Wall clock time and date at job start Tue Mar 31 2020 12:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46718 * 2 1 4 4 C 1.53003 * 109.47136 * 176.54891 * 3 2 1 5 5 C 1.53001 * 109.87474 * 182.57473 * 4 3 2 6 6 O 1.42893 * 109.46977 * 301.90258 * 5 4 3 7 7 C 1.54331 * 109.88011 * 303.74818 * 4 3 2 8 8 C 1.55157 * 102.93834 * 97.22586 * 7 4 3 9 9 C 1.54906 * 101.58590 * 35.50265 * 8 7 4 10 10 N 1.47015 * 109.88281 * 61.55475 * 4 3 2 11 11 C 1.34777 * 125.64881 * 59.56431 * 10 4 3 12 12 O 1.21552 * 119.99943 * 354.55870 * 11 10 4 13 13 C 1.47890 * 120.00383 * 174.56009 * 11 10 4 14 14 C 1.39917 * 120.02196 * 349.56191 * 13 11 10 15 15 C 1.38326 * 120.35560 * 179.71698 * 14 13 11 16 16 C 1.37755 * 120.41416 * 0.55428 * 15 14 13 17 17 C 1.40750 * 120.03476 * 359.72120 * 16 15 14 18 18 C 1.41439 * 120.17629 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00243 * 145.01334 * 18 17 16 20 20 C 1.39940 * 119.99939 * 325.01507 * 18 17 16 21 21 N 1.30825 * 120.00205 * 172.19006 * 20 18 17 22 22 Si 1.86805 * 119.99793 * 352.18069 * 20 18 17 23 23 H 1.48504 * 109.46756 * 88.55414 * 22 20 18 24 24 H 1.48494 * 109.47074 * 208.55352 * 22 20 18 25 25 H 1.48497 * 109.47358 * 328.55919 * 22 20 18 26 26 C 1.38986 * 120.02484 * 169.82671 * 13 11 10 27 27 H 1.09000 * 109.47280 * 59.99982 * 1 2 3 28 28 H 1.09006 * 109.46676 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47354 * 299.99828 * 1 2 3 30 30 H 1.09003 * 109.47049 * 119.99282 * 2 1 3 31 31 H 1.09000 * 109.47354 * 240.00172 * 2 1 3 32 32 H 1.08999 * 109.47383 * 296.54947 * 3 2 1 33 33 H 1.08999 * 109.47374 * 56.54593 * 3 2 1 34 34 H 1.09000 * 109.47324 * 61.90207 * 5 4 3 35 35 H 1.08999 * 109.47252 * 181.89840 * 5 4 3 36 36 H 0.96706 * 114.00196 * 180.02562 * 6 5 4 37 37 H 1.09000 * 110.71635 * 215.58502 * 7 4 3 38 38 H 1.08996 * 110.71968 * 338.85850 * 7 4 3 39 39 H 1.09000 * 111.00191 * 277.42488 * 8 7 4 40 40 H 1.09004 * 111.00369 * 153.58008 * 8 7 4 41 41 H 1.09000 * 110.36569 * 204.15497 * 9 8 7 42 42 H 1.08996 * 110.36972 * 81.82850 * 9 8 7 43 43 H 1.08005 * 119.82228 * 359.96615 * 14 13 11 44 44 H 1.07999 * 119.79225 * 180.25334 * 15 14 13 45 45 H 1.08001 * 119.98254 * 179.74502 * 16 15 14 46 46 H 0.96995 * 120.00228 * 179.97438 * 21 20 18 47 47 H 1.08003 * 120.20742 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5675 1.4435 0.0868 5 6 4.0838 2.8823 0.1520 6 8 3.6404 3.6002 -1.0012 7 6 4.0225 0.6620 1.3374 8 6 4.3533 -0.7429 0.7678 9 6 4.9379 -0.3855 -0.6215 10 7 4.1353 0.7611 -1.0850 11 6 3.9531 1.1240 -2.3701 12 8 3.1906 2.0302 -2.6435 13 6 4.6810 0.4197 -3.4478 14 6 5.7149 -0.4679 -3.1301 15 6 6.3964 -1.1347 -4.1322 16 6 6.0730 -0.9244 -5.4547 17 6 5.0397 -0.0309 -5.7937 18 6 4.7048 0.1870 -7.1505 19 1 3.6770 0.3627 -7.4316 20 6 5.7054 0.1747 -8.1288 21 7 5.3823 0.2229 -9.3956 22 14 7.5024 0.0898 -7.6258 23 1 7.9139 -1.3313 -7.4974 24 1 8.3373 0.7556 -8.6578 25 1 7.6847 0.7775 -6.3223 26 6 4.3422 0.6432 -4.7771 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5137 0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.7279 1.9382 -0.9193 33 1 1.6269 1.9739 0.8574 34 1 3.7003 3.3656 1.0506 35 1 5.1734 2.8764 0.1797 36 1 3.9319 4.5219 -1.0269 37 1 4.9096 1.1189 1.7760 38 1 3.2167 0.6017 2.0688 39 1 3.4512 -1.3465 0.6685 40 1 5.0949 -1.2500 1.3850 41 1 4.8290 -1.2263 -1.3066 42 1 5.9865 -0.1025 -0.5305 43 1 5.9797 -0.6363 -2.0966 44 1 7.1902 -1.8209 -3.8765 45 1 6.6124 -1.4456 -6.2317 46 1 6.0758 0.2148 -10.0737 47 1 3.5474 1.3304 -5.0271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278074659.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:51 Heat of formation + Delta-G solvation = -68.015987 kcal Electronic energy + Delta-G solvation = -27975.781079 eV Core-core repulsion = 24315.911965 eV Total energy + Delta-G solvation = -3659.869115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.79661 -39.71953 -38.34082 -37.18401 -35.70354 -35.13592 -33.11169 -32.03081 -31.72661 -31.29784 -27.29919 -27.20254 -26.33213 -24.85226 -23.10303 -22.62660 -22.29117 -21.62681 -19.87978 -18.96136 -18.11527 -17.67632 -17.49603 -17.33285 -16.48082 -16.32850 -16.01411 -15.53951 -15.25351 -14.94920 -14.87431 -14.57402 -14.50061 -14.28989 -14.12970 -13.85721 -13.70543 -13.35314 -13.24405 -13.14379 -12.87601 -12.62595 -12.54952 -12.45488 -12.29665 -12.13447 -11.98675 -11.69342 -11.66410 -11.43704 -11.25397 -11.18484 -11.06562 -10.75229 -10.42046 -9.66909 -9.53103 -9.36498 -8.85840 -6.58386 0.25464 0.73931 1.22675 1.38522 1.46187 2.07040 2.10773 2.16062 2.70632 3.33524 3.42634 3.54681 3.78492 3.92745 3.98644 4.12595 4.18677 4.25700 4.28276 4.41372 4.42092 4.46501 4.51712 4.57822 4.63409 4.65955 4.76475 4.85214 4.88800 4.90076 4.91787 4.97847 5.07048 5.10541 5.18435 5.20531 5.27590 5.37224 5.40471 5.42767 5.50235 5.64790 5.70854 5.80390 5.83843 6.13816 6.30253 6.63541 6.72338 6.74809 6.98671 7.47578 8.24011 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019095 B = 0.003855 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.972693 B = 7261.387868 C = 7481.720689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.118 4.118 4 C 0.158 3.842 5 C 0.064 3.936 6 O -0.566 6.566 7 C -0.112 4.112 8 C -0.129 4.129 9 C 0.075 3.925 10 N -0.601 5.601 11 C 0.566 3.434 12 O -0.543 6.543 13 C -0.111 4.111 14 C -0.204 4.204 15 C -0.087 4.087 16 C -0.222 4.222 17 C 0.065 3.935 18 C -0.493 4.493 19 H 0.044 0.956 20 C 0.040 3.960 21 N -0.866 5.866 22 Si 0.973 3.027 23 H -0.243 1.243 24 H -0.280 1.280 25 H -0.253 1.253 26 C -0.166 4.166 27 H 0.028 0.972 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.031 0.969 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.375 0.625 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.175 0.825 44 H 0.150 0.850 45 H 0.109 0.891 46 H 0.293 0.707 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.807 -2.467 27.259 27.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.156 4.156 4 C 0.074 3.926 5 C -0.014 4.014 6 O -0.371 6.371 7 C -0.149 4.149 8 C -0.166 4.166 9 C -0.047 4.047 10 N -0.335 5.335 11 C 0.356 3.644 12 O -0.421 6.421 13 C -0.114 4.114 14 C -0.222 4.222 15 C -0.105 4.105 16 C -0.242 4.242 17 C 0.063 3.937 18 C -0.523 4.523 19 H 0.062 0.938 20 C -0.172 4.172 21 N -0.494 5.494 22 Si 0.796 3.204 23 H -0.168 1.168 24 H -0.207 1.207 25 H -0.177 1.177 26 C -0.187 4.187 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.221 0.779 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.100 0.900 40 H 0.135 0.865 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.192 0.808 44 H 0.167 0.833 45 H 0.126 0.874 46 H 0.103 0.897 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.106 -2.517 26.601 26.803 hybrid contribution 0.194 1.073 -1.298 1.695 sum 2.300 -1.444 25.303 25.449 Atomic orbital electron populations 1.21768 0.95931 1.01811 1.01277 1.21597 0.95742 0.96290 1.01732 1.21811 0.94302 0.97490 1.02012 1.21394 0.93638 0.91277 0.86298 1.22735 0.97596 0.92260 0.88837 1.87013 1.78172 1.27636 1.44320 1.22699 1.03407 0.94795 0.94036 1.23029 1.02762 0.96763 0.94069 1.23079 0.95637 0.88765 0.97191 1.48271 1.50810 1.30756 1.03711 1.18167 0.81465 0.82583 0.82159 1.90725 1.37603 1.31125 1.82598 1.19867 0.99219 1.00025 0.92334 1.22227 0.98177 1.00108 1.01687 1.21135 0.98984 0.98823 0.91552 1.21490 1.03053 1.02192 0.97426 1.17785 0.92447 0.90738 0.92777 1.19421 0.95697 1.45973 0.91245 0.93761 1.26873 1.05903 0.90512 0.93909 1.69674 1.38294 1.39292 1.02096 0.85429 0.75840 0.80352 0.78779 1.16819 1.20686 1.17741 1.21199 1.03397 1.01673 0.92388 0.95306 0.91989 0.91228 0.88818 0.95029 0.94086 0.90148 0.90888 0.93625 0.77852 0.88506 0.87664 0.90043 0.86542 0.89515 0.89429 0.80802 0.83257 0.87378 0.89680 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.91 71.98 0.71 -2.47 16 2 C -0.12 -2.58 4.52 30.59 0.14 -2.45 16 3 C -0.12 -2.97 3.88 30.60 0.12 -2.85 16 4 C 0.16 3.54 0.62 3.96 0.00 3.54 16 5 C 0.06 1.44 5.99 71.98 0.43 1.87 16 6 O -0.57 -17.72 9.66 -126.07 -1.22 -18.94 16 7 C -0.11 -1.31 5.46 31.79 0.17 -1.14 16 8 C -0.13 -1.47 6.48 31.99 0.21 -1.27 16 9 C 0.07 1.45 4.90 86.85 0.43 1.88 16 10 N -0.60 -17.21 2.22 -768.55 -1.70 -18.91 16 11 C 0.57 23.20 7.19 86.80 0.62 23.82 16 12 O -0.54 -26.29 12.22 19.03 0.23 -26.06 16 13 C -0.11 -4.92 5.84 -20.14 -0.12 -5.04 16 14 C -0.20 -7.28 8.28 22.70 0.19 -7.09 16 15 C -0.09 -3.24 10.01 22.18 0.22 -3.02 16 16 C -0.22 -10.31 6.98 22.77 0.16 -10.15 16 17 C 0.06 3.52 5.08 -21.32 -0.11 3.41 16 18 C -0.49 -29.85 9.61 23.47 0.23 -29.63 16 19 H 0.04 2.95 8.06 -2.91 -0.02 2.93 16 20 C 0.04 2.25 5.49 85.26 0.47 2.72 16 21 N -0.87 -50.31 13.93 21.83 0.30 -50.01 16 22 Si 0.97 43.78 24.42 68.60 1.67 45.45 16 23 H -0.24 -9.84 6.58 99.48 0.65 -9.19 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 25 H -0.25 -11.60 6.73 99.48 0.67 -10.93 16 26 C -0.17 -8.83 9.33 23.01 0.21 -8.61 16 27 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.46 5.17 -2.39 -0.01 1.44 16 31 H 0.03 0.89 7.77 -2.39 -0.02 0.87 16 32 H 0.04 1.48 6.13 -2.39 -0.01 1.47 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.37 8.68 9.12 -74.05 -0.68 8.00 16 37 H 0.10 0.80 7.86 -2.39 -0.02 0.78 16 38 H 0.10 0.86 7.25 -2.39 -0.02 0.84 16 39 H 0.08 1.00 5.91 -2.39 -0.01 0.98 16 40 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.09 1.86 6.00 -2.39 -0.01 1.84 16 42 H 0.09 1.43 7.31 -2.39 -0.02 1.41 16 43 H 0.18 4.53 3.36 -2.91 -0.01 4.52 16 44 H 0.15 4.13 8.06 -2.91 -0.02 4.10 16 45 H 0.11 4.89 4.50 -2.91 -0.01 4.88 16 46 H 0.29 15.22 8.30 -92.71 -0.77 14.45 16 47 H 0.08 4.70 7.67 -2.91 -0.02 4.68 16 Total: -1.00 -79.27 351.89 3.61 -75.66 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.23 Total: 29.27 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 4.09 Total: -36.47 kcal Atomic # 7 Polarization: -67.52 SS G_CDS: -1.40 Total: -68.92 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -0.99 Total: -45.00 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.67 Total: 45.45 kcal Total: -79.27 3.61 -75.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278074659.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.644 kcal (2) G-P(sol) polarization free energy of solvation -79.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds