Wall clock time and date at job start Tue Mar 31 2020 12:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47494 * 2 1 4 4 C 1.53003 * 109.49555 * 65.33094 * 3 2 1 5 5 O 1.42903 * 109.47010 * 63.66026 * 4 3 2 6 6 C 1.53046 * 109.49740 * 305.27225 * 3 2 1 7 7 C 1.53040 * 109.53317 * 301.41006 * 6 3 2 8 8 C 1.53188 * 109.31575 * 298.63782 * 7 6 3 9 9 N 1.46919 * 108.77621 * 54.63156 * 8 7 6 10 10 C 1.34776 * 120.62709 * 126.37418 * 9 8 7 11 11 O 1.21592 * 120.00301 * 175.80694 * 10 9 8 12 12 C 1.47645 * 120.00357 * 355.79971 * 10 9 8 13 13 C 1.40006 * 119.89976 * 225.94205 * 12 10 9 14 14 C 1.36319 * 120.10841 * 179.97438 * 13 12 10 15 15 C 1.40882 * 119.88930 * 0.03171 * 14 13 12 16 16 C 1.41118 * 120.10145 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00188 * 330.65850 * 16 15 14 18 18 C 1.40233 * 119.99590 * 150.65448 * 16 15 14 19 19 N 1.30643 * 120.00104 * 349.22690 * 18 16 15 20 20 Si 1.86796 * 119.99529 * 169.23418 * 18 16 15 21 21 H 1.48498 * 109.47049 * 179.97438 * 20 18 16 22 22 H 1.48504 * 109.46870 * 299.99762 * 20 18 16 23 23 H 1.48502 * 109.47620 * 59.99637 * 20 18 16 24 24 C 1.40887 * 119.79900 * 0.24664 * 15 14 13 25 25 C 1.36324 * 119.88517 * 359.46320 * 24 15 14 26 26 C 1.46926 * 118.74353 * 306.64635 * 9 8 7 27 27 H 1.09005 * 109.47094 * 305.04328 * 1 2 3 28 28 H 1.09002 * 109.46984 * 65.04200 * 1 2 3 29 29 H 1.09001 * 109.47456 * 185.04464 * 1 2 3 30 30 H 1.09001 * 109.47475 * 239.99542 * 2 1 3 31 31 H 1.09000 * 109.47188 * 120.00211 * 2 1 3 32 32 H 1.09000 * 109.47138 * 183.65687 * 4 3 2 33 33 H 1.09003 * 109.47452 * 303.65613 * 4 3 2 34 34 H 0.96700 * 113.99635 * 179.97438 * 5 4 3 35 35 H 1.08993 * 109.45999 * 181.39273 * 6 3 2 36 36 H 1.09000 * 109.44928 * 61.42303 * 6 3 2 37 37 H 1.09004 * 109.49710 * 178.68282 * 7 6 3 38 38 H 1.09006 * 109.52211 * 58.60528 * 7 6 3 39 39 H 1.09006 * 109.58086 * 294.84695 * 8 7 6 40 40 H 1.09001 * 109.70658 * 174.49718 * 8 7 6 41 41 H 1.08005 * 119.94922 * 359.97438 * 13 12 10 42 42 H 1.07998 * 120.05334 * 180.02562 * 14 13 12 43 43 H 0.97003 * 119.99407 * 179.97438 * 19 18 16 44 44 H 1.07999 * 120.05899 * 179.74886 * 24 15 14 45 45 H 1.08000 * 119.94587 * 180.29881 * 25 24 15 46 46 H 1.08993 * 109.58796 * 173.14133 * 26 9 8 47 47 H 1.09000 * 109.58527 * 293.56788 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6427 2.1245 1.3107 5 8 2.2871 1.4675 2.4040 6 6 1.4249 2.2018 -1.1778 7 6 1.7939 1.5008 -2.4873 8 6 3.3169 1.5043 -2.6522 9 7 3.9234 0.9054 -1.4555 10 6 4.7911 -0.1200 -1.5654 11 8 5.3445 -0.5571 -0.5749 12 6 5.0696 -0.7128 -2.8886 13 6 5.0830 -2.1045 -3.0410 14 6 5.3391 -2.6564 -4.2609 15 6 5.5913 -1.8239 -5.3691 16 6 5.8575 -2.3905 -6.6339 17 1 6.3277 -3.3602 -6.7030 18 6 5.5114 -1.6942 -7.8009 19 7 4.7595 -0.6284 -7.7269 20 14 6.1254 -2.2908 -9.4611 21 1 5.6229 -1.3885 -10.5281 22 1 7.6104 -2.2892 -9.4694 23 1 5.6306 -3.6695 -9.7057 24 6 5.5826 -0.4242 -5.2097 25 6 5.3196 0.1186 -3.9871 26 6 3.5615 1.4416 -0.1363 27 1 -0.3633 0.5901 0.8414 28 1 -0.3633 0.4336 -0.9317 29 1 -0.3634 -1.0237 0.0904 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.9492 3.1702 1.2835 33 1 0.5617 2.0660 1.4377 34 1 2.0806 1.8483 3.2685 35 1 1.8077 3.2222 -1.1918 36 1 0.3404 2.2222 -1.0699 37 1 1.3362 2.0287 -3.3240 38 1 1.4327 0.4726 -2.4644 39 1 3.6696 2.5293 -2.7667 40 1 3.5927 0.9226 -3.5318 41 1 4.8901 -2.7419 -2.1907 42 1 5.3488 -3.7300 -4.3775 43 1 4.5204 -0.1466 -8.5342 44 1 5.7793 0.2179 -6.0555 45 1 5.3079 1.1916 -3.8648 46 1 3.9965 0.8171 0.6439 47 1 3.9347 2.4613 -0.0414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275161576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:21 Heat of formation + Delta-G solvation = -75.392384 kcal Electronic energy + Delta-G solvation = -27563.582003 eV Core-core repulsion = 23903.393024 eV Total energy + Delta-G solvation = -3660.188979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.36369 -38.43891 -37.02096 -36.24316 -34.11955 -33.68834 -31.51509 -30.67892 -29.67664 -29.50426 -26.54685 -25.66678 -24.95276 -23.43833 -22.10002 -21.41938 -20.90153 -19.04107 -18.05481 -17.46508 -17.41742 -16.54850 -15.90468 -15.57157 -15.16202 -15.02819 -14.68792 -14.10443 -14.00440 -13.68094 -13.46076 -13.23523 -13.01229 -12.77834 -12.63981 -12.49843 -12.33080 -12.13892 -11.92238 -11.79431 -11.43914 -11.26440 -11.21596 -11.05092 -10.91545 -10.82850 -10.73448 -10.46765 -10.26661 -10.08990 -10.02068 -10.00604 -9.49414 -9.34655 -8.89112 -8.12805 -7.64334 -7.43839 -6.90871 -4.55615 2.37822 2.97814 2.98883 3.00064 3.01990 3.52883 3.75472 3.82163 4.06668 4.53004 4.71355 4.78005 4.84022 5.08385 5.19895 5.28789 5.35466 5.41116 5.46587 5.52945 5.57252 5.62655 5.70714 5.72355 5.82986 5.96005 5.98602 6.07039 6.15123 6.19303 6.25979 6.26455 6.30709 6.32552 6.44770 6.60949 6.79862 6.89883 7.00593 7.09611 7.16578 7.48027 7.51765 7.63396 7.84364 7.89455 8.09439 8.13474 8.45458 8.70137 8.78858 9.00808 10.01493 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023329 B = 0.003273 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.952939 B = 8553.418895 C = 8961.587894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.069 4.069 4 C 0.087 3.913 5 O -0.565 6.565 6 C -0.109 4.109 7 C -0.134 4.134 8 C 0.093 3.907 9 N -0.613 5.613 10 C 0.578 3.422 11 O -0.564 6.564 12 C -0.266 4.266 13 C -0.036 4.036 14 C -0.229 4.229 15 C 0.127 3.873 16 C -0.452 4.452 17 H 0.081 0.919 18 C 0.074 3.926 19 N -0.787 5.787 20 Si 0.914 3.086 21 H -0.277 1.277 22 H -0.262 1.262 23 H -0.264 1.264 24 C -0.166 4.166 25 C -0.074 4.074 26 C 0.129 3.871 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.375 0.625 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.284 0.716 44 H 0.122 0.878 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.297 8.210 9.020 15.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.070 4.070 4 C 0.009 3.991 5 O -0.370 6.370 6 C -0.146 4.146 7 C -0.173 4.173 8 C -0.030 4.030 9 N -0.346 5.346 10 C 0.372 3.628 11 O -0.444 6.444 12 C -0.271 4.271 13 C -0.055 4.055 14 C -0.249 4.249 15 C 0.124 3.876 16 C -0.481 4.481 17 H 0.099 0.901 18 C -0.145 4.145 19 N -0.412 5.412 20 Si 0.738 3.262 21 H -0.202 1.202 22 H -0.187 1.187 23 H -0.188 1.188 24 C -0.186 4.186 25 C -0.093 4.093 26 C 0.006 3.994 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.221 0.779 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.134 0.866 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.095 0.905 44 H 0.140 0.860 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.873 7.791 8.889 14.780 hybrid contribution -0.214 0.338 -0.391 0.559 sum -9.087 8.129 8.499 14.862 Atomic orbital electron populations 1.21877 0.96356 1.01352 1.01313 1.21487 0.95096 0.95152 1.02998 1.20866 0.96457 0.96591 0.93048 1.22219 0.95734 0.94634 0.86534 1.86560 1.73051 1.60258 1.17116 1.21574 1.00328 0.98619 0.94124 1.21937 0.96661 1.01825 0.96844 1.22164 0.92140 0.98626 0.90022 1.47983 1.45108 1.35248 1.06307 1.18755 0.77060 0.77448 0.89548 1.90656 1.51228 1.62367 1.40112 1.18886 1.22155 0.94028 0.92000 1.20221 0.96430 0.92622 0.96209 1.20740 1.12240 0.98204 0.93692 1.17747 0.85870 0.91796 0.92220 1.19724 1.34140 1.04063 0.90148 0.90072 1.26004 0.92795 0.93937 1.01765 1.69691 1.25067 1.14780 1.31620 0.86263 0.80335 0.79682 0.79912 1.20175 1.18678 1.18843 1.21020 1.06192 0.95632 0.95724 1.20534 0.99084 0.96891 0.92774 1.21289 0.92881 0.98856 0.86363 0.93092 0.92579 0.93021 0.91219 0.91423 0.93884 0.93281 0.77910 0.92012 0.91556 0.90879 0.90898 0.92419 0.86650 0.88816 0.88422 0.90488 0.86036 0.88665 0.88525 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.11 37.16 0.34 -1.32 16 2 C -0.11 -1.50 4.33 -26.74 -0.12 -1.62 16 3 C -0.07 -0.85 0.38 -154.61 -0.06 -0.90 16 4 C 0.09 0.86 5.77 37.16 0.21 1.08 16 5 O -0.57 -6.12 12.34 -35.23 -0.43 -6.56 16 6 C -0.11 -1.18 4.18 -26.69 -0.11 -1.29 16 7 C -0.13 -1.71 5.68 -26.61 -0.15 -1.86 16 8 C 0.09 1.43 5.20 -3.72 -0.02 1.41 16 9 N -0.61 -10.80 2.33 -174.22 -0.41 -11.21 16 10 C 0.58 12.60 7.27 -12.42 -0.09 12.51 16 11 O -0.56 -13.90 16.42 5.28 0.09 -13.82 16 12 C -0.27 -6.09 5.20 -104.73 -0.54 -6.63 16 13 C -0.04 -0.84 9.62 -39.61 -0.38 -1.22 16 14 C -0.23 -5.54 9.73 -39.27 -0.38 -5.92 16 15 C 0.13 3.22 5.54 -106.80 -0.59 2.63 16 16 C -0.45 -11.34 9.05 -37.74 -0.34 -11.69 16 17 H 0.08 1.96 7.87 -52.49 -0.41 1.54 16 18 C 0.07 1.74 5.25 -17.31 -0.09 1.65 16 19 N -0.79 -18.85 10.88 55.56 0.60 -18.24 16 20 Si 0.91 17.61 29.57 -169.99 -5.03 12.59 16 21 H -0.28 -5.19 7.11 56.52 0.40 -4.78 16 22 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 23 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 24 C -0.17 -4.06 8.59 -39.27 -0.34 -4.40 16 25 C -0.07 -1.64 7.24 -39.61 -0.29 -1.93 16 26 C 0.13 2.00 4.79 -3.93 -0.02 1.99 16 27 H 0.05 0.49 6.29 -51.93 -0.33 0.16 16 28 H 0.06 0.58 6.49 -51.93 -0.34 0.24 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 1.13 6.14 -51.93 -0.32 0.81 16 31 H 0.07 1.03 7.64 -51.93 -0.40 0.64 16 32 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.42 6.32 -51.93 -0.33 0.09 16 34 H 0.37 2.23 9.12 45.56 0.42 2.64 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.62 6.55 -51.93 -0.34 0.28 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.03 6.31 -51.93 -0.33 0.70 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.12 2.05 4.21 -51.93 -0.22 1.84 16 41 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 42 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 43 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 44 H 0.12 3.02 6.27 -52.49 -0.33 2.69 16 45 H 0.10 1.89 6.56 -52.49 -0.34 1.55 16 46 H 0.10 1.77 6.67 -51.93 -0.35 1.42 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 359.51 15.07 5.42 5.42 Total: -1.00 -29.26 359.51 -8.86 -38.11 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.13 Total: 11.22 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -2.97 Total: -17.51 kcal Atomic # 7 Polarization: -29.65 SS G_CDS: 0.20 Total: -29.45 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.35 Total: -20.38 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.26 -8.86 -38.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275161576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.281 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds