 -16.47262 -16.23541 -15.85069 -15.81552 -15.40895 -15.29984 -14.88465 -14.58373 -14.40998 -14.23373 -14.12860 -13.78997 -13.47558 -13.41539 -13.19639 -13.03536 -12.89069 -12.79270 -12.70873 -12.58787 -12.32386 -12.15583 -11.94674 -11.81567 -11.47564 -11.25342 -11.21923 -11.14325 -10.94969 -10.73960 -10.52846 -9.62965 -9.47112 -9.37844 -8.86036 -6.42648 0.53437 1.11711 1.37370 1.43464 1.55841 2.01049 2.16278 2.20436 2.67535 3.32126 3.63273 3.67017 3.75531 3.92724 4.03973 4.13421 4.23015 4.30737 4.33134 4.39903 4.42829 4.55577 4.60481 4.64921 4.69630 4.72925 4.82705 4.88088 4.92650 4.93188 5.02505 5.05273 5.06915 5.12770 5.15597 5.28073 5.30576 5.37794 5.41538 5.57745 5.60191 5.70403 5.81978 5.94540 6.00279 6.22752 6.52425 6.54397 6.77470 6.90139 6.97478 7.36719 8.11350 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017264 B = 0.003487 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.489036 B = 8028.117347 C = 9091.938188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C -0.051 4.051 4 C 0.090 3.910 5 O -0.581 6.581 6 C -0.109 4.109 7 C 0.110 3.890 8 N -0.606 5.606 9 C 0.571 3.429 10 O -0.608 6.608 11 C -0.294 4.294 12 C -0.061 4.061 13 C -0.202 4.202 14 C 0.105 3.895 15 C -0.482 4.482 16 H 0.083 0.917 17 C 0.052 3.948 18 N -0.781 5.781 19 Si 0.976 3.024 20 H -0.260 1.260 21 H -0.259 1.259 22 H -0.261 1.261 23 C -0.255 4.255 24 C -0.033 4.033 25 C 0.076 3.924 26 C -0.120 4.120 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.394 0.606 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.138 0.862 40 H 0.105 0.895 41 H 0.300 0.700 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.084 0.916 46 H 0.053 0.947 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.213 -4.880 -13.975 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.052 4.052 4 C 0.012 3.988 5 O -0.389 6.389 6 C -0.147 4.147 7 C -0.012 4.012 8 N -0.337 5.337 9 C 0.365 3.635 10 O -0.492 6.492 11 C -0.298 4.298 12 C -0.079 4.079 13 C -0.221 4.221 14 C 0.102 3.898 15 C -0.508 4.508 16 H 0.101 0.899 17 C -0.170 4.170 18 N -0.403 5.403 19 Si 0.795 3.205 20 H -0.184 1.184 21 H -0.183 1.183 22 H -0.184 1.184 23 C -0.274 4.274 24 C -0.052 4.052 25 C -0.045 4.045 26 C -0.158 4.158 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.243 0.757 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.155 0.845 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.127 0.873 45 H 0.102 0.898 46 H 0.072 0.928 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.594 -5.337 -13.691 15.723 hybrid contribution -0.178 0.761 0.329 0.848 sum -5.773 -4.576 -13.362 15.258 Atomic orbital electron populations 1.21845 0.94960 1.01957 1.02089 1.21495 0.96636 0.94611 1.01699 1.20540 0.94389 0.96694 0.93544 1.22137 0.98641 0.93145 0.84868 1.86423 1.82120 1.53303 1.17046 1.21810 0.95714 1.00128 0.97051 1.21639 0.98301 0.97200 0.84066 1.47942 1.07671 1.61002 1.17102 1.18592 0.85555 0.76459 0.82861 1.90601 1.16398 1.60145 1.82058 1.19035 0.98736 1.08822 1.03180 1.21021 0.92721 0.98757 0.95442 1.20786 1.01138 1.00336 0.99854 1.18020 0.91317 0.89608 0.90840 1.20013 0.92695 1.31927 1.06209 0.89864 1.26806 0.97322 0.90560 1.02352 1.69784 1.08010 1.29188 1.33348 0.85292 0.78200 0.79746 0.77241 1.18411 1.18322 1.18432 1.20777 0.99384 1.05764 1.01518 1.20398 0.96790 0.94029 0.94021 1.22776 0.78822 1.02019 1.00926 1.21940 1.02078 0.98657 0.93152 0.92488 0.92380 0.92094 0.92526 0.91505 0.91970 0.94031 0.75713 0.89466 0.93240 0.91447 0.90336 0.84477 0.87691 0.88871 0.88082 0.88564 0.87255 0.89780 0.92790 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.20 71.98 0.66 -1.82 16 2 C -0.11 -2.07 4.04 30.59 0.12 -1.94 16 3 C -0.05 -1.07 0.38 -52.15 -0.02 -1.09 16 4 C 0.09 1.52 5.42 71.98 0.39 1.91 16 5 O -0.58 -9.29 12.28 -148.98 -1.83 -11.12 16 6 C -0.11 -2.67 4.82 30.66 0.15 -2.53 16 7 C 0.11 3.24 5.95 86.35 0.51 3.75 16 8 N -0.61 -20.91 2.97 -822.58 -2.44 -23.35 16 9 C 0.57 25.15 7.43 86.73 0.64 25.79 16 10 O -0.61 -30.35 16.19 -3.97 -0.06 -30.42 16 11 C -0.29 -13.63 5.55 -19.93 -0.11 -13.74 16 12 C -0.06 -2.67 7.36 22.25 0.16 -2.51 16 13 C -0.20 -9.78 8.70 22.47 0.20 -9.58 16 14 C 0.11 5.43 5.55 -21.28 -0.12 5.31 16 15 C -0.48 -24.20 8.97 23.46 0.21 -23.99 16 16 H 0.08 4.07 7.99 -2.91 -0.02 4.04 16 17 C 0.05 2.35 4.84 85.35 0.41 2.76 16 18 N -0.78 -36.04 11.68 21.87 0.26 -35.78 16 19 Si 0.98 34.02 29.65 68.60 2.03 36.05 16 20 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 21 H -0.26 -8.46 7.11 99.48 0.71 -7.75 16 22 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 23 C -0.26 -12.76 9.73 22.47 0.22 -12.55 16 24 C -0.03 -1.62 9.53 22.25 0.21 -1.41 16 25 C 0.08 2.19 4.43 86.36 0.38 2.57 16 26 C -0.12 -2.85 4.49 30.67 0.14 -2.72 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.95 6.50 -2.38 -0.02 0.94 16 29 H 0.06 0.91 6.51 -2.39 -0.02 0.89 16 30 H 0.06 1.19 4.98 -2.39 -0.01 1.18 16 31 H 0.07 1.34 7.53 -2.39 -0.02 1.33 16 32 H 0.06 0.89 6.71 -2.39 -0.02 0.87 16 33 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.39 2.87 9.12 -74.06 -0.68 2.19 16 35 H 0.09 1.98 7.80 -2.39 -0.02 1.96 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 2.27 7.01 -2.38 -0.02 2.25 16 38 H 0.08 2.04 6.69 -2.39 -0.02 2.03 16 39 H 0.14 5.06 5.31 -2.91 -0.02 5.05 16 40 H 0.11 5.07 6.55 -2.91 -0.02 5.05 16 41 H 0.30 12.13 8.29 -92.71 -0.77 11.36 16 42 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 43 H 0.10 4.56 7.96 -2.91 -0.02 4.54 16 44 H 0.11 3.71 3.53 -4.43 -0.02 3.69 16 45 H 0.08 2.10 6.70 -2.39 -0.02 2.08 16 46 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.10 1.93 6.51 -2.39 -0.02 1.91 16 Total: -1.00 -62.62 356.81 2.44 -60.18 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: 0.32 Total: 36.19 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: 4.17 Total: -31.76 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -2.19 Total: -59.13 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -1.89 Total: -41.53 kcal Atomic # 14 Polarization: 34.02 SS G_CDS: 2.03 Total: 36.05 kcal Total: -62.62 2.44 -60.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270865920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.860 kcal (2) G-P(sol) polarization free energy of solvation -62.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds