Wall clock time and date at job start Tue Mar 31 2020 12:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47350 * 2 1 4 4 C 1.53000 * 109.47071 * 174.69043 * 3 2 1 5 5 C 1.53009 * 109.86984 * 179.25853 * 4 3 2 6 6 O 1.42898 * 109.47038 * 57.58629 * 5 4 3 7 7 C 1.54319 * 109.88412 * 58.08239 * 4 3 2 8 8 C 1.55162 * 102.93957 * 262.77345 * 7 4 3 9 9 C 1.55128 * 101.48616 * 324.33028 * 8 7 4 10 10 N 1.47023 * 109.88185 * 300.26776 * 4 3 2 11 11 C 1.34774 * 125.65266 * 300.44579 * 10 4 3 12 12 O 1.21543 * 119.99964 * 355.39140 * 11 10 4 13 13 C 1.47887 * 120.00142 * 175.39159 * 11 10 4 14 14 C 1.39925 * 120.02280 * 24.59475 * 13 11 10 15 15 C 1.38330 * 120.35580 * 179.74285 * 14 13 11 16 16 C 1.37751 * 120.41148 * 0.02562 * 15 14 13 17 17 C 1.40746 * 120.04392 * 359.97438 * 16 15 14 18 18 C 1.41433 * 120.18345 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99826 * 27.18591 * 18 17 16 20 20 C 1.39931 * 120.00372 * 207.19152 * 18 17 16 21 21 N 1.30827 * 120.00098 * 12.91466 * 20 18 17 22 22 Si 1.86807 * 120.00207 * 192.91410 * 20 18 17 23 23 H 1.48500 * 109.46999 * 89.99621 * 22 20 18 24 24 H 1.48493 * 109.46935 * 209.99671 * 22 20 18 25 25 H 1.48499 * 109.46583 * 329.99916 * 22 20 18 26 26 C 1.38990 * 120.02740 * 204.32102 * 13 11 10 27 27 H 1.08995 * 109.47011 * 59.99936 * 1 2 3 28 28 H 1.09001 * 109.46849 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46719 * 299.99857 * 1 2 3 30 30 H 1.09003 * 109.47503 * 239.99660 * 2 1 3 31 31 H 1.09004 * 109.47296 * 119.99563 * 2 1 3 32 32 H 1.09000 * 109.46618 * 54.68755 * 3 2 1 33 33 H 1.08993 * 109.46535 * 294.69073 * 3 2 1 34 34 H 1.09004 * 109.46534 * 177.58797 * 5 4 3 35 35 H 1.08998 * 109.46781 * 297.58935 * 5 4 3 36 36 H 0.96701 * 113.99505 * 179.97438 * 6 5 4 37 37 H 1.08997 * 110.71934 * 21.13737 * 7 4 3 38 38 H 1.08994 * 110.71770 * 144.41138 * 7 4 3 39 39 H 1.08994 * 111.00154 * 82.57703 * 8 7 4 40 40 H 1.09008 * 110.99863 * 206.38468 * 8 7 4 41 41 H 1.09000 * 110.50090 * 278.45829 * 9 8 7 42 42 H 1.08996 * 110.34073 * 156.05972 * 9 8 7 43 43 H 1.08003 * 119.82211 * 359.73267 * 14 13 11 44 44 H 1.08001 * 119.79011 * 179.97438 * 15 14 13 45 45 H 1.08000 * 119.97891 * 179.97438 * 16 15 14 46 46 H 0.96995 * 120.00244 * 180.02562 * 21 20 18 47 47 H 1.08007 * 120.19789 * 0.27738 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5642 1.4445 0.1335 5 6 4.0859 2.8828 0.1159 6 8 3.4732 3.6247 1.1724 7 6 4.1935 0.6403 -1.0236 8 6 4.4377 -0.7529 -0.3858 9 6 4.8214 -0.3650 1.0664 10 7 3.9572 0.7855 1.3876 11 6 3.5925 1.1723 2.6261 12 8 2.9478 2.1911 2.7793 13 6 3.9769 0.3571 3.7986 14 6 5.0958 -0.4805 3.7324 15 6 5.4647 -1.2420 4.8268 16 6 4.7350 -1.1851 5.9938 17 6 3.6065 -0.3484 6.0791 18 6 2.8548 -0.2881 7.2757 19 1 3.3298 -0.4972 8.2228 20 6 1.4958 0.0425 7.2324 21 7 0.8601 0.0482 6.0890 22 14 0.5892 0.4756 8.8072 23 1 0.6826 1.9383 9.0458 24 1 -0.8378 0.0848 8.6803 25 1 1.2023 -0.2521 9.9473 26 6 3.2305 0.4267 4.9689 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6011 1.9830 0.8386 33 1 1.7564 1.9281 -0.9337 34 1 5.1671 2.8787 0.2543 35 1 3.8437 3.3454 -0.8408 36 1 3.7583 4.5474 1.2217 37 1 3.5011 0.5647 -1.8619 38 1 5.1348 1.0905 -1.3388 39 1 3.5301 -1.3562 -0.4059 40 1 5.2594 -1.2706 -0.8808 41 1 5.8713 -0.0773 1.1198 42 1 4.6189 -1.1929 1.7458 43 1 5.6744 -0.5330 2.8220 44 1 6.3297 -1.8858 4.7655 45 1 5.0290 -1.7829 6.8438 46 1 -0.0819 0.2776 6.0589 47 1 2.3660 1.0719 5.0244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278074670.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:00 Heat of formation + Delta-G solvation = -57.093509 kcal Electronic energy + Delta-G solvation = -28281.005094 eV Core-core repulsion = 24621.609614 eV Total energy + Delta-G solvation = -3659.395480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.37909 -37.81281 -36.44276 -35.92117 -34.13206 -33.54181 -31.46641 -30.61182 -29.54855 -29.30998 -26.10386 -25.47889 -24.93685 -23.11611 -21.76092 -21.25564 -20.75993 -19.90811 -18.09551 -17.25687 -16.84311 -16.30643 -15.63044 -15.26760 -15.09924 -14.76752 -14.49891 -14.08283 -13.62086 -13.53466 -13.37125 -12.97448 -12.89644 -12.83141 -12.52016 -12.29184 -12.05058 -11.98696 -11.62492 -11.47938 -11.40460 -11.20127 -11.11463 -11.08182 -10.98700 -10.49900 -10.47707 -10.33119 -10.23652 -10.18798 -9.86441 -9.60696 -9.50159 -9.17809 -8.62121 -8.00090 -7.51247 -7.39375 -6.70008 -4.36154 2.40281 2.88269 3.11487 3.14366 3.20431 3.55399 3.96803 4.01007 4.36168 4.58304 4.69435 4.85451 4.99212 5.12402 5.23045 5.30975 5.43244 5.50937 5.54685 5.58856 5.66150 5.68644 5.72877 5.76226 5.83928 5.94830 6.03542 6.06772 6.10515 6.18496 6.24562 6.27322 6.39207 6.42882 6.56132 6.68036 6.78139 7.02201 7.06753 7.15373 7.30161 7.47667 7.77253 7.90132 8.01203 8.03690 8.23827 8.30666 8.59263 8.88670 8.91533 9.23201 10.24246 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014471 B = 0.004563 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.391172 B = 6134.847727 C = 6783.720403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.118 4.118 4 C 0.171 3.829 5 C 0.071 3.929 6 O -0.522 6.522 7 C -0.121 4.121 8 C -0.140 4.140 9 C 0.096 3.904 10 N -0.610 5.610 11 C 0.574 3.426 12 O -0.499 6.499 13 C -0.121 4.121 14 C -0.231 4.231 15 C -0.103 4.103 16 C -0.211 4.211 17 C 0.099 3.901 18 C -0.462 4.462 19 H 0.079 0.921 20 C 0.073 3.927 21 N -0.793 5.793 22 Si 0.911 3.089 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.092 4.092 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.037 0.963 35 H 0.040 0.960 36 H 0.357 0.643 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.282 0.718 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.267 0.620 -14.714 15.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.157 4.157 4 C 0.085 3.915 5 C -0.009 4.009 6 O -0.324 6.324 7 C -0.159 4.159 8 C -0.178 4.178 9 C -0.027 4.027 10 N -0.346 5.346 11 C 0.365 3.635 12 O -0.373 6.373 13 C -0.124 4.124 14 C -0.250 4.250 15 C -0.122 4.122 16 C -0.231 4.231 17 C 0.097 3.903 18 C -0.492 4.492 19 H 0.097 0.903 20 C -0.145 4.145 21 N -0.419 5.419 22 Si 0.736 3.264 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.112 4.112 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.202 0.798 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.126 0.874 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.093 0.907 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.324 0.670 -14.503 14.894 hybrid contribution -0.021 0.603 0.456 0.756 sum 3.303 1.272 -14.047 14.486 Atomic orbital electron populations 1.21747 0.96270 1.01170 1.01521 1.21598 0.95483 0.97012 1.01786 1.21837 0.93942 0.97264 1.02625 1.20915 0.95169 0.90642 0.84750 1.22492 0.95732 0.92391 0.90253 1.87158 1.68525 1.25039 1.51664 1.22624 1.00858 0.95747 0.96709 1.23033 1.02463 0.96547 0.95723 1.22722 0.93918 0.90432 0.95677 1.48385 1.51461 1.30194 1.04594 1.18494 0.78917 0.84771 0.81290 1.90756 1.38321 1.23892 1.84332 1.19535 0.98736 1.00161 0.94008 1.21038 1.00649 1.04224 0.99112 1.20459 0.98497 0.99239 0.93969 1.21126 1.01124 1.03478 0.97337 1.17593 0.90905 0.88864 0.92976 1.19560 0.93682 1.41777 0.94162 0.90318 1.25910 0.98131 0.92724 0.97701 1.69766 1.10981 1.34588 1.26523 0.86265 0.78443 0.79813 0.81917 1.19250 1.20297 1.18685 1.21598 0.99685 0.98767 0.91146 0.93414 0.93127 0.92519 0.92544 0.91403 0.89348 0.92401 0.94438 0.94151 0.79804 0.90099 0.90920 0.90031 0.90381 0.92004 0.88724 0.87429 0.89122 0.88827 0.90723 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.12 -1.74 4.34 -26.73 -0.12 -1.86 16 3 C -0.12 -1.80 3.87 -26.73 -0.10 -1.90 16 4 C 0.17 2.46 0.62 -130.84 -0.08 2.38 16 5 C 0.07 0.99 5.99 37.16 0.22 1.21 16 6 O -0.52 -8.88 9.29 -59.88 -0.56 -9.44 16 7 C -0.12 -1.27 5.48 -24.90 -0.14 -1.41 16 8 C -0.14 -1.49 6.49 -24.46 -0.16 -1.65 16 9 C 0.10 1.36 5.02 -2.41 -0.01 1.34 16 10 N -0.61 -10.61 1.98 -156.75 -0.31 -10.92 16 11 C 0.57 12.91 7.19 -12.31 -0.09 12.82 16 12 O -0.50 -12.54 12.30 -19.32 -0.24 -12.78 16 13 C -0.12 -2.93 5.75 -105.04 -0.60 -3.54 16 14 C -0.23 -4.95 7.99 -38.92 -0.31 -5.27 16 15 C -0.10 -2.24 10.01 -39.73 -0.40 -2.64 16 16 C -0.21 -5.11 9.78 -38.81 -0.38 -5.49 16 17 C 0.10 2.67 5.56 -106.87 -0.59 2.08 16 18 C -0.46 -12.43 9.06 -37.73 -0.34 -12.77 16 19 H 0.08 2.02 7.88 -52.49 -0.41 1.60 16 20 C 0.07 1.88 5.22 -17.35 -0.09 1.79 16 21 N -0.79 -21.33 10.85 55.55 0.60 -20.73 16 22 Si 0.91 19.30 29.58 -169.99 -5.03 14.27 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 26 C -0.09 -2.50 8.21 -38.44 -0.32 -2.82 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.67 5.93 -51.93 -0.31 0.37 16 31 H 0.07 1.17 7.31 -51.93 -0.38 0.79 16 32 H 0.09 1.72 6.43 -51.93 -0.33 1.39 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.36 4.53 9.12 45.56 0.42 4.94 16 37 H 0.08 0.73 7.33 -51.93 -0.38 0.35 16 38 H 0.07 0.66 7.86 -51.93 -0.41 0.25 16 39 H 0.08 0.90 5.97 -51.93 -0.31 0.59 16 40 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 41 H 0.06 0.82 7.42 -51.93 -0.39 0.43 16 42 H 0.09 1.49 5.88 -51.93 -0.31 1.18 16 43 H 0.11 1.95 4.23 -52.48 -0.22 1.73 16 44 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 46 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 47 H 0.13 3.90 5.95 -52.48 -0.31 3.59 16 LS Contribution 358.51 15.07 5.40 5.40 Total: -1.00 -31.36 358.51 -9.55 -40.91 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -6.28 Total: 12.70 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -3.14 Total: -19.41 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.29 Total: -31.65 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.79 Total: -22.22 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.36 -9.55 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278074670.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.186 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds