Wall clock time and date at job start Tue Mar 31 2020 12:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47237 * 2 1 4 4 C 1.50701 * 109.47366 * 180.02562 * 3 2 1 5 5 C 1.38398 * 119.82395 * 89.99775 * 4 3 2 6 6 C 1.37888 * 120.17306 * 180.02562 * 5 4 3 7 7 C 1.39850 * 119.82189 * 0.02562 * 6 5 4 8 8 C 1.47171 * 120.16950 * 179.97438 * 7 6 5 9 9 O 1.21248 * 120.00005 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99643 * 180.02562 * 8 7 6 11 11 C 1.53002 * 109.46925 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47300 * 180.02562 * 11 10 8 13 13 O 1.21279 * 119.99697 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00141 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99875 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47037 * 180.02562 * 15 14 12 17 17 C 1.50706 * 109.47308 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37871 * 119.99983 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00130 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99939 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47057 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47389 * 119.99579 * 21 19 17 24 24 H 1.48495 * 109.47216 * 239.99726 * 21 19 17 25 25 C 1.39848 * 119.65819 * 0.25580 * 7 6 5 26 26 C 1.37887 * 119.82503 * 359.50942 * 25 7 6 27 27 H 1.08997 * 109.46977 * 300.00255 * 1 2 3 28 28 H 1.09000 * 109.47272 * 59.99996 * 1 2 3 29 29 H 1.08998 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46593 * 239.99982 * 2 1 3 31 31 H 1.08992 * 109.47148 * 120.00246 * 2 1 3 32 32 H 1.09005 * 109.47059 * 59.99720 * 3 2 1 33 33 H 1.09005 * 109.47431 * 300.00330 * 3 2 1 34 34 H 1.08006 * 119.91844 * 359.97438 * 5 4 3 35 35 H 1.08001 * 120.08797 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47318 * 299.99505 * 10 8 7 37 37 H 1.09000 * 109.47161 * 60.00135 * 10 8 7 38 38 H 1.09004 * 109.46930 * 299.99901 * 11 10 8 39 39 H 1.09004 * 109.47059 * 59.99503 * 11 10 8 40 40 H 0.96999 * 120.00043 * 0.02562 * 14 12 11 41 41 H 1.08996 * 109.47565 * 300.00629 * 15 14 12 42 42 H 1.09004 * 109.47374 * 60.00435 * 15 14 12 43 43 H 1.08996 * 109.47407 * 300.00665 * 16 15 14 44 44 H 1.09000 * 109.46986 * 60.00436 * 16 15 14 45 45 H 0.97005 * 120.00032 * 180.02562 * 20 19 17 46 46 H 1.08003 * 120.08959 * 179.72319 * 25 7 6 47 47 H 1.08001 * 119.91681 * 180.20577 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.2349 1.4426 -1.2016 6 6 5.6137 1.4421 -1.2106 7 6 6.3171 1.4409 -0.0018 8 6 7.7888 1.4398 -0.0025 9 8 8.3946 1.4404 -1.0528 10 6 8.5428 1.4379 1.3024 11 6 10.0470 1.4377 1.0221 12 6 10.8010 1.4352 2.3269 13 8 10.1951 1.4342 3.3774 14 7 12.1488 1.4341 2.3263 15 6 12.8818 1.4322 3.5947 16 6 14.3859 1.4319 3.3145 17 6 15.1401 1.4293 4.6193 18 1 14.6005 1.4276 5.5548 19 6 16.5188 1.4291 4.6187 20 7 17.1758 1.4306 3.4794 21 14 17.4535 1.4252 6.2360 22 1 16.4890 1.4233 7.3651 23 1 18.3070 0.2124 6.3115 24 1 18.3075 2.6373 6.3171 25 6 5.6148 1.4348 1.2075 26 6 4.2359 1.4402 1.1998 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.6902 1.4423 -2.1343 35 1 6.1491 1.4418 -2.1486 36 1 8.2805 2.3276 1.8749 37 1 8.2791 0.5476 1.8731 38 1 10.3097 0.5483 0.4494 39 1 10.3104 2.3283 0.4515 40 1 12.6335 1.4352 1.4861 41 1 12.6194 2.3217 4.1673 42 1 12.6180 0.5418 4.1655 43 1 14.6487 0.5426 2.7416 44 1 14.6494 2.3225 2.7439 45 1 18.1459 1.4301 3.4790 46 1 6.1509 1.4293 2.1450 47 1 3.6920 1.4389 2.1328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273151055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:25 Heat of formation + Delta-G solvation = -90.071509 kcal Electronic energy + Delta-G solvation = -24285.285501 eV Core-core repulsion = 20624.459987 eV Total energy + Delta-G solvation = -3660.825514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.48412 -39.34236 -38.65965 -35.51290 -34.91707 -33.11136 -32.81272 -31.66605 -31.32553 -29.68467 -27.74213 -25.89578 -24.32117 -23.18524 -22.67574 -21.56819 -20.95372 -20.11557 -19.62305 -17.64479 -16.65519 -16.28421 -16.09687 -16.02440 -15.71888 -15.13631 -15.05055 -14.78736 -14.57660 -14.39948 -14.17288 -14.05548 -13.84433 -13.58160 -13.18974 -12.91410 -12.65133 -12.51862 -12.41030 -12.31633 -11.96470 -11.68615 -11.49840 -11.43265 -11.25370 -11.19848 -11.11264 -11.04220 -10.62866 -10.33589 -9.92447 -9.80373 -9.46047 -9.36197 -9.17455 -9.10634 -8.54563 -8.35410 -6.09362 -4.12285 0.33059 1.01750 2.13401 3.00382 3.28296 3.35699 3.40109 3.42634 3.48901 3.98854 4.23536 4.32250 4.42380 4.53911 4.57306 4.62775 4.66925 4.88279 4.91894 4.98875 5.01750 5.10822 5.22548 5.24999 5.27769 5.31080 5.33049 5.45967 5.57462 5.60488 5.62304 5.67047 5.76106 5.79387 5.86018 5.95036 6.05597 6.16254 6.34297 6.34788 6.51696 6.73792 6.92448 7.29995 7.52072 7.61883 7.88791 8.01767 8.27604 8.64537 8.94024 9.52699 11.02268 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.036885 B = 0.001590 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.940804 B =17609.407538 C =18206.049462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.086 4.086 4 C -0.053 4.053 5 C -0.133 4.133 6 C -0.059 4.059 7 C -0.173 4.173 8 C 0.397 3.603 9 O -0.454 6.454 10 C -0.149 4.149 11 C -0.134 4.134 12 C 0.505 3.495 13 O -0.556 6.556 14 N -0.722 5.722 15 C 0.121 3.879 16 C 0.011 3.989 17 C -0.521 4.521 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.066 4.066 26 C -0.132 4.132 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.399 0.601 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.261 0.739 46 H 0.137 0.863 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.935 -0.704 -10.618 33.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.124 4.124 4 C -0.053 4.053 5 C -0.151 4.151 6 C -0.077 4.077 7 C -0.174 4.174 8 C 0.275 3.725 9 O -0.329 6.329 10 C -0.186 4.186 11 C -0.174 4.174 12 C 0.291 3.709 13 O -0.435 6.435 14 N -0.371 5.371 15 C -0.001 4.001 16 C -0.026 4.026 17 C -0.560 4.560 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.085 4.085 26 C -0.150 4.150 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.233 0.767 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.071 0.929 46 H 0.155 0.845 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -31.842 -0.706 -10.469 33.526 hybrid contribution 0.899 0.008 0.460 1.010 sum -30.943 -0.698 -10.009 32.529 Atomic orbital electron populations 1.21790 0.95478 1.01886 1.01913 1.21511 0.95855 0.95707 1.02628 1.20740 0.90513 0.97786 1.03314 1.20194 0.95965 0.95895 0.93212 1.21017 0.93916 1.02378 0.97815 1.21424 0.94011 0.94359 0.97881 1.20530 0.95025 1.07512 0.94370 1.22575 0.88233 0.70880 0.90785 1.90520 1.71104 1.36306 1.34993 1.21757 0.94393 1.06123 0.96345 1.21463 0.94126 1.05449 0.96331 1.20528 0.82978 0.76516 0.90880 1.90659 1.68380 1.50834 1.33649 1.46348 1.05965 1.73523 1.11308 1.21719 0.94217 1.00736 0.83451 1.19340 0.87337 0.97892 0.98072 1.21092 0.91273 1.51242 0.92392 0.92207 1.24997 0.97774 0.94993 0.96531 1.69968 1.07661 1.50447 1.25195 0.86460 0.79826 0.77616 0.83684 1.19584 1.20933 1.20938 1.21563 0.94331 0.94915 0.97647 1.21047 0.94046 1.02037 0.97844 0.92608 0.92660 0.92543 0.91746 0.91651 0.90619 0.90723 0.85561 0.84907 0.87448 0.87449 0.88483 0.88473 0.76744 0.92589 0.92582 0.95911 0.95909 0.92896 0.84536 0.85376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.91 37.16 0.37 -0.23 16 2 C -0.12 -0.56 5.92 -26.73 -0.16 -0.72 16 3 C -0.09 -0.42 5.33 -27.89 -0.15 -0.57 16 4 C -0.05 -0.36 5.14 -104.50 -0.54 -0.90 16 5 C -0.13 -0.99 9.68 -39.65 -0.38 -1.37 16 6 C -0.06 -0.53 9.60 -39.11 -0.38 -0.91 16 7 C -0.17 -1.68 5.87 -105.07 -0.62 -2.30 16 8 C 0.40 4.37 7.12 -30.68 -0.22 4.15 16 9 O -0.45 -6.11 15.98 5.59 0.09 -6.02 16 10 C -0.15 -1.60 3.60 -27.88 -0.10 -1.70 16 11 C -0.13 -1.64 4.99 -27.88 -0.14 -1.78 16 12 C 0.51 8.28 7.83 -10.99 -0.09 8.19 16 13 O -0.56 -10.86 15.98 5.56 0.09 -10.77 16 14 N -0.72 -12.58 5.56 -60.30 -0.33 -12.91 16 15 C 0.12 2.58 5.61 -4.04 -0.02 2.56 16 16 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 17 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 18 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 21 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 C -0.07 -0.54 9.47 -39.11 -0.37 -0.91 16 26 C -0.13 -0.94 9.68 -39.65 -0.38 -1.33 16 27 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 34 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 35 H 0.13 1.18 7.65 -52.49 -0.40 0.78 16 36 H 0.11 1.11 8.05 -51.93 -0.42 0.69 16 37 H 0.11 1.10 8.04 -51.93 -0.42 0.69 16 38 H 0.10 1.11 8.10 -51.93 -0.42 0.69 16 39 H 0.10 1.11 8.10 -51.93 -0.42 0.69 16 40 H 0.40 6.08 8.47 -40.82 -0.35 5.74 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.14 0.95 7.05 -52.48 -0.37 0.58 16 47 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 398.14 15.07 6.00 6.00 Total: -1.00 -32.89 398.14 -9.99 -42.88 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -7.83 Total: 0.87 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -3.73 Total: -10.95 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.40 Total: -38.40 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.18 Total: -16.79 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.89 -9.99 -42.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273151055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.193 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds