Wall clock time and date at job start Tue Mar 31 2020 12:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.46993 * 2 1 4 4 C 1.50706 * 109.47269 * 119.99911 * 2 1 3 5 5 O 1.21286 * 120.00189 * 120.00087 * 4 2 1 6 6 N 1.34773 * 119.99707 * 300.00349 * 4 2 1 7 7 C 1.39920 * 120.00098 * 185.27535 * 6 4 2 8 8 C 1.38929 * 120.04186 * 213.33933 * 7 6 4 9 9 C 1.38126 * 120.04153 * 179.97438 * 8 7 6 10 10 C 1.38218 * 120.12270 * 359.67773 * 9 8 7 11 11 C 1.38771 * 120.08325 * 0.59392 * 10 9 8 12 12 O 1.35896 * 120.01997 * 179.69896 * 11 10 9 13 13 C 1.42900 * 117.00231 * 359.72934 * 12 11 10 14 14 C 1.53002 * 109.46937 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46878 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99710 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99984 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99858 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00172 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47051 * 89.99848 * 19 17 15 21 21 H 1.48493 * 109.46997 * 210.00061 * 19 17 15 22 22 H 1.48498 * 109.46708 * 329.99720 * 19 17 15 23 23 C 1.38624 * 119.95660 * 359.43049 * 11 10 9 24 24 C 1.52999 * 109.47514 * 239.99906 * 2 1 3 25 25 C 1.52996 * 117.49752 * 128.74317 * 24 2 1 26 26 C 1.53002 * 117.49457 * 60.08468 * 24 2 1 27 27 H 1.09004 * 109.47546 * 299.99784 * 1 2 3 28 28 H 1.08998 * 109.47489 * 60.00197 * 1 2 3 29 29 H 1.09006 * 109.47181 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47488 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47107 * 299.99808 * 3 2 1 32 32 H 1.08999 * 109.47250 * 59.99804 * 3 2 1 33 33 H 0.97008 * 120.00627 * 5.27212 * 6 4 2 34 34 H 1.07998 * 119.98806 * 359.97055 * 8 7 6 35 35 H 1.07994 * 119.94428 * 179.97438 * 9 8 7 36 36 H 1.07999 * 119.96268 * 180.32247 * 10 9 8 37 37 H 1.08997 * 109.46723 * 299.99846 * 13 12 11 38 38 H 1.09002 * 109.46796 * 59.99777 * 13 12 11 39 39 H 1.08997 * 109.46996 * 299.99891 * 14 13 12 40 40 H 1.09003 * 109.46942 * 60.00083 * 14 13 12 41 41 H 0.97005 * 119.99998 * 180.02562 * 18 17 15 42 42 H 1.08001 * 120.06373 * 180.24932 * 23 11 10 43 43 H 1.08999 * 115.55129 * 274.41941 * 24 2 1 44 44 H 1.08997 * 117.50145 * 0.02562 * 25 24 2 45 45 H 1.09009 * 117.49630 * 145.02515 * 25 24 2 46 46 H 1.09001 * 117.49626 * 214.97432 * 26 24 2 47 47 H 1.08997 * 117.50107 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7066 -0.2499 2.4545 7 6 2.2613 -0.8413 3.5949 8 6 1.5212 -0.9188 4.7681 9 6 2.0686 -1.5030 5.8937 10 6 3.3507 -2.0178 5.8542 11 6 4.0966 -1.9382 4.6867 12 8 5.3593 -2.4393 4.6511 13 6 5.8575 -3.0289 5.8537 14 6 7.2831 -3.5336 5.6216 15 6 7.8087 -4.1548 6.8901 16 1 7.1878 -4.1868 7.7732 17 6 9.0817 -4.6832 6.9228 18 7 9.5402 -5.2258 8.0296 19 14 10.1553 -4.6285 5.3951 20 1 10.9454 -3.3711 5.3902 21 1 11.0774 -5.7924 5.3962 22 1 9.2966 -4.6783 4.1847 23 6 3.5508 -1.3521 3.5552 24 6 2.0400 -0.7212 -1.2492 25 6 3.0763 0.0040 -2.1100 26 6 1.6374 -0.1483 -2.6095 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9563 0.8899 33 1 1.0877 0.4915 2.5451 34 1 0.5173 -0.5219 4.8002 35 1 1.4920 -1.5621 6.8049 36 1 3.7742 -2.4788 6.7343 37 1 5.8603 -2.2840 6.6494 38 1 5.2187 -3.8644 6.1404 39 1 7.2798 -4.2786 4.8260 40 1 7.9220 -2.6983 5.3347 41 1 10.4360 -5.5972 8.0528 42 1 4.1283 -1.2928 2.6445 43 1 2.1253 -1.8046 -1.1647 44 1 3.3949 0.9948 -1.7862 45 1 3.8432 -0.6023 -2.5921 46 1 1.4583 -0.8547 -3.4201 47 1 1.0095 0.7426 -2.6145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287044210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:14 Heat of formation + Delta-G solvation = -53.177395 kcal Electronic energy + Delta-G solvation = -25947.841005 eV Core-core repulsion = 22288.615340 eV Total energy + Delta-G solvation = -3659.225665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.03184 -40.87144 -39.20571 -38.15297 -35.87630 -35.37907 -33.98800 -32.96419 -31.11708 -30.12046 -28.40138 -27.15023 -25.68225 -24.41235 -23.45086 -23.10997 -22.78041 -21.63840 -20.10132 -19.58160 -18.79451 -18.08312 -17.44970 -17.05639 -16.94972 -16.84236 -16.51562 -16.25765 -15.93140 -15.52546 -15.09225 -14.85679 -14.53750 -14.47816 -14.35847 -13.84924 -13.71020 -13.46478 -13.33168 -13.18807 -13.05034 -12.76463 -12.68606 -12.48678 -12.39585 -12.12719 -12.01708 -11.88472 -11.78459 -11.70383 -11.48742 -11.30047 -11.24158 -10.96112 -10.84562 -10.68396 -9.45200 -9.04607 -8.38062 -6.44403 0.20276 0.45349 1.32095 1.33976 1.47031 1.53752 1.85772 2.30038 2.34965 2.79599 2.90650 2.96588 3.48257 3.57444 3.87518 3.91532 4.02947 4.10940 4.13906 4.15731 4.18608 4.22505 4.27839 4.38706 4.45008 4.54858 4.61117 4.69451 4.70934 4.78004 4.85111 4.89146 4.94221 5.03526 5.06576 5.19972 5.23292 5.24860 5.26936 5.28655 5.31895 5.36149 5.37101 5.45148 5.51284 5.88419 6.13190 6.37541 6.48779 6.60477 7.09377 7.20724 8.77476 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015908 B = 0.002656 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.677177 B =10540.515160 C =12022.536807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.038 4.038 3 C -0.146 4.146 4 C 0.515 3.485 5 O -0.560 6.560 6 N -0.655 5.655 7 C 0.179 3.821 8 C -0.174 4.174 9 C -0.053 4.053 10 C -0.236 4.236 11 C 0.125 3.875 12 O -0.341 6.341 13 C 0.087 3.913 14 C -0.007 4.007 15 C -0.535 4.535 16 H 0.046 0.954 17 C 0.016 3.984 18 N -0.939 5.939 19 Si 0.946 3.054 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.257 1.257 23 C -0.184 4.184 24 C -0.156 4.156 25 C -0.193 4.193 26 C -0.150 4.150 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.430 0.570 34 H 0.169 0.831 35 H 0.164 0.836 36 H 0.129 0.871 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.022 0.978 40 H 0.025 0.975 41 H 0.271 0.729 42 H 0.111 0.889 43 H 0.082 0.918 44 H 0.111 0.889 45 H 0.081 0.919 46 H 0.098 0.902 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.441 18.503 -18.305 36.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.041 4.041 3 C -0.203 4.203 4 C 0.304 3.696 5 O -0.437 6.437 6 N -0.302 5.302 7 C 0.084 3.916 8 C -0.194 4.194 9 C -0.071 4.071 10 C -0.256 4.256 11 C 0.079 3.921 12 O -0.256 6.256 13 C 0.013 3.987 14 C -0.045 4.045 15 C -0.573 4.573 16 H 0.064 0.936 17 C -0.182 4.182 18 N -0.579 5.579 19 Si 0.769 3.231 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.182 1.182 23 C -0.206 4.206 24 C -0.175 4.175 25 C -0.229 4.229 26 C -0.186 4.186 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.271 0.729 34 H 0.186 0.814 35 H 0.182 0.818 36 H 0.147 0.853 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.041 0.959 40 H 0.043 0.957 41 H 0.080 0.920 42 H 0.129 0.871 43 H 0.100 0.900 44 H 0.129 0.871 45 H 0.100 0.900 46 H 0.116 0.884 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -24.664 17.743 -18.529 35.587 hybrid contribution 1.097 -0.585 0.085 1.246 sum -23.567 17.158 -18.443 34.496 Atomic orbital electron populations 1.21910 0.89683 1.02939 1.04960 1.20269 0.98729 0.96213 0.88916 1.22067 1.01237 0.91988 1.04984 1.21517 0.79054 0.83590 0.85407 1.90762 1.38519 1.27451 1.86955 1.43411 1.47116 1.36386 1.03278 1.17452 0.90243 0.95902 0.87972 1.21130 1.01265 1.05576 0.91452 1.21139 0.93069 0.93631 0.99301 1.21526 0.98025 1.08510 0.97521 1.19189 0.84338 0.93823 0.94725 1.86041 1.27904 1.72587 1.39027 1.22706 0.95599 0.96241 0.84175 1.19457 0.91914 0.96388 0.96732 1.21074 1.00366 1.38896 0.96961 0.93588 1.25820 0.99113 0.93875 0.99392 1.70013 1.18676 1.40247 1.28947 0.85724 0.78753 0.78595 0.80048 1.18764 1.20145 1.18155 1.20210 0.96126 1.06945 0.97282 1.22009 1.05714 0.98484 0.91291 1.23236 0.93229 1.02594 1.03869 1.23080 0.97094 1.03462 0.95000 0.89789 0.88876 0.93043 0.93086 0.88657 0.89940 0.72906 0.81372 0.81843 0.85276 0.91809 0.92332 0.95950 0.95662 0.92013 0.87066 0.89988 0.87097 0.90014 0.88401 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.21 71.98 0.59 -0.46 16 2 C -0.04 -0.52 0.73 -52.93 -0.04 -0.56 16 3 C -0.15 -1.32 6.97 71.98 0.50 -0.81 16 4 C 0.52 11.66 6.22 87.66 0.55 12.20 16 5 O -0.56 -19.23 13.33 -3.05 -0.04 -19.27 16 6 N -0.65 -11.78 5.12 -303.55 -1.55 -13.33 16 7 C 0.18 4.50 6.28 38.14 0.24 4.74 16 8 C -0.17 -3.39 9.96 22.41 0.22 -3.16 16 9 C -0.05 -1.18 10.03 22.24 0.22 -0.95 16 10 C -0.24 -7.32 9.04 22.39 0.20 -7.12 16 11 C 0.13 4.70 6.68 22.49 0.15 4.85 16 12 O -0.34 -15.02 10.13 -92.38 -0.94 -15.95 16 13 C 0.09 3.87 4.68 71.98 0.34 4.21 16 14 C -0.01 -0.38 4.41 29.85 0.13 -0.25 16 15 C -0.54 -31.63 9.66 25.60 0.25 -31.38 16 16 H 0.05 2.90 7.99 -2.91 -0.02 2.87 16 17 C 0.02 0.98 5.47 84.65 0.46 1.44 16 18 N -0.94 -58.93 13.96 21.45 0.30 -58.63 16 19 Si 0.95 45.93 27.47 68.60 1.88 47.81 16 20 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.26 -12.20 6.54 99.48 0.65 -11.55 16 23 C -0.18 -6.42 8.59 22.49 0.19 -6.22 16 24 C -0.16 -2.72 4.75 -10.79 -0.05 -2.77 16 25 C -0.19 -2.96 9.57 30.62 0.29 -2.67 16 26 C -0.15 -1.64 9.39 30.62 0.29 -1.35 16 27 H 0.08 0.25 7.45 -2.39 -0.02 0.24 16 28 H 0.09 0.36 7.29 -2.39 -0.02 0.34 16 29 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.05 0.67 6.97 -2.39 -0.02 0.65 16 31 H 0.09 0.46 7.07 -2.39 -0.02 0.44 16 32 H 0.08 0.42 7.69 -2.39 -0.02 0.41 16 33 H 0.43 3.67 7.68 -92.70 -0.71 2.96 16 34 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 35 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.13 4.00 6.29 -2.91 -0.02 3.98 16 37 H 0.06 2.69 7.67 -2.39 -0.02 2.67 16 38 H 0.06 2.53 7.65 -2.39 -0.02 2.51 16 39 H 0.02 1.16 7.20 -2.39 -0.02 1.14 16 40 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 41 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 42 H 0.11 4.41 6.41 -2.91 -0.02 4.39 16 43 H 0.08 1.99 7.47 -2.39 -0.02 1.97 16 44 H 0.11 1.44 5.85 -2.39 -0.01 1.42 16 45 H 0.08 1.42 8.14 -2.38 -0.02 1.41 16 46 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.12 0.71 7.07 -2.39 -0.02 0.69 16 Total: -1.00 -79.29 375.59 4.40 -74.89 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.21 Total: 14.75 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: 4.54 Total: -30.27 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -1.25 Total: -71.96 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -0.98 Total: -35.22 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.88 Total: 47.81 kcal Total: -79.29 4.40 -74.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287044210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.710 kcal (2) G-P(sol) polarization free energy of solvation -79.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds