Wall clock time and date at job start Tue Mar 31 2020 12:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47203 * 2 1 4 4 C 1.52994 * 109.47324 * 180.16027 * 3 2 1 5 5 C 1.52997 * 110.00015 * 175.46478 * 4 3 2 6 6 O 1.42898 * 109.47504 * 301.54371 * 5 4 3 7 7 C 1.54317 * 109.88497 * 296.56694 * 4 3 2 8 8 C 1.55161 * 102.94605 * 141.60828 * 7 4 3 9 9 C 1.55135 * 101.48088 * 324.33355 * 8 7 4 10 10 N 1.47025 * 109.87954 * 54.37232 * 4 3 2 11 11 C 1.34776 * 125.64665 * 61.60737 * 10 4 3 12 12 O 1.21588 * 120.00467 * 354.32670 * 11 10 4 13 13 C 1.47647 * 120.00137 * 174.32797 * 11 10 4 14 14 C 1.40010 * 119.89808 * 202.07013 * 13 11 10 15 15 C 1.36312 * 120.10808 * 179.97438 * 14 13 11 16 16 C 1.40895 * 119.89059 * 359.97438 * 15 14 13 17 17 C 1.41111 * 120.10147 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00022 * 330.58914 * 17 16 15 19 19 C 1.40226 * 119.99835 * 150.59491 * 17 16 15 20 20 N 1.30651 * 119.99745 * 349.07979 * 19 17 16 21 21 Si 1.86794 * 120.00014 * 169.35501 * 19 17 16 22 22 H 1.48503 * 109.47402 * 179.72304 * 21 19 17 23 23 H 1.48503 * 109.47064 * 299.72115 * 21 19 17 24 24 H 1.48496 * 109.47334 * 59.72336 * 21 19 17 25 25 C 1.40890 * 119.79392 * 0.27717 * 16 15 14 26 26 C 1.36317 * 119.88849 * 359.46142 * 25 16 15 27 27 H 1.08995 * 109.47070 * 60.00447 * 1 2 3 28 28 H 1.08997 * 109.47021 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46773 * 300.00227 * 1 2 3 30 30 H 1.08996 * 109.46773 * 239.99773 * 2 1 3 31 31 H 1.09004 * 109.46959 * 119.99492 * 2 1 3 32 32 H 1.08997 * 109.47207 * 60.15812 * 3 2 1 33 33 H 1.09008 * 109.46701 * 300.16538 * 3 2 1 34 34 H 1.09002 * 109.46847 * 61.54526 * 5 4 3 35 35 H 1.09000 * 109.47649 * 181.53723 * 5 4 3 36 36 H 0.96697 * 114.00322 * 179.97438 * 6 5 4 37 37 H 1.09000 * 110.72082 * 259.97114 * 7 4 3 38 38 H 1.09002 * 110.72097 * 23.24155 * 7 4 3 39 39 H 1.08995 * 111.00207 * 82.57024 * 8 7 4 40 40 H 1.08997 * 111.00452 * 206.38667 * 8 7 4 41 41 H 1.09004 * 110.49430 * 278.44761 * 9 8 7 42 42 H 1.09003 * 110.33736 * 156.06284 * 9 8 7 43 43 H 1.08002 * 119.94370 * 359.97438 * 14 13 11 44 44 H 1.07997 * 120.05768 * 179.97438 * 15 14 13 45 45 H 0.97003 * 119.99787 * 180.02562 * 20 19 17 46 46 H 1.07997 * 120.05238 * 179.72445 * 25 16 15 47 47 H 1.07996 * 119.94706 * 180.27434 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0040 5 6 4.0930 2.8758 -0.1178 6 8 3.5905 3.4727 -1.3149 7 6 4.0983 0.7923 1.2919 8 6 5.3299 -0.0131 0.7997 9 6 4.8484 -0.4918 -0.5952 10 7 4.0670 0.6382 -1.1299 11 6 3.8409 0.8891 -2.4347 12 8 3.0909 1.7892 -2.7597 13 6 4.5040 0.0709 -3.4695 14 6 4.6590 0.5768 -4.7658 15 6 5.2710 -0.1747 -5.7244 16 6 5.7483 -1.4622 -5.4088 17 6 6.3830 -2.2438 -6.3976 18 1 6.1135 -2.1234 -7.4364 19 6 7.3635 -3.1769 -6.0312 20 7 7.8430 -3.1774 -4.8159 21 14 7.9897 -4.4139 -7.2829 22 1 9.0200 -5.2779 -6.6525 23 1 6.8605 -5.2547 -7.7555 24 1 8.5864 -3.6929 -8.4358 25 6 5.5852 -1.9690 -4.1044 26 6 4.9767 -1.2080 -3.1511 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 1.6791 1.9555 0.8914 33 1 1.6743 1.9571 -0.8886 34 1 3.7594 3.4537 0.7441 35 1 5.1825 2.8639 -0.1473 36 1 3.8819 4.3845 -1.4522 37 1 4.3984 1.5544 2.0112 38 1 3.3498 0.1273 1.7227 39 1 6.2074 0.6279 0.7151 40 1 5.5296 -0.8609 1.4550 41 1 4.2189 -1.3764 -0.4987 42 1 5.7023 -0.7012 -1.2394 43 1 4.2932 1.5640 -5.0066 44 1 5.3898 0.2161 -6.7242 45 1 8.5216 -3.8227 -4.5625 46 1 5.9455 -2.9571 -3.8591 47 1 4.8551 -1.5938 -2.1498 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278130956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:07 Heat of formation + Delta-G solvation = -57.838075 kcal Electronic energy + Delta-G solvation = -27890.351593 eV Core-core repulsion = 24230.923826 eV Total energy + Delta-G solvation = -3659.427767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.32173 -37.82425 -36.46123 -35.89990 -34.27605 -33.67325 -31.61277 -30.47289 -29.60200 -29.36128 -26.14573 -25.82845 -25.01677 -22.69991 -21.79926 -21.36649 -20.75517 -19.89512 -17.94972 -17.40233 -17.09642 -16.08312 -15.89917 -15.40491 -15.13914 -14.97415 -14.29695 -13.93524 -13.67067 -13.54573 -13.32575 -13.08007 -12.93869 -12.78127 -12.44818 -12.28460 -12.13833 -12.03531 -11.84284 -11.51160 -11.34418 -11.29351 -11.19466 -11.02832 -10.90206 -10.79215 -10.63488 -10.51562 -10.36975 -10.16076 -9.88960 -9.60412 -9.36670 -9.24319 -8.60099 -7.96898 -7.60766 -7.38259 -6.88372 -4.52403 2.39352 2.99008 3.00449 3.02997 3.08463 3.60681 3.82133 4.00929 4.38538 4.61789 4.65772 4.76160 4.97903 5.12174 5.21088 5.28289 5.43295 5.45930 5.51037 5.59656 5.61463 5.68628 5.72991 5.77727 5.90758 5.96797 6.02025 6.05513 6.10346 6.18347 6.21053 6.27249 6.33903 6.38235 6.51632 6.67747 6.84611 6.92973 7.01949 7.15002 7.22933 7.54215 7.74419 7.90928 7.94964 7.99340 8.16892 8.40010 8.49978 8.73558 8.84469 9.31970 10.04141 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.003575 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.898096 B = 7830.193486 C = 8075.145528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.119 4.119 4 C 0.172 3.828 5 C 0.072 3.928 6 O -0.526 6.526 7 C -0.127 4.127 8 C -0.137 4.137 9 C 0.092 3.908 10 N -0.611 5.611 11 C 0.584 3.416 12 O -0.526 6.526 13 C -0.265 4.265 14 C -0.030 4.030 15 C -0.233 4.233 16 C 0.127 3.873 17 C -0.453 4.453 18 H 0.081 0.919 19 C 0.074 3.926 20 N -0.787 5.787 21 Si 0.914 3.086 22 H -0.277 1.277 23 H -0.262 1.262 24 H -0.264 1.264 25 C -0.171 4.171 26 C -0.091 4.091 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.358 0.642 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.284 0.716 46 H 0.119 0.881 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.923 4.062 13.068 14.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.158 4.158 4 C 0.087 3.913 5 C -0.007 4.007 6 O -0.328 6.328 7 C -0.164 4.164 8 C -0.175 4.175 9 C -0.031 4.031 10 N -0.348 5.348 11 C 0.378 3.622 12 O -0.403 6.403 13 C -0.270 4.270 14 C -0.050 4.050 15 C -0.253 4.253 16 C 0.124 3.876 17 C -0.482 4.482 18 H 0.099 0.901 19 C -0.145 4.145 20 N -0.412 5.412 21 Si 0.738 3.262 22 H -0.202 1.202 23 H -0.187 1.187 24 H -0.188 1.188 25 C -0.190 4.190 26 C -0.110 4.110 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.203 0.797 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.095 0.905 46 H 0.137 0.863 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.449 3.856 12.863 14.146 hybrid contribution 0.862 -0.084 -0.314 0.921 sum -3.587 3.772 12.549 13.585 Atomic orbital electron populations 1.21739 0.96322 1.01101 1.01435 1.21501 0.95273 0.97120 1.01824 1.21855 0.93866 0.97114 1.02936 1.20853 0.94279 0.89623 0.86571 1.22497 0.96846 0.93555 0.87836 1.87084 1.74419 1.30243 1.41030 1.22732 0.98185 0.99786 0.95736 1.22891 0.97605 1.00213 0.96762 1.22807 0.96431 0.89725 0.94162 1.48340 1.54057 1.27741 1.04619 1.18250 0.80708 0.83136 0.80058 1.90685 1.36782 1.32527 1.80265 1.19004 1.15972 0.97805 0.94193 1.20316 0.95096 0.97760 0.91781 1.20763 1.10190 0.95806 0.98524 1.17787 0.87110 0.89891 0.92781 1.19729 1.17043 1.16097 0.95282 0.90130 1.26005 0.95514 0.96889 0.96070 1.69708 1.21480 1.31041 1.18966 0.86269 0.79021 0.80039 0.80887 1.20181 1.18687 1.18845 1.21026 1.03591 1.00353 0.94056 1.21292 0.97138 0.93922 0.98620 0.92744 0.93149 0.93301 0.91652 0.92626 0.92566 0.89228 0.94198 0.94243 0.79707 0.90647 0.89860 0.90825 0.90204 0.91862 0.88517 0.88427 0.88563 0.90538 0.86271 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.12 -1.63 5.51 -26.73 -0.15 -1.77 16 3 C -0.12 -1.72 4.02 -26.73 -0.11 -1.82 16 4 C 0.17 2.44 0.49 -130.85 -0.06 2.38 16 5 C 0.07 0.99 5.96 37.16 0.22 1.21 16 6 O -0.53 -8.63 9.40 -59.51 -0.56 -9.19 16 7 C -0.13 -1.35 5.84 -24.90 -0.15 -1.49 16 8 C -0.14 -1.52 7.10 -24.46 -0.17 -1.70 16 9 C 0.09 1.36 5.03 -2.41 -0.01 1.34 16 10 N -0.61 -10.51 1.86 -156.84 -0.29 -10.80 16 11 C 0.58 12.58 7.01 -12.42 -0.09 12.50 16 12 O -0.53 -12.40 12.46 -18.99 -0.24 -12.63 16 13 C -0.27 -6.18 5.82 -104.73 -0.61 -6.79 16 14 C -0.03 -0.73 9.52 -39.61 -0.38 -1.11 16 15 C -0.23 -5.79 9.73 -39.27 -0.38 -6.18 16 16 C 0.13 3.31 5.54 -106.80 -0.59 2.72 16 17 C -0.45 -11.58 9.05 -37.75 -0.34 -11.93 16 18 H 0.08 1.98 7.87 -52.49 -0.41 1.56 16 19 C 0.07 1.78 5.24 -17.31 -0.09 1.69 16 20 N -0.79 -19.25 10.90 55.56 0.61 -18.64 16 21 Si 0.91 17.85 29.57 -169.99 -5.03 12.82 16 22 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 24 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 25 C -0.17 -4.25 8.59 -39.27 -0.34 -4.59 16 26 C -0.09 -2.06 7.96 -39.61 -0.32 -2.37 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.07 7.38 -51.93 -0.38 0.69 16 31 H 0.06 0.66 6.28 -51.93 -0.33 0.33 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.62 6.30 -51.92 -0.33 1.29 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.36 4.33 9.12 45.56 0.42 4.75 16 37 H 0.07 0.67 7.83 -51.93 -0.41 0.26 16 38 H 0.08 0.82 5.98 -51.93 -0.31 0.51 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.89 7.54 -51.93 -0.39 0.50 16 42 H 0.10 1.62 5.62 -51.93 -0.29 1.33 16 43 H 0.10 2.28 7.79 -52.49 -0.41 1.88 16 44 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 45 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 46 H 0.12 3.01 6.28 -52.49 -0.33 2.68 16 47 H 0.11 2.16 3.97 -52.49 -0.21 1.95 16 LS Contribution 361.27 15.07 5.44 5.44 Total: -1.00 -29.88 361.27 -9.58 -39.46 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -6.32 Total: 12.90 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -3.19 Total: -19.36 kcal Atomic # 7 Polarization: -29.76 SS G_CDS: 0.31 Total: -29.45 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.80 Total: -21.82 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.88 -9.58 -39.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278130956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.380 kcal (2) G-P(sol) polarization free energy of solvation -29.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds