Wall clock time and date at job start Tue Mar 31 2020 12:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46934 * 2 1 4 4 C 1.50698 * 109.47042 * 120.00049 * 2 1 3 5 5 C 1.38558 * 119.79944 * 299.97801 * 4 2 1 6 6 C 1.37779 * 120.30465 * 179.76755 * 5 4 2 7 7 C 1.39763 * 119.89842 * 0.51130 * 6 5 4 8 8 C 1.47431 * 120.19410 * 179.76927 * 7 6 5 9 9 O 1.21628 * 120.00243 * 208.87012 * 8 7 6 10 10 N 1.34779 * 120.00234 * 28.87315 * 8 7 6 11 11 C 1.36904 * 119.99783 * 2.16823 * 10 8 7 12 12 H 1.07999 * 120.00312 * 34.42487 * 11 10 8 13 13 C 1.39033 * 119.99942 * 214.43312 * 11 10 8 14 14 N 1.31383 * 119.99645 * 18.44130 * 13 11 10 15 15 Si 1.86796 * 120.00070 * 198.44148 * 13 11 10 16 16 H 1.48505 * 109.46941 * 89.99703 * 15 13 11 17 17 H 1.48494 * 109.47125 * 209.99698 * 15 13 11 18 18 H 1.48497 * 109.47055 * 330.00315 * 15 13 11 19 19 C 1.46495 * 120.00301 * 182.16608 * 10 8 7 20 20 C 1.55235 * 110.46900 * 57.94391 * 19 10 8 21 21 C 1.54893 * 102.58873 * 203.39411 * 20 19 10 22 22 C 1.54267 * 104.31115 * 37.93622 * 21 20 19 23 23 C 1.53877 * 106.59909 * 336.32030 * 22 21 20 24 24 C 1.40204 * 119.60837 * 359.48997 * 7 6 5 25 25 O 1.35660 * 120.14965 * 180.23226 * 24 7 6 26 26 C 1.38078 * 119.79996 * 120.00345 * 4 2 1 27 27 H 1.08999 * 109.47497 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.47271 * 60.00440 * 1 2 3 29 29 H 1.09009 * 109.46939 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46904 * 239.99903 * 2 1 3 31 31 H 1.09000 * 109.47343 * 300.00373 * 3 2 1 32 32 H 1.09001 * 109.47404 * 60.00210 * 3 2 1 33 33 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 34 34 H 1.07999 * 119.85052 * 0.02562 * 5 4 2 35 35 H 1.08003 * 120.04967 * 180.25709 * 6 5 4 36 36 H 0.96997 * 119.99656 * 179.97438 * 14 13 11 37 37 H 1.08997 * 110.43823 * 180.60031 * 19 10 8 38 38 H 1.09009 * 110.89432 * 85.10860 * 20 19 10 39 39 H 1.08998 * 110.76973 * 321.63175 * 20 19 10 40 40 H 1.08999 * 110.48524 * 279.18666 * 21 20 19 41 41 H 1.08999 * 110.48098 * 156.67878 * 21 20 19 42 42 H 1.08998 * 110.03093 * 95.60918 * 22 21 20 43 43 H 1.08997 * 110.02963 * 216.98690 * 22 21 20 44 44 H 1.08993 * 110.02880 * 119.28580 * 23 22 21 45 45 H 1.09001 * 110.03264 * 240.66981 * 23 22 21 46 46 H 0.96699 * 114.00259 * 90.00481 * 25 24 7 47 47 H 1.08003 * 119.95444 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6954 -0.2332 2.4869 6 6 2.1450 -0.8773 3.6188 7 6 2.9534 -2.0113 3.5004 8 6 3.4423 -2.7026 4.7073 9 8 4.4974 -3.3068 4.6767 10 7 2.7200 -2.6653 5.8446 11 6 1.5112 -2.0229 5.8669 12 1 0.8771 -2.0348 4.9927 13 6 1.0999 -1.3551 7.0149 14 7 1.9795 -1.0241 7.9329 15 14 -0.7032 -0.9286 7.2520 16 1 -1.3872 -2.0435 7.9552 17 1 -0.8163 0.3109 8.0619 18 1 -1.3395 -0.7144 5.9275 19 6 3.2283 -3.3119 7.0568 20 6 4.6118 -2.7251 7.4457 21 6 5.2362 -3.8638 8.2899 22 6 4.7869 -5.1566 7.5782 23 6 3.5102 -4.8058 6.7941 24 6 3.2919 -2.4908 2.2271 25 8 4.0720 -3.5933 2.0995 26 6 2.8259 -1.8327 1.0990 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.0741 0.6454 2.5794 35 1 1.8764 -0.5042 4.5961 36 1 1.6927 -0.5578 8.7337 37 1 2.5188 -3.1960 7.8761 38 1 4.4964 -1.8204 8.0428 39 1 5.2121 -2.5291 6.5573 40 1 4.8528 -3.8368 9.3099 41 1 6.3235 -3.7864 8.2899 42 1 5.5644 -5.4954 6.8934 43 1 4.5732 -5.9325 8.3132 44 1 3.6681 -4.9743 5.7289 45 1 2.6762 -5.4118 7.1482 46 1 3.5772 -4.4232 2.0629 47 1 3.0841 -2.1984 0.1161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271409140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:35 Heat of formation + Delta-G solvation = -73.819492 kcal Electronic energy + Delta-G solvation = -27961.113886 eV Core-core repulsion = 24300.993113 eV Total energy + Delta-G solvation = -3660.120773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.47250 -40.14416 -38.26917 -37.57728 -36.35935 -35.38369 -33.30130 -31.45469 -30.32327 -29.43526 -28.55332 -27.91554 -26.74884 -24.68268 -23.51672 -22.26743 -21.26177 -21.12118 -20.53629 -19.59417 -18.32865 -17.57765 -17.04617 -16.72120 -16.33424 -16.20327 -16.11630 -15.45929 -15.23889 -15.04491 -14.71956 -14.58725 -14.28603 -14.24000 -14.11290 -13.78173 -13.30082 -13.11699 -13.02341 -12.88485 -12.73769 -12.61320 -12.47487 -12.13834 -12.07686 -12.02759 -11.93527 -11.87211 -11.79684 -11.65592 -11.53127 -11.29923 -11.19013 -10.68389 -10.04840 -9.64922 -9.44423 -9.30035 -8.28882 -5.93584 0.10424 0.48028 1.43166 1.48241 1.57296 2.16870 2.31683 2.82698 2.97614 3.17849 3.35847 3.83107 3.94211 3.97246 3.99616 4.08331 4.24154 4.34450 4.37643 4.43641 4.58686 4.65816 4.70416 4.77272 4.84450 4.88080 4.88774 4.91971 4.93141 5.05551 5.05856 5.12167 5.14467 5.17086 5.22224 5.25147 5.35344 5.45478 5.46728 5.53313 5.56291 5.57081 5.63357 5.69810 5.72514 6.02101 6.03967 6.52801 6.89480 7.15451 7.67333 8.10245 8.75145 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.005344 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.037803 B = 5238.470806 C = 6923.699980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.053 4.053 3 C -0.144 4.144 4 C -0.044 4.044 5 C -0.143 4.143 6 C -0.069 4.069 7 C -0.167 4.167 8 C 0.492 3.508 9 O -0.604 6.604 10 N -0.437 5.437 11 C -0.352 4.352 12 H 0.097 0.903 13 C 0.008 3.992 14 N -0.879 5.879 15 Si 0.972 3.028 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.256 1.256 19 C 0.166 3.834 20 C -0.117 4.117 21 C -0.112 4.112 22 C -0.104 4.104 23 C -0.135 4.135 24 C 0.133 3.867 25 O -0.495 6.495 26 C -0.162 4.162 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.271 0.729 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.396 0.604 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.318 0.835 -9.991 10.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.071 4.071 3 C -0.201 4.201 4 C -0.044 4.044 5 C -0.161 4.161 6 C -0.088 4.088 7 C -0.171 4.171 8 C 0.283 3.717 9 O -0.492 6.492 10 N -0.153 5.153 11 C -0.480 4.480 12 H 0.114 0.886 13 C -0.197 4.197 14 N -0.515 5.515 15 Si 0.796 3.204 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.180 1.180 19 C 0.062 3.938 20 C -0.155 4.155 21 C -0.150 4.150 22 C -0.142 4.142 23 C -0.174 4.174 24 C 0.087 3.913 25 O -0.306 6.306 26 C -0.181 4.181 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.254 0.746 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.351 1.023 -9.761 10.371 hybrid contribution -0.956 -0.151 0.696 1.193 sum -4.307 0.871 -9.065 10.074 Atomic orbital electron populations 1.21854 0.93292 1.02074 1.02735 1.20210 0.96696 0.96255 0.93931 1.21863 1.00849 0.94570 1.02789 1.20157 0.94793 0.93902 0.95578 1.21153 1.02531 1.01148 0.91304 1.22139 0.92666 0.92959 1.01020 1.20582 1.02709 1.00217 0.93555 1.18499 0.84287 0.83817 0.85080 1.90588 1.24358 1.48334 1.85918 1.43579 1.17576 1.46096 1.08082 1.19764 0.94465 1.31737 1.02045 0.88574 1.26057 1.02478 0.95056 0.96078 1.70078 1.34998 1.36339 1.10127 0.85243 0.78582 0.77508 0.79105 1.20281 1.20839 1.17987 1.21638 0.94777 0.90000 0.87424 1.22574 0.96280 0.98076 0.98590 1.22224 0.99989 0.94243 0.98546 1.21923 0.96268 0.97560 0.98463 1.22482 0.97894 0.96266 1.00710 1.18729 0.91477 0.90014 0.91066 1.84735 1.34712 1.15762 1.95414 1.21339 1.00611 0.98232 0.97869 0.92663 0.90410 0.92981 0.89170 0.90324 0.92618 0.93318 0.84159 0.83873 0.91895 0.90278 0.92999 0.93891 0.91067 0.91342 0.92617 0.90158 0.92823 0.92443 0.74616 0.83383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.00 71.98 0.65 -1.86 16 2 C -0.05 -1.05 3.09 -11.54 -0.04 -1.08 16 3 C -0.14 -2.61 9.00 71.98 0.65 -1.96 16 4 C -0.04 -1.23 4.79 -19.83 -0.09 -1.33 16 5 C -0.14 -4.64 8.68 22.24 0.19 -4.44 16 6 C -0.07 -2.85 7.71 22.53 0.17 -2.68 16 7 C -0.17 -7.54 5.53 -20.01 -0.11 -7.65 16 8 C 0.49 25.28 6.46 86.66 0.56 25.84 16 9 O -0.60 -33.08 12.06 14.41 0.17 -32.90 16 10 N -0.44 -22.26 2.59 -610.60 -1.58 -23.84 16 11 C -0.35 -17.48 6.21 84.09 0.52 -16.96 16 12 H 0.10 4.65 6.08 -2.91 -0.02 4.64 16 13 C 0.01 0.38 4.82 84.95 0.41 0.79 16 14 N -0.88 -44.92 11.12 21.68 0.24 -44.68 16 15 Si 0.97 38.16 29.59 68.60 2.03 40.19 16 16 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 17 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 18 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 19 C 0.17 8.00 2.26 46.19 0.10 8.11 16 20 C -0.12 -5.50 6.18 32.01 0.20 -5.30 16 21 C -0.11 -4.18 6.82 31.67 0.22 -3.97 16 22 C -0.10 -3.77 6.80 31.32 0.21 -3.55 16 23 C -0.14 -5.77 6.04 31.32 0.19 -5.58 16 24 C 0.13 5.22 6.69 22.85 0.15 5.37 16 25 O -0.50 -19.15 11.98 -71.23 -0.85 -20.01 16 26 C -0.16 -5.03 9.59 22.34 0.21 -4.82 16 27 H 0.05 1.03 7.37 -2.39 -0.02 1.01 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.09 1.56 7.86 -2.39 -0.02 1.54 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.06 7.37 -2.39 -0.02 1.04 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.14 3.83 7.07 -2.91 -0.02 3.81 16 35 H 0.14 6.55 5.38 -2.91 -0.02 6.54 16 36 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 37 H 0.08 4.06 6.28 -2.39 -0.02 4.04 16 38 H 0.05 2.58 7.72 -2.38 -0.02 2.56 16 39 H 0.04 2.26 6.08 -2.39 -0.01 2.25 16 40 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.05 2.53 5.99 -2.39 -0.01 2.52 16 45 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.40 11.89 9.06 -74.06 -0.67 11.22 16 47 H 0.15 3.72 7.93 -2.91 -0.02 3.70 16 Total: -1.00 -63.65 364.12 4.52 -59.13 By element: Atomic # 1 Polarization: 42.89 SS G_CDS: 0.31 Total: 43.20 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: 4.20 Total: -21.09 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -1.34 Total: -68.52 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -0.68 Total: -52.91 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -63.65 4.52 -59.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271409140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.694 kcal (2) G-P(sol) polarization free energy of solvation -63.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds