Wall clock time and date at job start Tue Mar 31 2020 12:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47350 * 2 1 4 4 C 1.53000 * 109.47071 * 174.69043 * 3 2 1 5 5 C 1.53009 * 109.86984 * 179.25853 * 4 3 2 6 6 O 1.42898 * 109.47038 * 57.58629 * 5 4 3 7 7 C 1.54319 * 109.88412 * 58.08239 * 4 3 2 8 8 C 1.55162 * 102.93957 * 262.77345 * 7 4 3 9 9 C 1.55128 * 101.48616 * 324.33028 * 8 7 4 10 10 N 1.47023 * 109.88185 * 300.26776 * 4 3 2 11 11 C 1.34774 * 125.65266 * 300.44579 * 10 4 3 12 12 O 1.21543 * 119.99964 * 355.39140 * 11 10 4 13 13 C 1.47887 * 120.00142 * 175.39159 * 11 10 4 14 14 C 1.39925 * 120.02280 * 24.59475 * 13 11 10 15 15 C 1.38330 * 120.35580 * 179.74285 * 14 13 11 16 16 C 1.37751 * 120.41148 * 0.02562 * 15 14 13 17 17 C 1.40746 * 120.04392 * 359.97438 * 16 15 14 18 18 C 1.41433 * 120.18345 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99826 * 27.18591 * 18 17 16 20 20 C 1.39931 * 120.00372 * 207.19152 * 18 17 16 21 21 N 1.30827 * 120.00098 * 12.91466 * 20 18 17 22 22 Si 1.86807 * 120.00207 * 192.91410 * 20 18 17 23 23 H 1.48500 * 109.46999 * 89.99621 * 22 20 18 24 24 H 1.48493 * 109.46935 * 209.99671 * 22 20 18 25 25 H 1.48499 * 109.46583 * 329.99916 * 22 20 18 26 26 C 1.38990 * 120.02740 * 204.32102 * 13 11 10 27 27 H 1.08995 * 109.47011 * 59.99936 * 1 2 3 28 28 H 1.09001 * 109.46849 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46719 * 299.99857 * 1 2 3 30 30 H 1.09003 * 109.47503 * 239.99660 * 2 1 3 31 31 H 1.09004 * 109.47296 * 119.99563 * 2 1 3 32 32 H 1.09000 * 109.46618 * 54.68755 * 3 2 1 33 33 H 1.08993 * 109.46535 * 294.69073 * 3 2 1 34 34 H 1.09004 * 109.46534 * 177.58797 * 5 4 3 35 35 H 1.08998 * 109.46781 * 297.58935 * 5 4 3 36 36 H 0.96701 * 113.99505 * 179.97438 * 6 5 4 37 37 H 1.08997 * 110.71934 * 21.13737 * 7 4 3 38 38 H 1.08994 * 110.71770 * 144.41138 * 7 4 3 39 39 H 1.08994 * 111.00154 * 82.57703 * 8 7 4 40 40 H 1.09008 * 110.99863 * 206.38468 * 8 7 4 41 41 H 1.09000 * 110.50090 * 278.45829 * 9 8 7 42 42 H 1.08996 * 110.34073 * 156.05972 * 9 8 7 43 43 H 1.08003 * 119.82211 * 359.73267 * 14 13 11 44 44 H 1.08001 * 119.79011 * 179.97438 * 15 14 13 45 45 H 1.08000 * 119.97891 * 179.97438 * 16 15 14 46 46 H 0.96995 * 120.00244 * 180.02562 * 21 20 18 47 47 H 1.08007 * 120.19789 * 0.27738 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5642 1.4445 0.1335 5 6 4.0859 2.8828 0.1159 6 8 3.4732 3.6247 1.1724 7 6 4.1935 0.6403 -1.0236 8 6 4.4377 -0.7529 -0.3858 9 6 4.8214 -0.3650 1.0664 10 7 3.9572 0.7855 1.3876 11 6 3.5925 1.1723 2.6261 12 8 2.9478 2.1911 2.7793 13 6 3.9769 0.3571 3.7986 14 6 5.0958 -0.4805 3.7324 15 6 5.4647 -1.2420 4.8268 16 6 4.7350 -1.1851 5.9938 17 6 3.6065 -0.3484 6.0791 18 6 2.8548 -0.2881 7.2757 19 1 3.3298 -0.4972 8.2228 20 6 1.4958 0.0425 7.2324 21 7 0.8601 0.0482 6.0890 22 14 0.5892 0.4756 8.8072 23 1 0.6826 1.9383 9.0458 24 1 -0.8378 0.0848 8.6803 25 1 1.2023 -0.2521 9.9473 26 6 3.2305 0.4267 4.9689 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6011 1.9830 0.8386 33 1 1.7564 1.9281 -0.9337 34 1 5.1671 2.8787 0.2543 35 1 3.8437 3.3454 -0.8408 36 1 3.7583 4.5474 1.2217 37 1 3.5011 0.5647 -1.8619 38 1 5.1348 1.0905 -1.3388 39 1 3.5301 -1.3562 -0.4059 40 1 5.2594 -1.2706 -0.8808 41 1 5.8713 -0.0773 1.1198 42 1 4.6189 -1.1929 1.7458 43 1 5.6744 -0.5330 2.8220 44 1 6.3297 -1.8858 4.7655 45 1 5.0290 -1.7829 6.8438 46 1 -0.0819 0.2776 6.0589 47 1 2.3660 1.0719 5.0244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278074670.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:59 Heat of formation + Delta-G solvation = -75.690281 kcal Electronic energy + Delta-G solvation = -28281.811511 eV Core-core repulsion = 24621.609614 eV Total energy + Delta-G solvation = -3660.201897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.69011 -39.49601 -38.16818 -37.12930 -35.69656 -35.10543 -32.88803 -31.78393 -31.29220 -31.09298 -27.31947 -27.22687 -26.20974 -24.63301 -23.11980 -22.60636 -22.28492 -21.38243 -19.74288 -18.83815 -18.07846 -17.48379 -17.31283 -16.98336 -16.52098 -16.38229 -15.95927 -15.31950 -15.14161 -14.91602 -14.74210 -14.56059 -14.30198 -14.23408 -14.03590 -13.65399 -13.36331 -13.25418 -13.14674 -12.94350 -12.82751 -12.67968 -12.60113 -12.45846 -12.23937 -12.12453 -11.82295 -11.77456 -11.63803 -11.42011 -11.28655 -11.21557 -11.08381 -10.71866 -10.33741 -9.50802 -9.37156 -9.24781 -8.62638 -6.39528 0.53287 1.02186 1.33646 1.46353 1.48557 2.16333 2.17684 2.28106 2.81627 3.36455 3.57943 3.69867 3.81428 3.93818 4.04698 4.12561 4.23266 4.27007 4.41649 4.45488 4.47343 4.51366 4.58202 4.64330 4.67982 4.73758 4.87476 4.89868 4.92090 4.97381 5.03834 5.08204 5.10048 5.19044 5.22789 5.26204 5.32694 5.37007 5.39598 5.48589 5.55198 5.80258 5.89064 5.99910 6.07226 6.31297 6.57664 6.79624 6.89371 6.96977 7.03522 7.58367 8.33202 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014471 B = 0.004563 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.391172 B = 6134.847727 C = 6783.720403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.114 4.114 4 C 0.157 3.843 5 C 0.065 3.935 6 O -0.559 6.559 7 C -0.109 4.109 8 C -0.128 4.128 9 C 0.080 3.920 10 N -0.603 5.603 11 C 0.565 3.435 12 O -0.541 6.541 13 C -0.134 4.134 14 C -0.211 4.211 15 C -0.100 4.100 16 C -0.218 4.218 17 C 0.066 3.934 18 C -0.500 4.500 19 H 0.081 0.919 20 C 0.027 3.973 21 N -0.833 5.833 22 Si 0.984 3.016 23 H -0.268 1.268 24 H -0.269 1.269 25 H -0.250 1.250 26 C -0.129 4.129 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.021 0.979 30 H 0.093 0.907 31 H 0.030 0.970 32 H 0.033 0.967 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.370 0.630 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.116 0.884 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.150 0.850 44 H 0.138 0.862 45 H 0.107 0.893 46 H 0.283 0.717 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.551 -0.708 -17.879 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.152 4.152 4 C 0.072 3.928 5 C -0.013 4.013 6 O -0.364 6.364 7 C -0.147 4.147 8 C -0.165 4.165 9 C -0.041 4.041 10 N -0.337 5.337 11 C 0.355 3.645 12 O -0.418 6.418 13 C -0.137 4.137 14 C -0.230 4.230 15 C -0.118 4.118 16 C -0.238 4.238 17 C 0.064 3.936 18 C -0.530 4.530 19 H 0.099 0.901 20 C -0.186 4.186 21 N -0.460 5.460 22 Si 0.805 3.195 23 H -0.193 1.193 24 H -0.193 1.193 25 H -0.173 1.173 26 C -0.150 4.150 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.112 0.888 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.216 0.784 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.134 0.866 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.167 0.833 44 H 0.155 0.845 45 H 0.125 0.875 46 H 0.093 0.907 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.651 -0.688 -17.714 18.606 hybrid contribution -0.602 0.986 1.266 1.713 sum 5.049 0.298 -16.448 17.208 Atomic orbital electron populations 1.21750 0.96239 1.01652 1.01015 1.21555 0.95577 0.96486 1.01581 1.21764 0.94730 0.97169 1.01577 1.21388 0.94873 0.91770 0.84757 1.22695 0.95820 0.91964 0.90847 1.87146 1.69471 1.26387 1.53368 1.22678 1.02299 0.94466 0.95238 1.23014 1.03676 0.96925 0.92929 1.22992 0.94361 0.88667 0.98120 1.48310 1.50562 1.30893 1.03979 1.18320 0.79087 0.84308 0.82750 1.90732 1.40152 1.25601 1.85342 1.19929 0.99131 1.00635 0.94017 1.21552 0.99101 1.01770 1.00566 1.20951 0.99130 0.99082 0.92625 1.21418 1.00407 1.02938 0.99010 1.17943 0.92436 0.89914 0.93275 1.19841 0.94721 1.43994 0.94416 0.90064 1.26829 0.98688 0.92002 1.01098 1.69891 1.11216 1.36031 1.28852 0.85176 0.77326 0.79318 0.77723 1.19259 1.19345 1.17315 1.21357 1.00175 1.00146 0.93314 0.90938 0.92157 0.95974 0.88842 0.95141 0.94829 0.89696 0.93806 0.90887 0.78351 0.87621 0.88377 0.90482 0.86615 0.89934 0.90533 0.83309 0.84458 0.87538 0.90669 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 9.91 71.98 0.71 -3.40 16 2 C -0.11 -3.19 4.34 30.60 0.13 -3.06 16 3 C -0.11 -3.39 3.87 30.60 0.12 -3.27 16 4 C 0.16 4.18 0.62 3.95 0.00 4.18 16 5 C 0.07 1.70 5.99 71.99 0.43 2.13 16 6 O -0.56 -19.60 9.29 -125.41 -1.17 -20.77 16 7 C -0.11 -1.70 5.48 31.78 0.17 -1.53 16 8 C -0.13 -2.09 6.49 32.06 0.21 -1.88 16 9 C 0.08 2.03 5.02 86.93 0.44 2.47 16 10 N -0.60 -20.55 1.98 -768.12 -1.52 -22.07 16 11 C 0.57 26.55 7.19 86.80 0.62 27.17 16 12 O -0.54 -29.29 12.30 19.72 0.24 -29.05 16 13 C -0.13 -6.75 5.75 -20.13 -0.12 -6.87 16 14 C -0.21 -8.81 7.99 22.70 0.18 -8.63 16 15 C -0.10 -4.16 10.01 22.18 0.22 -3.93 16 16 C -0.22 -10.68 9.78 22.77 0.22 -10.45 16 17 C 0.07 3.79 5.56 -21.32 -0.12 3.67 16 18 C -0.50 -28.49 9.06 23.47 0.21 -28.28 16 19 H 0.08 4.38 7.88 -2.91 -0.02 4.35 16 20 C 0.03 1.49 5.22 85.25 0.45 1.93 16 21 N -0.83 -48.48 10.85 21.82 0.24 -48.24 16 22 Si 0.98 41.58 29.58 68.60 2.03 43.61 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 26 C -0.13 -7.58 8.21 23.01 0.19 -7.39 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.09 1.90 5.93 -2.39 -0.01 1.88 16 31 H 0.03 1.06 7.31 -2.38 -0.02 1.05 16 32 H 0.03 1.38 6.43 -2.39 -0.02 1.36 16 33 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 34 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.37 9.78 9.12 -74.06 -0.68 9.11 16 37 H 0.11 1.22 7.33 -2.39 -0.02 1.21 16 38 H 0.10 1.13 7.86 -2.39 -0.02 1.11 16 39 H 0.08 1.37 5.97 -2.39 -0.01 1.35 16 40 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.08 1.79 7.42 -2.39 -0.02 1.77 16 42 H 0.08 2.22 5.88 -2.39 -0.01 2.21 16 43 H 0.15 4.92 4.23 -2.91 -0.01 4.91 16 44 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 45 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 46 H 0.28 15.24 8.30 -92.71 -0.77 14.47 16 47 H 0.09 6.08 5.95 -2.91 -0.02 6.06 16 Total: -1.00 -78.29 358.51 4.22 -74.07 By element: Atomic # 1 Polarization: 39.27 SS G_CDS: 0.31 Total: 39.58 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 4.08 Total: -37.14 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -1.28 Total: -70.31 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -0.92 Total: -49.81 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -78.29 4.22 -74.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278074670.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.617 kcal (2) G-P(sol) polarization free energy of solvation -78.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds