Wall clock time and date at job start Tue Mar 31 2020 11:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46697 * 2 1 4 4 C 1.50704 * 109.47604 * 64.72182 * 3 2 1 5 5 O 1.21282 * 120.00217 * 246.14578 * 4 3 2 6 6 N 1.34777 * 119.99877 * 66.13862 * 4 3 2 7 7 C 1.39918 * 120.00109 * 175.81267 * 6 4 3 8 8 C 1.38962 * 120.03661 * 35.19927 * 7 6 4 9 9 C 1.38165 * 120.06981 * 180.02562 * 8 7 6 10 10 C 1.38169 * 120.13573 * 359.97438 * 9 8 7 11 11 C 1.38905 * 120.07090 * 0.02562 * 10 9 8 12 12 O 1.35754 * 120.03347 * 179.97438 * 11 10 9 13 13 C 1.34828 * 116.99843 * 174.37872 * 12 11 10 14 14 H 1.08001 * 120.00650 * 5.04464 * 13 12 11 15 15 C 1.38655 * 119.99521 * 185.03895 * 13 12 11 16 16 N 1.31551 * 120.00516 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99655 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47393 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47162 * 120.00233 * 17 15 13 20 20 H 1.48499 * 109.46950 * 239.99742 * 17 15 13 21 21 C 1.38715 * 120.03714 * 215.50526 * 7 6 4 22 22 C 1.53007 * 109.46979 * 184.72180 * 3 2 1 23 23 C 1.52996 * 109.46979 * 179.97438 * 22 3 2 24 24 C 1.53000 * 109.47195 * 299.99578 * 23 22 3 25 25 C 1.52999 * 109.46995 * 60.00489 * 24 23 22 26 26 C 1.52998 * 109.47201 * 300.00055 * 25 24 23 27 27 H 1.08999 * 109.46978 * 65.16814 * 1 2 3 28 28 H 1.09004 * 109.47113 * 185.16722 * 1 2 3 29 29 H 1.08999 * 109.47422 * 305.16785 * 1 2 3 30 30 H 1.08997 * 109.47368 * 239.99925 * 2 1 3 31 31 H 1.09000 * 109.47023 * 119.99575 * 2 1 3 32 32 H 0.96999 * 120.00039 * 355.81106 * 6 4 3 33 33 H 1.07998 * 119.96551 * 0.02562 * 8 7 6 34 34 H 1.08000 * 119.93233 * 179.97438 * 9 8 7 35 35 H 1.07995 * 119.96391 * 180.02562 * 10 9 8 36 36 H 0.97001 * 120.00798 * 180.02562 * 16 15 13 37 37 H 1.08001 * 120.06969 * 359.97438 * 21 7 6 38 38 H 1.09001 * 109.46627 * 299.99953 * 22 3 2 39 39 H 1.09000 * 109.46862 * 59.99617 * 22 3 2 40 40 H 1.09006 * 109.46597 * 179.97438 * 23 22 3 41 41 H 1.09000 * 109.47637 * 60.00091 * 23 22 3 42 42 H 1.08988 * 109.47109 * 300.00062 * 24 23 22 43 43 H 1.09005 * 109.47126 * 180.02562 * 24 23 22 44 44 H 1.08999 * 109.47273 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.47308 * 59.99701 * 25 24 23 46 46 H 1.09001 * 109.46701 * 300.00019 * 26 25 24 47 47 H 1.08997 * 109.47578 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6353 2.1184 1.2848 5 8 0.8441 3.0373 1.2635 6 7 2.1528 1.7017 2.4574 7 6 1.8457 2.3843 3.6396 8 6 0.5837 2.9388 3.8148 9 6 0.2799 3.6135 4.9817 10 6 1.2291 3.7385 5.9779 11 6 2.4924 3.1863 5.8088 12 8 3.4246 3.3100 6.7879 13 6 4.5888 2.6534 6.6110 14 1 4.7784 2.1297 5.6857 15 6 5.5429 2.6506 7.6172 16 7 5.3119 3.2881 8.7445 17 14 7.1562 1.7414 7.3719 18 1 7.1697 1.1109 6.0276 19 1 8.2857 2.6994 7.4802 20 1 7.2960 0.6917 8.4130 21 6 2.8028 2.5136 4.6353 22 6 3.5654 1.4442 -0.1187 23 6 4.0752 2.8867 -0.1194 24 6 3.4706 3.6408 -1.3054 25 6 1.9452 3.6392 -1.1867 26 6 1.4352 2.1967 -1.1860 27 1 -0.3633 0.4316 -0.9326 28 1 -0.3633 -1.0235 0.0926 29 1 -0.3634 0.5919 0.8401 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.7380 0.9285 2.4818 33 1 -0.1605 2.8424 3.0381 34 1 -0.7015 4.0440 5.1154 35 1 0.9885 4.2660 6.8890 36 1 5.9795 3.2865 9.4483 37 1 3.7858 2.0874 4.4997 38 1 3.9961 0.9065 0.7260 39 1 3.8580 0.9553 -1.0480 40 1 5.1620 2.8878 -0.2035 41 1 3.7826 3.3760 0.8096 42 1 3.7632 3.1516 -2.2343 43 1 3.8342 4.6684 -1.3061 44 1 1.5144 4.1760 -2.0318 45 1 1.6525 4.1284 -0.2576 46 1 1.7279 1.7074 -2.1150 47 1 0.3485 2.1954 -1.1018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273898021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:30 Heat of formation + Delta-G solvation = -79.256617 kcal Electronic energy + Delta-G solvation = -27519.212369 eV Core-core repulsion = 23858.855824 eV Total energy + Delta-G solvation = -3660.356545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.25479 -40.71686 -38.97228 -37.70834 -35.78973 -34.95265 -34.22756 -31.87709 -30.89794 -30.37642 -29.77426 -27.33433 -25.34439 -24.37814 -23.54326 -23.44107 -22.37934 -21.38287 -20.56730 -19.59991 -19.17146 -17.60362 -17.25171 -16.91591 -16.67562 -16.19036 -15.95560 -15.76815 -15.54842 -15.42110 -15.11136 -14.78302 -14.64303 -14.35564 -14.26390 -14.08922 -13.59851 -13.55768 -13.22438 -13.03981 -12.98413 -12.74358 -12.69676 -12.49773 -12.41376 -12.30799 -12.08917 -11.99141 -11.90339 -11.53792 -11.42971 -11.18031 -10.98570 -10.89074 -10.76460 -10.40729 -9.35755 -8.89035 -8.46754 -6.15822 0.40193 0.68576 1.35469 1.43856 1.53813 1.66816 2.08513 2.17650 2.82765 3.15377 3.47573 3.50873 3.57113 3.74634 3.95932 4.11247 4.16183 4.21650 4.31449 4.32932 4.41870 4.44379 4.48312 4.58107 4.62215 4.67960 4.69725 4.75143 4.79500 4.93714 5.01394 5.05269 5.07740 5.10468 5.10918 5.17677 5.24409 5.29088 5.33023 5.36419 5.40666 5.45551 5.51100 5.59530 5.66247 5.68326 6.01300 6.17597 6.49342 6.97464 7.19061 7.76878 8.76469 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.003809 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.701350 B = 7350.195706 C = 8216.191847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.110 4.110 3 C -0.067 4.067 4 C 0.526 3.474 5 O -0.549 6.549 6 N -0.664 5.664 7 C 0.188 3.812 8 C -0.200 4.200 9 C -0.054 4.054 10 C -0.215 4.215 11 C 0.134 3.866 12 O -0.227 6.227 13 C -0.413 4.413 14 H 0.103 0.897 15 C -0.022 4.022 16 N -0.920 5.920 17 Si 1.018 2.982 18 H -0.248 1.248 19 H -0.270 1.270 20 H -0.268 1.268 21 C -0.260 4.260 22 C -0.107 4.107 23 C -0.129 4.129 24 C -0.114 4.114 25 C -0.134 4.134 26 C -0.090 4.090 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.027 0.973 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.417 0.583 33 H 0.132 0.868 34 H 0.152 0.848 35 H 0.118 0.882 36 H 0.273 0.727 37 H 0.128 0.872 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.025 0.975 42 H 0.085 0.915 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.047 0.953 46 H 0.097 0.903 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.192 -8.681 -23.115 25.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.070 4.070 4 C 0.315 3.685 5 O -0.425 6.425 6 N -0.309 5.309 7 C 0.093 3.907 8 C -0.220 4.220 9 C -0.073 4.073 10 C -0.235 4.235 11 C 0.083 3.917 12 O -0.133 6.133 13 C -0.489 4.489 14 H 0.120 0.880 15 C -0.219 4.219 16 N -0.558 5.558 17 Si 0.837 3.163 18 H -0.171 1.171 19 H -0.196 1.196 20 H -0.193 1.193 21 C -0.281 4.281 22 C -0.144 4.144 23 C -0.166 4.166 24 C -0.152 4.152 25 C -0.171 4.171 26 C -0.128 4.128 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.124 0.876 31 H 0.089 0.911 32 H 0.255 0.745 33 H 0.150 0.850 34 H 0.169 0.831 35 H 0.136 0.864 36 H 0.082 0.918 37 H 0.145 0.855 38 H 0.091 0.909 39 H 0.125 0.875 40 H 0.094 0.906 41 H 0.044 0.956 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.115 0.885 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.647 -7.880 -22.802 24.569 hybrid contribution 0.885 -0.071 0.877 1.248 sum -3.762 -7.951 -21.926 23.624 Atomic orbital electron populations 1.21869 0.95860 1.02102 1.01638 1.21650 0.96086 0.92378 1.04622 1.20997 0.98000 0.97091 0.90879 1.21343 0.79277 0.82585 0.85247 1.90629 1.34546 1.30344 1.87027 1.43565 1.50376 1.32057 1.04937 1.17482 0.92496 0.94812 0.85869 1.20961 0.95926 1.05958 0.99203 1.20934 0.98768 0.96164 0.91410 1.20471 0.91974 1.08856 1.02183 1.19585 0.89934 0.93735 0.88442 1.83975 1.24259 1.64351 1.40748 1.21848 0.91522 1.31850 1.03699 0.87995 1.26592 1.03342 0.98112 0.93887 1.70189 1.36901 1.42273 1.06428 0.84543 0.74676 0.77509 0.79563 1.17099 1.19564 1.19312 1.20845 1.00351 1.11010 0.95923 1.21697 0.91248 0.96752 1.04698 1.21605 1.00989 0.96198 0.97843 1.21521 0.94996 1.00009 0.98654 1.21711 0.95961 0.97586 1.01890 1.21442 1.00170 0.94632 0.96522 0.91404 0.91186 0.95384 0.87565 0.91088 0.74508 0.84993 0.83073 0.86404 0.91834 0.85450 0.90932 0.87466 0.90552 0.95579 0.89665 0.92942 0.91422 0.93440 0.88469 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.15 71.98 0.66 -1.82 16 2 C -0.11 -1.46 4.97 30.59 0.15 -1.31 16 3 C -0.07 -1.20 0.42 -52.93 -0.02 -1.22 16 4 C 0.53 14.40 3.59 87.66 0.32 14.72 16 5 O -0.55 -18.90 11.37 -3.03 -0.03 -18.93 16 6 N -0.66 -19.30 5.10 -303.56 -1.55 -20.84 16 7 C 0.19 7.13 6.29 38.14 0.24 7.37 16 8 C -0.20 -7.55 8.69 22.43 0.19 -7.36 16 9 C -0.05 -2.03 10.03 22.24 0.22 -1.81 16 10 C -0.22 -9.58 9.99 22.41 0.22 -9.36 16 11 C 0.13 6.82 6.64 22.56 0.15 6.97 16 12 O -0.23 -13.69 9.76 -22.77 -0.22 -13.91 16 13 C -0.41 -23.79 9.49 67.92 0.64 -23.15 16 14 H 0.10 5.34 5.20 -2.91 -0.02 5.32 16 15 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 16 N -0.92 -56.19 13.67 21.61 0.30 -55.89 16 17 Si 1.02 41.99 29.55 68.60 2.03 44.02 16 18 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 19 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 20 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 21 C -0.26 -11.49 9.08 22.51 0.20 -11.29 16 22 C -0.11 -1.63 4.58 30.60 0.14 -1.49 16 23 C -0.13 -2.60 5.70 30.59 0.17 -2.43 16 24 C -0.11 -2.10 5.92 30.59 0.18 -1.92 16 25 C -0.13 -2.85 5.63 30.59 0.17 -2.68 16 26 C -0.09 -1.57 3.87 30.59 0.12 -1.45 16 27 H 0.07 0.97 6.66 -2.39 -0.02 0.95 16 28 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.03 0.60 7.21 -2.39 -0.02 0.58 16 30 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.92 7.75 -2.39 -0.02 0.90 16 32 H 0.42 9.73 7.66 -92.71 -0.71 9.02 16 33 H 0.13 4.83 6.24 -2.91 -0.02 4.81 16 34 H 0.15 4.51 8.06 -2.91 -0.02 4.49 16 35 H 0.12 5.12 8.06 -2.91 -0.02 5.09 16 36 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.13 5.55 5.64 -2.91 -0.02 5.53 16 38 H 0.07 1.05 7.33 -2.39 -0.02 1.03 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.03 0.72 7.22 -2.39 -0.02 0.70 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.05 1.02 8.14 -2.38 -0.02 1.01 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.05 1.40 5.74 -2.39 -0.01 1.38 16 46 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.06 1.24 6.36 -2.39 -0.02 1.23 16 Total: -1.00 -74.06 362.90 5.03 -69.03 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.27 Total: 35.51 kcal Atomic # 6 Polarization: -43.22 SS G_CDS: 4.24 Total: -38.99 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -1.25 Total: -76.73 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.26 Total: -32.84 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -74.06 5.03 -69.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273898021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.224 kcal (2) G-P(sol) polarization free energy of solvation -74.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds