Wall clock time and date at job start Tue Mar 31 2020 11:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46697 * 2 1 4 4 C 1.50704 * 109.47604 * 64.72182 * 3 2 1 5 5 O 1.21282 * 120.00217 * 246.14578 * 4 3 2 6 6 N 1.34777 * 119.99877 * 66.13862 * 4 3 2 7 7 C 1.39918 * 120.00109 * 175.81267 * 6 4 3 8 8 C 1.38962 * 120.03661 * 35.19927 * 7 6 4 9 9 C 1.38165 * 120.06981 * 180.02562 * 8 7 6 10 10 C 1.38169 * 120.13573 * 359.97438 * 9 8 7 11 11 C 1.38905 * 120.07090 * 0.02562 * 10 9 8 12 12 O 1.35754 * 120.03347 * 179.97438 * 11 10 9 13 13 C 1.34828 * 116.99843 * 174.37872 * 12 11 10 14 14 H 1.08001 * 120.00650 * 5.04464 * 13 12 11 15 15 C 1.38655 * 119.99521 * 185.03895 * 13 12 11 16 16 N 1.31551 * 120.00516 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99655 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47393 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47162 * 120.00233 * 17 15 13 20 20 H 1.48499 * 109.46950 * 239.99742 * 17 15 13 21 21 C 1.38715 * 120.03714 * 215.50526 * 7 6 4 22 22 C 1.53007 * 109.46979 * 184.72180 * 3 2 1 23 23 C 1.52996 * 109.46979 * 179.97438 * 22 3 2 24 24 C 1.53000 * 109.47195 * 299.99578 * 23 22 3 25 25 C 1.52999 * 109.46995 * 60.00489 * 24 23 22 26 26 C 1.52998 * 109.47201 * 300.00055 * 25 24 23 27 27 H 1.08999 * 109.46978 * 65.16814 * 1 2 3 28 28 H 1.09004 * 109.47113 * 185.16722 * 1 2 3 29 29 H 1.08999 * 109.47422 * 305.16785 * 1 2 3 30 30 H 1.08997 * 109.47368 * 239.99925 * 2 1 3 31 31 H 1.09000 * 109.47023 * 119.99575 * 2 1 3 32 32 H 0.96999 * 120.00039 * 355.81106 * 6 4 3 33 33 H 1.07998 * 119.96551 * 0.02562 * 8 7 6 34 34 H 1.08000 * 119.93233 * 179.97438 * 9 8 7 35 35 H 1.07995 * 119.96391 * 180.02562 * 10 9 8 36 36 H 0.97001 * 120.00798 * 180.02562 * 16 15 13 37 37 H 1.08001 * 120.06969 * 359.97438 * 21 7 6 38 38 H 1.09001 * 109.46627 * 299.99953 * 22 3 2 39 39 H 1.09000 * 109.46862 * 59.99617 * 22 3 2 40 40 H 1.09006 * 109.46597 * 179.97438 * 23 22 3 41 41 H 1.09000 * 109.47637 * 60.00091 * 23 22 3 42 42 H 1.08988 * 109.47109 * 300.00062 * 24 23 22 43 43 H 1.09005 * 109.47126 * 180.02562 * 24 23 22 44 44 H 1.08999 * 109.47273 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.47308 * 59.99701 * 25 24 23 46 46 H 1.09001 * 109.46701 * 300.00019 * 26 25 24 47 47 H 1.08997 * 109.47578 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6353 2.1184 1.2848 5 8 0.8441 3.0373 1.2635 6 7 2.1528 1.7017 2.4574 7 6 1.8457 2.3843 3.6396 8 6 0.5837 2.9388 3.8148 9 6 0.2799 3.6135 4.9817 10 6 1.2291 3.7385 5.9779 11 6 2.4924 3.1863 5.8088 12 8 3.4246 3.3100 6.7879 13 6 4.5888 2.6534 6.6110 14 1 4.7784 2.1297 5.6857 15 6 5.5429 2.6506 7.6172 16 7 5.3119 3.2881 8.7445 17 14 7.1562 1.7414 7.3719 18 1 7.1697 1.1109 6.0276 19 1 8.2857 2.6994 7.4802 20 1 7.2960 0.6917 8.4130 21 6 2.8028 2.5136 4.6353 22 6 3.5654 1.4442 -0.1187 23 6 4.0752 2.8867 -0.1194 24 6 3.4706 3.6408 -1.3054 25 6 1.9452 3.6392 -1.1867 26 6 1.4352 2.1967 -1.1860 27 1 -0.3633 0.4316 -0.9326 28 1 -0.3633 -1.0235 0.0926 29 1 -0.3634 0.5919 0.8401 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.7380 0.9285 2.4818 33 1 -0.1605 2.8424 3.0381 34 1 -0.7015 4.0440 5.1154 35 1 0.9885 4.2660 6.8890 36 1 5.9795 3.2865 9.4483 37 1 3.7858 2.0874 4.4997 38 1 3.9961 0.9065 0.7260 39 1 3.8580 0.9553 -1.0480 40 1 5.1620 2.8878 -0.2035 41 1 3.7826 3.3760 0.8096 42 1 3.7632 3.1516 -2.2343 43 1 3.8342 4.6684 -1.3061 44 1 1.5144 4.1760 -2.0318 45 1 1.6525 4.1284 -0.2576 46 1 1.7279 1.7074 -2.1150 47 1 0.3485 2.1954 -1.1018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273898021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:31 Heat of formation + Delta-G solvation = -61.044951 kcal Electronic energy + Delta-G solvation = -27518.422652 eV Core-core repulsion = 23858.855824 eV Total energy + Delta-G solvation = -3659.566828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.14766 -39.05211 -37.61619 -36.19656 -34.52821 -33.99661 -32.23892 -30.95934 -29.46486 -29.14653 -28.39437 -25.34989 -24.40144 -23.35852 -22.56895 -21.78967 -21.05635 -20.48487 -19.23227 -17.90089 -17.48962 -16.46660 -15.91720 -15.60433 -15.16664 -14.94569 -14.62530 -14.29529 -14.19911 -14.04530 -13.85383 -13.57896 -13.52156 -13.26079 -12.94867 -12.82938 -12.44446 -12.25864 -12.02774 -11.75012 -11.73579 -11.58137 -11.50874 -11.23459 -11.15785 -11.10888 -10.96612 -10.76999 -10.60116 -10.44563 -10.20140 -10.09132 -9.75900 -9.48823 -9.17919 -8.80908 -7.71817 -7.15119 -6.45171 -4.04928 2.00033 2.39371 2.88103 3.10725 3.11417 3.16832 3.30248 3.95088 4.34571 4.40948 4.54826 4.60683 4.85285 4.94617 4.99821 5.06973 5.10701 5.19073 5.26149 5.29188 5.38521 5.43248 5.46294 5.53399 5.67608 5.70944 5.76502 5.80898 5.83269 5.92132 6.01003 6.05568 6.06883 6.09508 6.13826 6.18316 6.24391 6.27287 6.30948 6.50003 6.66695 6.99703 7.02031 7.14103 7.32747 7.43172 7.74286 7.83418 7.99197 8.38741 9.00347 9.71208 10.73021 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.003809 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.701350 B = 7350.195706 C = 8216.191847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.112 4.112 3 C -0.075 4.075 4 C 0.528 3.472 5 O -0.516 6.516 6 N -0.669 5.669 7 C 0.179 3.821 8 C -0.204 4.204 9 C -0.065 4.065 10 C -0.200 4.200 11 C 0.167 3.833 12 O -0.177 6.177 13 C -0.392 4.392 14 H 0.090 0.910 15 C 0.039 3.961 16 N -0.862 5.862 17 Si 0.939 3.061 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.256 4.256 22 C -0.108 4.108 23 C -0.126 4.126 24 C -0.117 4.117 25 C -0.133 4.133 26 C -0.092 4.092 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.404 0.596 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.269 0.731 37 H 0.129 0.871 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.652 -6.293 -19.484 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.150 4.150 3 C -0.079 4.079 4 C 0.315 3.685 5 O -0.392 6.392 6 N -0.313 5.313 7 C 0.086 3.914 8 C -0.225 4.225 9 C -0.084 4.084 10 C -0.220 4.220 11 C 0.113 3.887 12 O -0.081 6.081 13 C -0.468 4.468 14 H 0.108 0.892 15 C -0.165 4.165 16 N -0.497 5.497 17 Si 0.764 3.236 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.201 1.201 21 C -0.278 4.278 22 C -0.146 4.146 23 C -0.164 4.164 24 C -0.155 4.155 25 C -0.170 4.170 26 C -0.129 4.129 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.239 0.761 33 H 0.141 0.859 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.079 0.921 37 H 0.146 0.854 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.083 0.917 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.076 -5.470 -19.115 20.520 hybrid contribution 1.286 -0.888 -0.061 1.564 sum -3.790 -6.358 -19.176 20.555 Atomic orbital electron populations 1.21866 0.95192 1.01815 1.02583 1.21591 0.96742 0.93837 1.02840 1.20942 0.97044 0.96267 0.93598 1.20455 0.80392 0.83159 0.84491 1.90642 1.33056 1.28874 1.86579 1.43525 1.49978 1.31915 1.05881 1.17435 0.93211 0.95584 0.85147 1.20667 0.95763 1.06901 0.99177 1.20558 0.97917 0.97379 0.92582 1.20258 0.92134 1.08452 1.01148 1.19070 0.89432 0.92203 0.87954 1.84006 1.23118 1.62335 1.38633 1.21314 0.91183 1.31484 1.02812 0.89229 1.25265 0.99311 0.97354 0.94536 1.70041 1.35024 1.39666 1.05011 0.85676 0.80377 0.78882 0.78626 1.19219 1.20157 1.20138 1.20829 0.99816 1.11132 0.95998 1.21632 0.92479 0.97768 1.02700 1.21590 1.00199 0.95155 0.99429 1.21528 0.96028 1.00099 0.97846 1.21751 0.94933 0.96739 1.03587 1.21406 1.00794 0.95364 0.95380 0.92079 0.92498 0.92372 0.90713 0.91503 0.76119 0.85925 0.86716 0.86465 0.92087 0.85371 0.91495 0.90742 0.91589 0.91629 0.92362 0.92166 0.92350 0.89473 0.91673 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.15 37.16 0.34 -1.11 16 2 C -0.11 -0.97 4.97 -26.73 -0.13 -1.10 16 3 C -0.08 -0.78 0.42 -155.66 -0.07 -0.85 16 4 C 0.53 7.52 3.59 -10.98 -0.04 7.48 16 5 O -0.52 -8.94 11.37 5.56 0.06 -8.87 16 6 N -0.67 -10.04 5.10 -9.88 -0.05 -10.09 16 7 C 0.18 3.41 6.29 -83.72 -0.53 2.88 16 8 C -0.20 -3.92 8.69 -39.34 -0.34 -4.27 16 9 C -0.07 -1.25 10.03 -39.63 -0.40 -1.64 16 10 C -0.20 -4.33 9.99 -39.36 -0.39 -4.73 16 11 C 0.17 4.07 6.64 -39.13 -0.26 3.81 16 12 O -0.18 -5.05 9.76 0.04 0.00 -5.05 16 13 C -0.39 -10.83 9.49 30.89 0.29 -10.53 16 14 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 15 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 16 N -0.86 -25.17 13.67 55.48 0.76 -24.42 16 17 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 21 C -0.26 -5.54 9.08 -39.21 -0.36 -5.89 16 22 C -0.11 -1.02 4.58 -26.73 -0.12 -1.15 16 23 C -0.13 -1.39 5.70 -26.73 -0.15 -1.55 16 24 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 25 C -0.13 -1.51 5.63 -26.73 -0.15 -1.66 16 26 C -0.09 -0.94 3.87 -26.73 -0.10 -1.04 16 27 H 0.06 0.52 6.66 -51.93 -0.35 0.18 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.67 7.21 -51.93 -0.37 0.30 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.56 7.75 -51.93 -0.40 0.16 16 32 H 0.40 5.03 7.66 -40.82 -0.31 4.71 16 33 H 0.12 2.31 6.24 -52.49 -0.33 1.98 16 34 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 36 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 38 H 0.07 0.60 7.33 -51.93 -0.38 0.22 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.91 7.22 -51.93 -0.37 0.54 16 42 H 0.06 0.51 8.14 -51.94 -0.42 0.09 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.27 5.74 -51.93 -0.30 0.97 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.80 6.36 -51.93 -0.33 0.47 16 LS Contribution 362.90 15.07 5.47 5.47 Total: -1.00 -31.55 362.90 -8.53 -40.08 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -7.08 Total: 9.39 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -2.66 Total: -21.74 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.71 Total: -34.50 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.06 Total: -13.92 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.55 -8.53 -40.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273898021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.967 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds