Wall clock time and date at job start Tue Mar 31 2020 12:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46934 * 2 1 4 4 C 1.50698 * 109.47042 * 120.00049 * 2 1 3 5 5 C 1.38558 * 119.79944 * 299.97801 * 4 2 1 6 6 C 1.37779 * 120.30465 * 179.76755 * 5 4 2 7 7 C 1.39763 * 119.89842 * 0.51130 * 6 5 4 8 8 C 1.47431 * 120.19410 * 179.76927 * 7 6 5 9 9 O 1.21628 * 120.00243 * 208.87012 * 8 7 6 10 10 N 1.34779 * 120.00234 * 28.87315 * 8 7 6 11 11 C 1.36904 * 119.99783 * 2.16823 * 10 8 7 12 12 H 1.07999 * 120.00312 * 34.42487 * 11 10 8 13 13 C 1.39033 * 119.99942 * 214.43312 * 11 10 8 14 14 N 1.31383 * 119.99645 * 18.44130 * 13 11 10 15 15 Si 1.86796 * 120.00070 * 198.44148 * 13 11 10 16 16 H 1.48505 * 109.46941 * 89.99703 * 15 13 11 17 17 H 1.48494 * 109.47125 * 209.99698 * 15 13 11 18 18 H 1.48497 * 109.47055 * 330.00315 * 15 13 11 19 19 C 1.46495 * 120.00301 * 182.16608 * 10 8 7 20 20 C 1.55235 * 110.46900 * 57.94391 * 19 10 8 21 21 C 1.54893 * 102.58873 * 203.39411 * 20 19 10 22 22 C 1.54267 * 104.31115 * 37.93622 * 21 20 19 23 23 C 1.53877 * 106.59909 * 336.32030 * 22 21 20 24 24 C 1.40204 * 119.60837 * 359.48997 * 7 6 5 25 25 O 1.35660 * 120.14965 * 180.23226 * 24 7 6 26 26 C 1.38078 * 119.79996 * 120.00345 * 4 2 1 27 27 H 1.08999 * 109.47497 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.47271 * 60.00440 * 1 2 3 29 29 H 1.09009 * 109.46939 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46904 * 239.99903 * 2 1 3 31 31 H 1.09000 * 109.47343 * 300.00373 * 3 2 1 32 32 H 1.09001 * 109.47404 * 60.00210 * 3 2 1 33 33 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 34 34 H 1.07999 * 119.85052 * 0.02562 * 5 4 2 35 35 H 1.08003 * 120.04967 * 180.25709 * 6 5 4 36 36 H 0.96997 * 119.99656 * 179.97438 * 14 13 11 37 37 H 1.08997 * 110.43823 * 180.60031 * 19 10 8 38 38 H 1.09009 * 110.89432 * 85.10860 * 20 19 10 39 39 H 1.08998 * 110.76973 * 321.63175 * 20 19 10 40 40 H 1.08999 * 110.48524 * 279.18666 * 21 20 19 41 41 H 1.08999 * 110.48098 * 156.67878 * 21 20 19 42 42 H 1.08998 * 110.03093 * 95.60918 * 22 21 20 43 43 H 1.08997 * 110.02963 * 216.98690 * 22 21 20 44 44 H 1.08993 * 110.02880 * 119.28580 * 23 22 21 45 45 H 1.09001 * 110.03264 * 240.66981 * 23 22 21 46 46 H 0.96699 * 114.00259 * 90.00481 * 25 24 7 47 47 H 1.08003 * 119.95444 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6954 -0.2332 2.4869 6 6 2.1450 -0.8773 3.6188 7 6 2.9534 -2.0113 3.5004 8 6 3.4423 -2.7026 4.7073 9 8 4.4974 -3.3068 4.6767 10 7 2.7200 -2.6653 5.8446 11 6 1.5112 -2.0229 5.8669 12 1 0.8771 -2.0348 4.9927 13 6 1.0999 -1.3551 7.0149 14 7 1.9795 -1.0241 7.9329 15 14 -0.7032 -0.9286 7.2520 16 1 -1.3872 -2.0435 7.9552 17 1 -0.8163 0.3109 8.0619 18 1 -1.3395 -0.7144 5.9275 19 6 3.2283 -3.3119 7.0568 20 6 4.6118 -2.7251 7.4457 21 6 5.2362 -3.8638 8.2899 22 6 4.7869 -5.1566 7.5782 23 6 3.5102 -4.8058 6.7941 24 6 3.2919 -2.4908 2.2271 25 8 4.0720 -3.5933 2.0995 26 6 2.8259 -1.8327 1.0990 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.0741 0.6454 2.5794 35 1 1.8764 -0.5042 4.5961 36 1 1.6927 -0.5578 8.7337 37 1 2.5188 -3.1960 7.8761 38 1 4.4964 -1.8204 8.0428 39 1 5.2121 -2.5291 6.5573 40 1 4.8528 -3.8368 9.3099 41 1 6.3235 -3.7864 8.2899 42 1 5.5644 -5.4954 6.8934 43 1 4.5732 -5.9325 8.3132 44 1 3.6681 -4.9743 5.7289 45 1 2.6762 -5.4118 7.1482 46 1 3.5772 -4.4232 2.0629 47 1 3.0841 -2.1984 0.1161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271409140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:36 Heat of formation + Delta-G solvation = -59.925650 kcal Electronic energy + Delta-G solvation = -27960.511404 eV Core-core repulsion = 24300.993113 eV Total energy + Delta-G solvation = -3659.518291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.87447 -38.56345 -36.91075 -35.88555 -34.67915 -34.01424 -31.46938 -30.05923 -28.88553 -27.72994 -27.09953 -26.88962 -24.95470 -23.29920 -22.06672 -20.67276 -19.90222 -19.57842 -18.73659 -17.91620 -16.91544 -15.90760 -15.55149 -15.28555 -14.68478 -14.60226 -14.50965 -14.02494 -13.81573 -13.55892 -13.33309 -13.30391 -13.03744 -12.59619 -12.40880 -12.24974 -12.17297 -11.77422 -11.60514 -11.45353 -11.21816 -11.15097 -11.00180 -10.90354 -10.72478 -10.59639 -10.43628 -10.31640 -10.21318 -10.13858 -9.89958 -9.79888 -9.59167 -8.87808 -8.23766 -8.17784 -7.94057 -7.49599 -6.47245 -4.06145 1.56922 1.90247 3.06164 3.16461 3.17174 3.79612 4.02077 4.41402 4.65228 4.72430 4.89603 4.98087 5.05325 5.26496 5.49323 5.54427 5.56789 5.61292 5.64237 5.68810 5.70692 5.82961 5.86557 5.97041 6.06146 6.15280 6.27695 6.29209 6.31780 6.40615 6.41615 6.50577 6.54481 6.62703 6.68685 6.74345 6.76244 6.90286 6.97799 7.10738 7.12029 7.20195 7.28583 7.40086 7.47952 7.52336 7.85830 8.24145 8.37940 9.00222 9.51817 9.94371 10.56085 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.005344 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.037803 B = 5238.470806 C = 6923.699980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 C -0.144 4.144 4 C -0.061 4.061 5 C -0.147 4.147 6 C -0.058 4.058 7 C -0.127 4.127 8 C 0.503 3.497 9 O -0.577 6.577 10 N -0.427 5.427 11 C -0.344 4.344 12 H 0.096 0.904 13 C 0.044 3.956 14 N -0.850 5.850 15 Si 0.908 3.092 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.267 1.267 19 C 0.170 3.830 20 C -0.122 4.122 21 C -0.120 4.120 22 C -0.111 4.111 23 C -0.140 4.140 24 C 0.141 3.859 25 O -0.480 6.480 26 C -0.167 4.167 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.118 0.882 35 H 0.169 0.831 36 H 0.271 0.729 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.076 0.924 45 H 0.045 0.955 46 H 0.381 0.619 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.950 0.512 -8.223 8.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.201 4.201 4 C -0.061 4.061 5 C -0.166 4.166 6 C -0.076 4.076 7 C -0.131 4.131 8 C 0.293 3.707 9 O -0.462 6.462 10 N -0.144 5.144 11 C -0.472 4.472 12 H 0.114 0.886 13 C -0.164 4.164 14 N -0.485 5.485 15 Si 0.735 3.265 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.191 1.191 19 C 0.066 3.934 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.149 4.149 23 C -0.178 4.178 24 C 0.095 3.905 25 O -0.289 6.289 26 C -0.186 4.186 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.136 0.864 35 H 0.186 0.814 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.236 0.764 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.970 0.707 -7.984 8.254 hybrid contribution -1.400 -0.098 0.254 1.426 sum -3.370 0.609 -7.730 8.455 Atomic orbital electron populations 1.21853 0.94506 1.01974 1.01727 1.20099 0.95802 0.95949 0.95448 1.21853 1.01298 0.95225 1.01701 1.19705 0.96843 0.94964 0.94614 1.20954 1.02946 1.00900 0.91751 1.22387 0.91821 0.92612 1.00801 1.20592 1.00081 0.98771 0.93635 1.18000 0.84545 0.84029 0.84154 1.90643 1.23304 1.47004 1.85236 1.43387 1.17316 1.45954 1.07739 1.19594 0.94538 1.31386 1.01659 0.88641 1.25350 0.99003 0.95414 0.96612 1.69970 1.33344 1.35486 1.09690 0.86214 0.83225 0.78112 0.78981 1.20193 1.20821 1.19115 1.21619 0.95216 0.88516 0.88035 1.22727 0.96433 0.97287 0.99563 1.22246 0.99165 0.95885 0.98524 1.21947 0.97803 0.97006 0.98143 1.22545 0.95991 0.97647 1.01621 1.18520 0.91381 0.89621 0.90958 1.84797 1.33758 1.14868 1.95459 1.21049 1.01349 0.98445 0.97737 0.92212 0.92782 0.92589 0.90895 0.92771 0.92234 0.92550 0.86420 0.81444 0.91881 0.88536 0.91063 0.90862 0.92693 0.92950 0.92504 0.93409 0.90574 0.93644 0.76400 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.00 37.16 0.33 -1.20 16 2 C -0.05 -0.65 3.09 -91.77 -0.28 -0.93 16 3 C -0.14 -1.56 9.00 37.16 0.33 -1.22 16 4 C -0.06 -0.92 4.79 -104.56 -0.50 -1.43 16 5 C -0.15 -2.46 8.68 -39.63 -0.34 -2.80 16 6 C -0.06 -1.16 7.71 -39.18 -0.30 -1.46 16 7 C -0.13 -2.77 5.53 -104.85 -0.58 -3.35 16 8 C 0.50 12.26 6.46 -12.52 -0.08 12.18 16 9 O -0.58 -14.97 12.06 -14.13 -0.17 -15.14 16 10 N -0.43 -10.35 2.59 -106.97 -0.28 -10.63 16 11 C -0.34 -8.21 6.21 -14.99 -0.09 -8.30 16 12 H 0.10 2.23 6.08 -52.49 -0.32 1.91 16 13 C 0.04 1.03 4.82 -17.45 -0.08 0.94 16 14 N -0.85 -20.93 11.12 55.50 0.62 -20.32 16 15 Si 0.91 18.40 29.59 -169.99 -5.03 13.37 16 16 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 19 C 0.17 3.95 2.26 -66.08 -0.15 3.80 16 20 C -0.12 -2.75 6.18 -24.55 -0.15 -2.90 16 21 C -0.12 -2.27 6.82 -25.07 -0.17 -2.44 16 22 C -0.11 -2.05 6.80 -25.61 -0.17 -2.23 16 23 C -0.14 -2.93 6.04 -25.61 -0.15 -3.08 16 24 C 0.14 2.75 6.69 -38.68 -0.26 2.49 16 25 O -0.48 -9.16 11.98 -38.06 -0.46 -9.61 16 26 C -0.17 -2.75 9.59 -39.48 -0.38 -3.13 16 27 H 0.06 0.66 7.37 -51.93 -0.38 0.27 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.07 0.80 7.86 -51.93 -0.41 0.39 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.66 7.37 -51.93 -0.38 0.27 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.12 1.72 7.07 -52.49 -0.37 1.35 16 35 H 0.17 3.65 5.38 -52.48 -0.28 3.37 16 36 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 37 H 0.10 2.38 6.28 -51.93 -0.33 2.05 16 38 H 0.07 1.68 7.72 -51.92 -0.40 1.28 16 39 H 0.07 1.83 6.08 -51.93 -0.32 1.51 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.73 5.99 -51.93 -0.31 1.42 16 45 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.38 5.60 9.06 45.56 0.41 6.01 16 47 H 0.12 1.69 7.93 -52.48 -0.42 1.28 16 LS Contribution 364.12 15.07 5.49 5.49 Total: -1.00 -27.95 364.12 -9.31 -37.26 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -6.44 Total: 14.63 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -3.04 Total: -15.05 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.34 Total: -30.94 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.63 Total: -24.75 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.95 -9.31 -37.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271409140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.668 kcal (2) G-P(sol) polarization free energy of solvation -27.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds