Wall clock time and date at job start Tue Mar 31 2020 12:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47416 * 2 1 4 4 C 1.50699 * 109.46942 * 120.00271 * 2 1 3 5 5 C 1.38545 * 119.80547 * 299.99779 * 4 2 1 6 6 C 1.37792 * 120.29884 * 180.02562 * 5 4 2 7 7 C 1.39705 * 119.90910 * 0.23088 * 6 5 4 8 8 C 1.47539 * 120.19308 * 179.74934 * 7 6 5 9 9 O 1.21585 * 119.99901 * 145.96441 * 8 7 6 10 10 N 1.34771 * 119.99512 * 325.96969 * 8 7 6 11 11 C 1.46498 * 120.00634 * 6.78405 * 10 8 7 12 12 C 1.50701 * 109.46863 * 103.60675 * 11 10 8 13 13 H 1.07997 * 120.00457 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99734 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99949 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00250 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47255 * 89.99364 * 16 14 12 18 18 H 1.48499 * 109.46910 * 210.00035 * 16 14 12 19 19 H 1.48501 * 109.46781 * 329.99751 * 16 14 12 20 20 C 1.46503 * 119.99533 * 186.78548 * 10 8 7 21 21 C 1.52998 * 109.46979 * 85.10272 * 20 10 8 22 22 C 1.53006 * 117.50100 * 247.06762 * 21 20 10 23 23 C 1.52999 * 117.50202 * 178.41035 * 21 20 10 24 24 C 1.40141 * 119.61723 * 359.49566 * 7 6 5 25 25 O 1.35651 * 120.15260 * 180.26845 * 24 7 6 26 26 C 1.38058 * 119.80388 * 120.02143 * 4 2 1 27 27 H 1.09000 * 109.47528 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47081 * 299.99533 * 1 2 3 29 29 H 1.08997 * 109.47396 * 60.00036 * 1 2 3 30 30 H 1.09005 * 109.46803 * 240.00400 * 2 1 3 31 31 H 1.08999 * 109.47444 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47387 * 300.00750 * 3 2 1 33 33 H 1.09007 * 109.47091 * 59.99942 * 3 2 1 34 34 H 1.07999 * 119.85115 * 0.02562 * 5 4 2 35 35 H 1.08003 * 120.04442 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.47336 * 223.60894 * 11 10 8 37 37 H 1.09003 * 109.47143 * 343.60927 * 11 10 8 38 38 H 0.96996 * 120.00134 * 180.02562 * 15 14 12 39 39 H 1.09003 * 109.47222 * 205.09543 * 20 10 8 40 40 H 1.09000 * 109.47604 * 325.10101 * 20 10 8 41 41 H 1.09001 * 115.55178 * 32.73946 * 21 20 10 42 42 H 1.09004 * 117.49227 * 0.02562 * 22 21 20 43 43 H 1.08997 * 117.49960 * 145.01561 * 22 21 20 44 44 H 1.08998 * 117.50632 * 214.97888 * 23 21 20 45 45 H 1.09007 * 117.49528 * 359.97438 * 23 21 20 46 46 H 0.96699 * 114.00684 * 270.25545 * 25 24 7 47 47 H 1.08002 * 119.96040 * 359.95172 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6951 -0.2337 2.4868 6 6 2.1492 -0.8750 3.6187 7 6 2.9573 -2.0085 3.5002 8 6 3.4515 -2.6969 4.7080 9 8 3.5892 -3.9049 4.7057 10 7 3.7503 -1.9866 5.8136 11 6 3.4457 -0.5547 5.8690 12 6 2.2200 -0.3344 6.7177 13 1 1.7183 -1.1766 7.1708 14 6 1.7390 0.9426 6.9156 15 7 0.6690 1.1349 7.6558 16 14 2.6063 2.3994 6.1313 17 1 2.0266 2.6563 4.7885 18 1 2.4275 3.6006 6.9860 19 1 4.0543 2.0992 5.9961 20 6 4.3797 -2.6465 6.9602 21 6 5.8956 -2.6861 6.7569 22 6 6.5451 -4.0559 6.5499 23 6 6.7418 -3.3069 7.8702 24 6 3.2913 -2.4911 2.2276 25 8 4.0707 -3.5939 2.1000 26 6 2.8261 -1.8323 1.0990 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.0736 0.6447 2.5795 35 1 1.8842 -0.4996 4.5960 36 1 4.2900 -0.0202 6.3044 37 1 3.2613 -0.1832 4.8610 38 1 0.3304 2.0331 7.7948 39 1 4.1496 -2.0919 7.8700 40 1 3.9982 -3.6637 7.0485 41 1 6.3194 -1.8411 6.2143 42 1 5.8922 -4.9288 6.5582 43 1 7.3963 -4.1120 5.8715 44 1 7.7224 -2.8705 8.0599 45 1 6.2185 -3.6867 8.7478 46 1 5.0181 -3.4040 2.0628 47 1 3.0843 -2.1982 0.1162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271359224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:30 Heat of formation + Delta-G solvation = -16.699025 kcal Electronic energy + Delta-G solvation = -27540.858947 eV Core-core repulsion = 23883.215103 eV Total energy + Delta-G solvation = -3657.643844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.28933 -38.62802 -37.21625 -36.73993 -35.27662 -34.26337 -32.56940 -30.56776 -29.23648 -28.38561 -27.16952 -26.46682 -23.65256 -22.71119 -22.24831 -22.05118 -20.74854 -20.13342 -19.05600 -17.32349 -17.10912 -16.72180 -16.20863 -15.63212 -15.41132 -14.65329 -14.59288 -14.39234 -14.14539 -13.96420 -13.78009 -13.42842 -13.37779 -13.19704 -12.73290 -12.40576 -12.30605 -12.12515 -11.78797 -11.76743 -11.44557 -11.29084 -11.23818 -11.18919 -11.03460 -10.94355 -10.80208 -10.49838 -10.41866 -10.14071 -10.02936 -9.67655 -9.62410 -9.04605 -8.88518 -8.35019 -8.29445 -7.74568 -6.33397 -4.36111 1.23755 1.60550 3.08662 3.18561 3.20267 3.36594 3.70334 4.04525 4.14756 4.15936 4.38847 4.75432 4.86082 4.95998 5.04038 5.14220 5.16607 5.23231 5.29951 5.33840 5.41545 5.51628 5.58880 5.70195 5.72937 5.80988 5.83015 5.89285 5.96321 6.04811 6.10786 6.12515 6.20102 6.21885 6.22247 6.35444 6.37171 6.40097 6.57867 6.62383 6.68128 6.72499 6.83684 7.14551 7.24976 7.40368 7.92420 8.05480 8.36985 8.74511 8.92974 9.24751 10.78258 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009534 B = 0.005988 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.227054 B = 4675.134230 C = 6873.924140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.057 4.057 3 C -0.146 4.146 4 C -0.046 4.046 5 C -0.141 4.141 6 C -0.077 4.077 7 C -0.160 4.160 8 C 0.559 3.441 9 O -0.543 6.543 10 N -0.583 5.583 11 C 0.180 3.820 12 C -0.544 4.544 13 H 0.082 0.918 14 C 0.081 3.919 15 N -0.881 5.881 16 Si 0.861 3.139 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.261 1.261 20 C 0.153 3.847 21 C -0.162 4.162 22 C -0.173 4.173 23 C -0.179 4.179 24 C 0.155 3.845 25 O -0.481 6.481 26 C -0.166 4.166 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.126 0.874 35 H 0.187 0.813 36 H 0.028 0.972 37 H 0.057 0.943 38 H 0.269 0.731 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.384 0.616 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.882 -0.466 -11.539 13.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.075 4.075 3 C -0.203 4.203 4 C -0.047 4.047 5 C -0.159 4.159 6 C -0.094 4.094 7 C -0.164 4.164 8 C 0.347 3.653 9 O -0.422 6.422 10 N -0.313 5.313 11 C 0.059 3.941 12 C -0.582 4.582 13 H 0.100 0.900 14 C -0.124 4.124 15 N -0.518 5.518 16 Si 0.687 3.313 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.186 1.186 20 C 0.029 3.971 21 C -0.181 4.181 22 C -0.210 4.210 23 C -0.217 4.217 24 C 0.109 3.891 25 O -0.290 6.290 26 C -0.185 4.185 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.203 0.797 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.240 0.760 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.284 -1.247 -11.425 13.099 hybrid contribution 0.814 1.238 -0.255 1.503 sum 7.098 -0.009 -11.680 13.668 Atomic orbital electron populations 1.21869 0.94152 1.02203 1.02053 1.20149 0.96163 0.96019 0.95165 1.21872 1.01225 0.95103 1.02079 1.19858 0.95606 0.94353 0.94860 1.21017 1.01931 1.01519 0.91459 1.22802 0.92308 0.91746 1.02547 1.20416 1.04394 0.98174 0.93395 1.18034 0.77764 0.86551 0.82930 1.90719 1.54327 1.13480 1.83674 1.47702 1.58700 1.11056 1.13823 1.20622 0.97152 0.77205 0.99080 1.21352 1.10482 0.94816 1.31560 0.89988 1.24896 0.94515 0.98509 0.94524 1.69886 1.22023 1.22548 1.37310 0.87066 0.81170 0.82920 0.80192 1.19249 1.20605 1.18578 1.20847 0.88323 0.98607 0.89281 1.22771 0.95580 0.96905 1.02892 1.22962 1.02838 0.96084 0.99102 1.22909 1.00970 1.04817 0.93004 1.18413 0.94101 0.85896 0.90649 1.84810 1.20421 1.28315 1.95458 1.21094 1.02827 0.96669 0.97899 0.92422 0.92021 0.92505 0.90586 0.92540 0.92464 0.92081 0.85654 0.79699 0.95408 0.92580 0.92108 0.89291 0.90739 0.88195 0.88562 0.89618 0.89212 0.88796 0.76021 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.00 37.16 0.33 -1.21 16 2 C -0.06 -0.63 3.09 -91.78 -0.28 -0.91 16 3 C -0.15 -1.50 9.00 37.15 0.33 -1.17 16 4 C -0.05 -0.66 4.79 -104.58 -0.50 -1.16 16 5 C -0.14 -2.33 8.68 -39.63 -0.34 -2.67 16 6 C -0.08 -1.48 7.42 -39.20 -0.29 -1.77 16 7 C -0.16 -3.16 5.52 -104.84 -0.58 -3.74 16 8 C 0.56 12.03 7.25 -12.47 -0.09 11.94 16 9 O -0.54 -12.69 15.51 -12.90 -0.20 -12.89 16 10 N -0.58 -12.16 2.50 -176.29 -0.44 -12.60 16 11 C 0.18 3.93 3.72 -5.19 -0.02 3.92 16 12 C -0.54 -13.82 8.10 -34.44 -0.28 -14.10 16 13 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 14 C 0.08 2.08 5.46 -17.82 -0.10 1.99 16 15 N -0.88 -24.58 13.96 55.43 0.77 -23.81 16 16 Si 0.86 18.86 27.47 -169.99 -4.67 14.19 16 17 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.26 -5.50 6.54 56.52 0.37 -5.13 16 20 C 0.15 2.86 5.64 -4.04 -0.02 2.84 16 21 C -0.16 -2.58 5.98 -90.62 -0.54 -3.12 16 22 C -0.17 -2.47 10.18 -26.69 -0.27 -2.74 16 23 C -0.18 -2.36 10.25 -26.70 -0.27 -2.63 16 24 C 0.16 2.69 6.68 -38.69 -0.26 2.43 16 25 O -0.48 -7.95 12.10 -36.84 -0.45 -8.40 16 26 C -0.17 -2.45 9.59 -39.47 -0.38 -2.83 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.69 7.37 -51.93 -0.38 0.31 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.75 7.86 -51.93 -0.41 0.34 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.68 7.37 -51.93 -0.38 0.30 16 34 H 0.13 1.93 7.07 -52.49 -0.37 1.56 16 35 H 0.19 4.04 3.85 -52.48 -0.20 3.84 16 36 H 0.03 0.61 7.20 -51.93 -0.37 0.23 16 37 H 0.06 1.20 3.25 -52.13 -0.17 1.03 16 38 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.09 1.69 7.94 -51.93 -0.41 1.28 16 40 H 0.07 1.44 7.23 -51.93 -0.38 1.07 16 41 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 42 H 0.10 1.46 8.04 -51.93 -0.42 1.05 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.38 4.58 9.06 45.56 0.41 4.99 16 47 H 0.13 1.55 7.93 -52.49 -0.42 1.13 16 LS Contribution 378.34 15.07 5.70 5.70 Total: -1.00 -30.09 378.34 -9.31 -39.40 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -6.47 Total: 13.36 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -3.56 Total: -14.96 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.33 Total: -36.41 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.65 Total: -21.29 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.67 Total: 14.19 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.09 -9.31 -39.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271359224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.703 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds