Wall clock time and date at job start Tue Mar 31 2020 12:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47067 * 2 1 4 4 C 1.53009 * 109.49436 * 303.70946 * 3 2 1 5 5 O 1.42901 * 109.46792 * 305.62833 * 4 3 2 6 6 C 1.53042 * 109.52480 * 63.78795 * 3 2 1 7 7 C 1.53039 * 109.53367 * 181.33492 * 6 3 2 8 8 C 1.53190 * 109.31592 * 298.63406 * 7 6 3 9 9 N 1.46932 * 108.77327 * 54.64120 * 8 7 6 10 10 C 1.34766 * 120.63262 * 126.37009 * 9 8 7 11 11 O 1.21588 * 120.00044 * 185.42069 * 10 9 8 12 12 C 1.47649 * 120.00197 * 5.42340 * 10 9 8 13 13 C 1.40010 * 119.89554 * 213.08450 * 12 10 9 14 14 C 1.36311 * 120.10714 * 179.71638 * 13 12 10 15 15 C 1.40890 * 119.89083 * 0.57726 * 14 13 12 16 16 C 1.41108 * 120.10614 * 179.67829 * 15 14 13 17 17 H 1.07993 * 120.00370 * 205.07831 * 16 15 14 18 18 C 1.40235 * 119.99633 * 25.07452 * 16 15 14 19 19 N 1.30638 * 120.00230 * 14.82418 * 18 16 15 20 20 Si 1.86802 * 119.99679 * 194.82077 * 18 16 15 21 21 H 1.48500 * 109.47024 * 89.99895 * 20 18 16 22 22 H 1.48494 * 109.47207 * 210.00026 * 20 18 16 23 23 H 1.48504 * 109.46949 * 330.00184 * 20 18 16 24 24 C 1.40883 * 119.79281 * 359.69246 * 15 14 13 25 25 C 1.36320 * 119.89193 * 0.02562 * 24 15 14 26 26 C 1.46928 * 118.73484 * 306.38802 * 9 8 7 27 27 H 1.09008 * 109.47248 * 65.83525 * 1 2 3 28 28 H 1.09005 * 109.47261 * 185.82612 * 1 2 3 29 29 H 1.08993 * 109.47768 * 305.82966 * 1 2 3 30 30 H 1.08998 * 109.47621 * 239.99385 * 2 1 3 31 31 H 1.09004 * 109.47016 * 119.98973 * 2 1 3 32 32 H 1.09001 * 109.47036 * 185.62758 * 4 3 2 33 33 H 1.08997 * 109.46977 * 65.62578 * 4 3 2 34 34 H 0.96702 * 113.99953 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.45829 * 301.35427 * 6 3 2 36 36 H 1.08991 * 109.45913 * 61.32005 * 6 3 2 37 37 H 1.09001 * 109.49664 * 178.68575 * 7 6 3 38 38 H 1.09005 * 109.52905 * 58.60375 * 7 6 3 39 39 H 1.08997 * 109.58712 * 294.85212 * 8 7 6 40 40 H 1.09002 * 109.58722 * 174.42264 * 8 7 6 41 41 H 1.08002 * 119.94692 * 359.97438 * 13 12 10 42 42 H 1.07998 * 120.05644 * 180.29584 * 14 13 12 43 43 H 0.96997 * 120.00230 * 180.02562 * 19 18 16 44 44 H 1.08002 * 120.05843 * 180.02562 * 24 15 14 45 45 H 1.07997 * 119.94872 * 179.97438 * 25 24 15 46 46 H 1.09003 * 109.58639 * 293.82512 * 26 9 8 47 47 H 1.09000 * 109.58628 * 173.39781 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4555 2.1908 -1.1999 5 8 1.7487 1.4709 -2.3990 6 6 1.6098 2.1371 1.2941 7 6 2.0912 3.5897 1.2796 8 6 3.6209 3.6158 1.2023 9 7 4.0492 2.8267 0.0392 10 6 4.8664 3.3608 -0.8898 11 8 5.1347 2.7337 -1.8963 12 6 5.4361 4.7075 -0.6853 13 6 5.6679 5.5416 -1.7857 14 6 6.1883 6.7879 -1.6014 15 6 6.5044 7.2317 -0.3021 16 6 7.0497 8.5184 -0.1067 17 1 7.6535 8.7224 0.7650 18 6 6.8074 9.5324 -1.0447 19 7 5.8602 9.3880 -1.9327 20 14 7.8391 11.0895 -1.0243 21 1 9.0266 10.9079 -1.8972 22 1 7.0270 12.2280 -1.5238 23 1 8.2839 11.3703 0.3645 24 6 6.2747 6.3867 0.8015 25 6 5.7485 5.1441 0.6078 26 6 3.5691 1.4442 -0.0919 27 1 -0.3634 0.4207 -0.9377 28 1 -0.3634 -1.0224 0.1043 29 1 -0.3634 0.6015 0.8331 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.8956 3.1863 -1.2568 33 1 0.3752 2.2772 -1.0830 34 1 1.4071 1.8881 -3.2017 35 1 0.5229 2.1155 1.3738 36 1 2.0468 1.6183 2.1472 37 1 1.7644 4.0904 2.1910 38 1 1.6744 4.1031 0.4130 39 1 4.0401 3.1842 2.1112 40 1 3.9637 4.6447 1.0920 41 1 5.4301 5.1986 -2.7818 42 1 6.3623 7.4324 -2.4503 43 1 5.6928 10.0891 -2.5818 44 1 6.5150 6.7226 1.7994 45 1 5.5724 4.4954 1.4531 46 1 3.9841 0.8356 0.7115 47 1 3.8777 1.0402 -1.0560 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275161577.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:26 Heat of formation + Delta-G solvation = -88.854742 kcal Electronic energy + Delta-G solvation = -27505.992110 eV Core-core repulsion = 23845.219359 eV Total energy + Delta-G solvation = -3660.772751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.66932 -39.86379 -38.70152 -37.15208 -35.81623 -35.29245 -32.88917 -32.12686 -31.62148 -30.38694 -28.02943 -26.90518 -26.43223 -24.64111 -23.60164 -22.73234 -22.58407 -20.40770 -19.50839 -19.23944 -18.40269 -17.96100 -17.17821 -17.07831 -16.76370 -15.96943 -15.70528 -15.61326 -15.35092 -15.19986 -14.92733 -14.57245 -14.39302 -14.10856 -13.98143 -13.77164 -13.69445 -13.49917 -13.37179 -13.15730 -12.86268 -12.83246 -12.62571 -12.41906 -12.20777 -12.19533 -11.87789 -11.75574 -11.60140 -11.33046 -11.20866 -11.15213 -11.11282 -10.80877 -10.56569 -9.62156 -9.48203 -9.28044 -8.74113 -6.46963 0.51283 1.12798 1.38516 1.43979 1.52984 2.03485 2.15785 2.21680 2.74706 3.32930 3.60701 3.66413 3.80852 3.89209 4.06974 4.11223 4.22512 4.31665 4.35378 4.38027 4.45410 4.52859 4.55761 4.68563 4.71674 4.75729 4.79959 4.95487 4.97125 4.99355 5.02745 5.05066 5.14948 5.17115 5.21754 5.24616 5.27852 5.36358 5.44593 5.56771 5.59422 5.71897 5.79179 6.00907 6.02084 6.21044 6.55998 6.59259 6.79536 6.82151 6.90748 7.40047 8.19620 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026322 B = 0.003081 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.499409 B = 9086.319576 C = 9294.169257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.064 4.064 4 C 0.089 3.911 5 O -0.583 6.583 6 C -0.103 4.103 7 C -0.136 4.136 8 C 0.085 3.915 9 N -0.605 5.605 10 C 0.570 3.430 11 O -0.604 6.604 12 C -0.284 4.284 13 C -0.056 4.056 14 C -0.198 4.198 15 C 0.100 3.900 16 C -0.474 4.474 17 H 0.090 0.910 18 C 0.033 3.967 19 N -0.808 5.808 20 Si 0.988 3.012 21 H -0.264 1.264 22 H -0.267 1.267 23 H -0.251 1.251 24 C -0.242 4.242 25 C -0.044 4.044 26 C 0.122 3.878 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.019 0.981 33 H 0.063 0.937 34 H 0.386 0.614 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.293 0.707 44 H 0.117 0.883 45 H 0.137 0.863 46 H 0.078 0.922 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.211 -9.717 8.201 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.139 4.139 3 C -0.065 4.065 4 C 0.011 3.989 5 O -0.390 6.390 6 C -0.140 4.140 7 C -0.174 4.174 8 C -0.037 4.037 9 N -0.336 5.336 10 C 0.364 3.636 11 O -0.487 6.487 12 C -0.288 4.288 13 C -0.075 4.075 14 C -0.217 4.217 15 C 0.097 3.903 16 C -0.502 4.502 17 H 0.108 0.892 18 C -0.185 4.185 19 N -0.432 5.432 20 Si 0.808 3.192 21 H -0.189 1.189 22 H -0.192 1.192 23 H -0.175 1.175 24 C -0.262 4.262 25 C -0.062 4.062 26 C 0.000 4.000 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.037 0.963 33 H 0.081 0.919 34 H 0.234 0.766 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.124 0.876 43 H 0.104 0.896 44 H 0.135 0.865 45 H 0.155 0.845 46 H 0.096 0.904 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.932 -10.334 7.938 17.008 hybrid contribution 0.284 1.221 -1.225 1.752 sum -10.648 -9.113 6.713 15.540 Atomic orbital electron populations 1.21802 0.94508 1.02233 1.01875 1.21355 0.96986 0.93634 1.01972 1.20960 0.93582 0.97189 0.94776 1.22233 0.98433 0.93267 0.84943 1.86431 1.82258 1.52966 1.17314 1.21640 1.02277 0.94443 0.95648 1.22007 0.94279 0.97922 1.03185 1.22495 0.96061 0.97528 0.87594 1.47915 1.47453 1.14048 1.24232 1.18610 0.77622 0.85818 0.81585 1.90626 1.63606 1.64113 1.30398 1.19133 1.18978 0.95738 0.94963 1.20462 0.96894 0.93829 0.96324 1.20978 1.07655 0.95211 0.97897 1.18119 0.87564 0.93139 0.91516 1.20114 1.27742 0.94748 1.07559 0.89185 1.26974 0.94605 1.04003 0.92894 1.69785 1.24334 1.35274 1.13830 0.85098 0.78324 0.75471 0.80288 1.18896 1.19153 1.17479 1.20955 1.10786 0.96605 0.97826 1.20858 0.95254 0.95382 0.94728 1.21618 0.94180 0.82104 1.02101 0.93480 0.91978 0.91263 0.93059 0.90577 0.96302 0.91889 0.76557 0.89331 0.89414 0.88072 0.93128 0.89291 0.88913 0.89808 0.87578 0.89575 0.86506 0.84519 0.90409 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.14 71.98 0.66 -1.56 16 2 C -0.10 -1.92 4.73 30.59 0.14 -1.77 16 3 C -0.06 -1.44 0.38 -52.10 -0.02 -1.46 16 4 C 0.09 2.27 4.68 71.99 0.34 2.61 16 5 O -0.58 -16.48 12.32 -148.98 -1.83 -18.31 16 6 C -0.10 -1.74 4.49 30.62 0.14 -1.60 16 7 C -0.14 -2.81 5.74 30.67 0.18 -2.63 16 8 C 0.08 2.24 4.73 86.36 0.41 2.65 16 9 N -0.61 -20.36 2.32 -822.52 -1.91 -22.27 16 10 C 0.57 25.29 7.40 86.73 0.64 25.93 16 11 O -0.60 -31.15 16.18 -3.99 -0.06 -31.21 16 12 C -0.28 -13.26 5.38 -19.93 -0.11 -13.37 16 13 C -0.06 -2.88 9.53 22.25 0.21 -2.66 16 14 C -0.20 -10.63 8.63 22.47 0.19 -10.44 16 15 C 0.10 5.18 5.58 -21.28 -0.12 5.06 16 16 C -0.47 -23.89 9.06 23.46 0.21 -23.68 16 17 H 0.09 4.26 7.89 -2.91 -0.02 4.23 16 18 C 0.03 1.56 5.20 85.36 0.44 2.01 16 19 N -0.81 -40.44 10.80 21.87 0.24 -40.21 16 20 Si 0.99 35.68 29.59 68.60 2.03 37.71 16 21 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 22 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 23 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 24 C -0.24 -11.02 9.73 22.47 0.22 -10.80 16 25 C -0.04 -1.83 7.28 22.25 0.16 -1.67 16 26 C 0.12 3.60 5.08 86.36 0.44 4.04 16 27 H 0.05 0.80 6.84 -2.38 -0.02 0.78 16 28 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.07 0.85 6.24 -2.39 -0.01 0.84 16 30 H 0.05 1.19 7.67 -2.39 -0.02 1.18 16 31 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.02 0.59 6.15 -2.39 -0.01 0.58 16 33 H 0.06 1.31 6.84 -2.39 -0.02 1.29 16 34 H 0.39 8.31 9.12 -74.06 -0.68 7.63 16 35 H 0.09 1.18 6.35 -2.39 -0.02 1.17 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.24 6.47 -2.38 -0.02 1.23 16 39 H 0.09 1.88 8.03 -2.39 -0.02 1.87 16 40 H 0.09 2.91 4.30 -2.39 -0.01 2.90 16 41 H 0.08 4.37 7.96 -2.91 -0.02 4.34 16 42 H 0.11 5.94 6.07 -2.91 -0.02 5.93 16 43 H 0.29 13.20 8.29 -92.71 -0.77 12.43 16 44 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 45 H 0.14 4.61 5.78 -2.91 -0.02 4.59 16 46 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.06 2.30 6.57 -2.39 -0.02 2.29 16 Total: -1.00 -67.06 358.60 2.92 -64.14 By element: Atomic # 1 Polarization: 39.18 SS G_CDS: 0.32 Total: 39.50 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: 4.14 Total: -29.35 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -1.67 Total: -62.48 kcal Atomic # 8 Polarization: -47.63 SS G_CDS: -1.90 Total: -49.53 kcal Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.71 kcal Total: -67.06 2.92 -64.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275161577.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.711 kcal (2) G-P(sol) polarization free energy of solvation -67.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds