Wall clock time and date at job start Tue Mar 31 2020 12:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47494 * 2 1 4 4 C 1.53003 * 109.49555 * 65.33094 * 3 2 1 5 5 O 1.42903 * 109.47010 * 63.66026 * 4 3 2 6 6 C 1.53046 * 109.49740 * 305.27225 * 3 2 1 7 7 C 1.53040 * 109.53317 * 301.41006 * 6 3 2 8 8 C 1.53188 * 109.31575 * 298.63782 * 7 6 3 9 9 N 1.46919 * 108.77621 * 54.63156 * 8 7 6 10 10 C 1.34776 * 120.62709 * 126.37418 * 9 8 7 11 11 O 1.21592 * 120.00301 * 175.80694 * 10 9 8 12 12 C 1.47645 * 120.00357 * 355.79971 * 10 9 8 13 13 C 1.40006 * 119.89976 * 225.94205 * 12 10 9 14 14 C 1.36319 * 120.10841 * 179.97438 * 13 12 10 15 15 C 1.40882 * 119.88930 * 0.03171 * 14 13 12 16 16 C 1.41118 * 120.10145 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00188 * 330.65850 * 16 15 14 18 18 C 1.40233 * 119.99590 * 150.65448 * 16 15 14 19 19 N 1.30643 * 120.00104 * 349.22690 * 18 16 15 20 20 Si 1.86796 * 119.99529 * 169.23418 * 18 16 15 21 21 H 1.48498 * 109.47049 * 179.97438 * 20 18 16 22 22 H 1.48504 * 109.46870 * 299.99762 * 20 18 16 23 23 H 1.48502 * 109.47620 * 59.99637 * 20 18 16 24 24 C 1.40887 * 119.79900 * 0.24664 * 15 14 13 25 25 C 1.36324 * 119.88517 * 359.46320 * 24 15 14 26 26 C 1.46926 * 118.74353 * 306.64635 * 9 8 7 27 27 H 1.09005 * 109.47094 * 305.04328 * 1 2 3 28 28 H 1.09002 * 109.46984 * 65.04200 * 1 2 3 29 29 H 1.09001 * 109.47456 * 185.04464 * 1 2 3 30 30 H 1.09001 * 109.47475 * 239.99542 * 2 1 3 31 31 H 1.09000 * 109.47188 * 120.00211 * 2 1 3 32 32 H 1.09000 * 109.47138 * 183.65687 * 4 3 2 33 33 H 1.09003 * 109.47452 * 303.65613 * 4 3 2 34 34 H 0.96700 * 113.99635 * 179.97438 * 5 4 3 35 35 H 1.08993 * 109.45999 * 181.39273 * 6 3 2 36 36 H 1.09000 * 109.44928 * 61.42303 * 6 3 2 37 37 H 1.09004 * 109.49710 * 178.68282 * 7 6 3 38 38 H 1.09006 * 109.52211 * 58.60528 * 7 6 3 39 39 H 1.09006 * 109.58086 * 294.84695 * 8 7 6 40 40 H 1.09001 * 109.70658 * 174.49718 * 8 7 6 41 41 H 1.08005 * 119.94922 * 359.97438 * 13 12 10 42 42 H 1.07998 * 120.05334 * 180.02562 * 14 13 12 43 43 H 0.97003 * 119.99407 * 179.97438 * 19 18 16 44 44 H 1.07999 * 120.05899 * 179.74886 * 24 15 14 45 45 H 1.08000 * 119.94587 * 180.29881 * 25 24 15 46 46 H 1.08993 * 109.58796 * 173.14133 * 26 9 8 47 47 H 1.09000 * 109.58527 * 293.56788 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6427 2.1245 1.3107 5 8 2.2871 1.4675 2.4040 6 6 1.4249 2.2018 -1.1778 7 6 1.7939 1.5008 -2.4873 8 6 3.3169 1.5043 -2.6522 9 7 3.9234 0.9054 -1.4555 10 6 4.7911 -0.1200 -1.5654 11 8 5.3445 -0.5571 -0.5749 12 6 5.0696 -0.7128 -2.8886 13 6 5.0830 -2.1045 -3.0410 14 6 5.3391 -2.6564 -4.2609 15 6 5.5913 -1.8239 -5.3691 16 6 5.8575 -2.3905 -6.6339 17 1 6.3277 -3.3602 -6.7030 18 6 5.5114 -1.6942 -7.8009 19 7 4.7595 -0.6284 -7.7269 20 14 6.1254 -2.2908 -9.4611 21 1 5.6229 -1.3885 -10.5281 22 1 7.6104 -2.2892 -9.4694 23 1 5.6306 -3.6695 -9.7057 24 6 5.5826 -0.4242 -5.2097 25 6 5.3196 0.1186 -3.9871 26 6 3.5615 1.4416 -0.1363 27 1 -0.3633 0.5901 0.8414 28 1 -0.3633 0.4336 -0.9317 29 1 -0.3634 -1.0237 0.0904 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.9492 3.1702 1.2835 33 1 0.5617 2.0660 1.4377 34 1 2.0806 1.8483 3.2685 35 1 1.8077 3.2222 -1.1918 36 1 0.3404 2.2222 -1.0699 37 1 1.3362 2.0287 -3.3240 38 1 1.4327 0.4726 -2.4644 39 1 3.6696 2.5293 -2.7667 40 1 3.5927 0.9226 -3.5318 41 1 4.8901 -2.7419 -2.1907 42 1 5.3488 -3.7300 -4.3775 43 1 4.5204 -0.1466 -8.5342 44 1 5.7793 0.2179 -6.0555 45 1 5.3079 1.1916 -3.8648 46 1 3.9965 0.8171 0.6439 47 1 3.9347 2.4613 -0.0414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275161576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:19 Heat of formation + Delta-G solvation = -92.674349 kcal Electronic energy + Delta-G solvation = -27564.331406 eV Core-core repulsion = 23903.393024 eV Total energy + Delta-G solvation = -3660.938381 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.69136 -39.89971 -38.74849 -37.27978 -35.69535 -35.16754 -32.67843 -32.25342 -31.38433 -30.94150 -28.10549 -26.76123 -26.33751 -24.56347 -23.39191 -23.09482 -22.59642 -20.57539 -19.35784 -19.10647 -18.25970 -18.05101 -17.41450 -17.02001 -16.53190 -16.19657 -16.02028 -15.70219 -15.35917 -14.98839 -14.78548 -14.55173 -14.40972 -14.11804 -14.03718 -13.86952 -13.70607 -13.52526 -13.40901 -13.12164 -12.88612 -12.82054 -12.65496 -12.42214 -12.29606 -11.98025 -11.88277 -11.76362 -11.73767 -11.34036 -11.31106 -11.13964 -11.10463 -10.77740 -10.60145 -9.58326 -9.50699 -9.29374 -8.69111 -6.45958 0.56199 1.09835 1.40834 1.45944 1.52226 1.91790 2.17825 2.21619 2.73456 3.30182 3.62538 3.72817 3.76356 3.89382 4.04726 4.08592 4.19319 4.31164 4.36325 4.37183 4.47396 4.52085 4.59607 4.63541 4.68050 4.72942 4.78142 4.89374 4.92115 4.97734 5.03123 5.06576 5.11467 5.16196 5.17682 5.28186 5.29647 5.31908 5.36269 5.58207 5.60521 5.68346 5.80143 5.97242 6.00434 6.24129 6.51011 6.56823 6.82120 6.89876 7.00577 7.32506 8.25739 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023329 B = 0.003273 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.952939 B = 8553.418895 C = 8961.587894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C -0.066 4.066 4 C 0.090 3.910 5 O -0.593 6.593 6 C -0.102 4.102 7 C -0.131 4.131 8 C 0.087 3.913 9 N -0.602 5.602 10 C 0.573 3.427 11 O -0.603 6.603 12 C -0.273 4.273 13 C -0.046 4.046 14 C -0.243 4.243 15 C 0.102 3.898 16 C -0.485 4.485 17 H 0.080 0.920 18 C 0.038 3.962 19 N -0.809 5.809 20 Si 0.986 3.014 21 H -0.264 1.264 22 H -0.261 1.261 23 H -0.261 1.261 24 C -0.182 4.182 25 C -0.059 4.059 26 C 0.127 3.873 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.395 0.605 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.294 0.706 44 H 0.115 0.885 45 H 0.120 0.880 46 H 0.062 0.938 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.119 10.659 8.617 17.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C -0.067 4.067 4 C 0.012 3.988 5 O -0.401 6.401 6 C -0.139 4.139 7 C -0.169 4.169 8 C -0.034 4.034 9 N -0.333 5.333 10 C 0.366 3.634 11 O -0.487 6.487 12 C -0.277 4.277 13 C -0.065 4.065 14 C -0.262 4.262 15 C 0.099 3.901 16 C -0.513 4.513 17 H 0.099 0.901 18 C -0.179 4.179 19 N -0.433 5.433 20 Si 0.806 3.194 21 H -0.188 1.188 22 H -0.185 1.185 23 H -0.185 1.185 24 C -0.202 4.202 25 C -0.078 4.078 26 C 0.004 3.996 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.245 0.755 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.122 0.878 43 H 0.105 0.895 44 H 0.133 0.867 45 H 0.138 0.862 46 H 0.081 0.919 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.740 10.284 8.508 17.131 hybrid contribution 0.320 -0.394 -0.182 0.539 sum -10.419 9.890 8.326 16.604 Atomic orbital electron populations 1.21825 0.93828 1.01755 1.02716 1.21402 0.97253 0.95814 1.00011 1.20893 0.93765 0.96220 0.95832 1.22237 0.96860 0.94975 0.84754 1.86526 1.73645 1.61263 1.18657 1.21568 1.01841 0.98843 0.91643 1.21912 0.94281 1.01505 0.99204 1.22318 0.94280 0.98984 0.87849 1.47986 1.43437 1.33673 1.08247 1.18632 0.77800 0.78480 0.88497 1.90627 1.53155 1.64004 1.40867 1.19114 1.21623 0.93997 0.92936 1.20362 0.96605 0.93369 0.96138 1.20861 1.12911 0.98599 0.93848 1.18072 0.86567 0.92589 0.92902 1.19983 1.35508 1.04762 0.91047 0.90143 1.26806 0.92359 0.93869 1.04903 1.69719 1.25017 1.15362 1.33208 0.85183 0.79580 0.79307 0.75294 1.18755 1.18538 1.18547 1.21006 1.07609 0.95300 0.96269 1.20679 0.97352 0.98033 0.91761 1.21453 0.95494 0.98659 0.83947 0.91016 0.91488 0.93442 0.94667 0.94026 0.91777 0.91056 0.75542 0.89896 0.88991 0.88582 0.92827 0.89847 0.89357 0.88597 0.87836 0.89481 0.86725 0.86204 0.91928 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.11 71.98 0.66 -2.19 16 2 C -0.11 -2.90 4.33 30.59 0.13 -2.76 16 3 C -0.07 -1.49 0.38 -52.25 -0.02 -1.51 16 4 C 0.09 1.47 5.77 71.98 0.42 1.88 16 5 O -0.59 -11.82 12.34 -148.98 -1.84 -13.66 16 6 C -0.10 -1.80 4.18 30.62 0.13 -1.67 16 7 C -0.13 -3.03 5.68 30.67 0.17 -2.85 16 8 C 0.09 2.57 5.20 86.36 0.45 3.02 16 9 N -0.60 -21.17 2.33 -823.39 -1.92 -23.10 16 10 C 0.57 25.79 7.27 86.73 0.63 26.42 16 11 O -0.60 -31.10 16.42 -4.01 -0.07 -31.17 16 12 C -0.27 -12.88 5.20 -19.93 -0.10 -12.98 16 13 C -0.05 -2.24 9.62 22.25 0.21 -2.03 16 14 C -0.24 -12.27 9.73 22.47 0.22 -12.05 16 15 C 0.10 5.35 5.54 -21.28 -0.12 5.24 16 16 C -0.48 -24.97 9.05 23.46 0.21 -24.76 16 17 H 0.08 4.00 7.87 -2.91 -0.02 3.98 16 18 C 0.04 1.79 5.25 85.35 0.45 2.23 16 19 N -0.81 -38.78 10.88 21.87 0.24 -38.54 16 20 Si 0.99 35.67 29.57 68.60 2.03 37.70 16 21 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 22 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 23 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 24 C -0.18 -9.14 8.59 22.47 0.19 -8.95 16 25 C -0.06 -2.70 7.24 22.25 0.16 -2.54 16 26 C 0.13 3.84 4.79 86.22 0.41 4.25 16 27 H 0.07 1.13 6.29 -2.38 -0.01 1.11 16 28 H 0.07 1.18 6.49 -2.39 -0.02 1.17 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.03 1.17 6.14 -2.39 -0.01 1.16 16 31 H 0.04 1.31 7.64 -2.39 -0.02 1.29 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.88 6.32 -2.39 -0.02 0.86 16 34 H 0.39 3.84 9.12 -74.06 -0.68 3.17 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.09 1.25 6.55 -2.39 -0.02 1.23 16 37 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.05 1.46 6.31 -2.38 -0.02 1.45 16 39 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.09 3.12 4.21 -2.39 -0.01 3.11 16 41 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 42 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 43 H 0.29 12.61 8.29 -92.71 -0.77 11.84 16 44 H 0.11 5.84 6.27 -2.91 -0.02 5.82 16 45 H 0.12 4.72 6.56 -2.91 -0.02 4.70 16 46 H 0.06 2.36 6.67 -2.39 -0.02 2.34 16 47 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -67.04 359.51 2.96 -64.08 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: 0.32 Total: 35.95 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 4.20 Total: -31.27 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -1.68 Total: -61.64 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -1.90 Total: -44.83 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Total: -67.04 2.96 -64.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275161576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.595 kcal (2) G-P(sol) polarization free energy of solvation -67.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds