Wall clock time and date at job start Tue Mar 31 2020 12:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46606 * 2 1 4 4 C 1.53001 * 109.46463 * 177.11068 * 3 2 1 5 5 C 1.53001 * 110.30613 * 57.34436 * 4 3 2 6 6 O 1.42905 * 109.47178 * 52.81035 * 5 4 3 7 7 C 1.54279 * 110.34988 * 295.16588 * 4 3 2 8 8 C 1.54382 * 104.96284 * 241.13349 * 7 4 3 9 9 N 1.48145 * 104.61646 * 336.12807 * 8 7 4 10 10 C 1.34780 * 127.83860 * 219.58165 * 9 8 7 11 11 O 1.21583 * 119.99906 * 183.34689 * 10 9 8 12 12 C 1.47641 * 119.99858 * 3.35902 * 10 9 8 13 13 C 1.40012 * 119.89790 * 68.51434 * 12 10 9 14 14 C 1.36316 * 120.10617 * 180.25764 * 13 12 10 15 15 C 1.40883 * 119.89452 * 359.48990 * 14 13 12 16 16 C 1.41103 * 120.10530 * 180.23324 * 15 14 13 17 17 H 1.08002 * 120.00027 * 154.48617 * 16 15 14 18 18 C 1.40229 * 120.00267 * 334.48532 * 16 15 14 19 19 N 1.30639 * 119.99636 * 342.67140 * 18 16 15 20 20 Si 1.86798 * 119.99874 * 162.67326 * 18 16 15 21 21 H 1.48495 * 109.47020 * 90.00253 * 20 18 16 22 22 H 1.48503 * 109.46722 * 210.00034 * 20 18 16 23 23 H 1.48493 * 109.47328 * 329.99596 * 20 18 16 24 24 C 1.40885 * 119.79104 * 0.26128 * 15 14 13 25 25 C 1.36321 * 119.89452 * 359.97438 * 24 15 14 26 26 C 1.48145 * 104.32437 * 39.84918 * 9 8 7 27 27 H 1.09001 * 109.46685 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46911 * 299.99141 * 1 2 3 29 29 H 1.08997 * 109.47260 * 60.00034 * 1 2 3 30 30 H 1.09003 * 109.46843 * 240.00288 * 2 1 3 31 31 H 1.08993 * 109.47353 * 120.00459 * 2 1 3 32 32 H 1.08992 * 109.46865 * 57.11851 * 3 2 1 33 33 H 1.08992 * 109.47210 * 297.11224 * 3 2 1 34 34 H 1.09001 * 109.47502 * 172.80723 * 5 4 3 35 35 H 1.08995 * 109.47261 * 292.80961 * 5 4 3 36 36 H 0.96699 * 114.00009 * 180.02562 * 6 5 4 37 37 H 1.08994 * 110.34649 * 122.25631 * 7 4 3 38 38 H 1.09005 * 110.42778 * 0.04525 * 7 4 3 39 39 H 1.09001 * 110.41016 * 217.34407 * 8 7 4 40 40 H 1.09001 * 110.50786 * 94.96255 * 8 7 4 41 41 H 1.07997 * 119.95046 * 0.02562 * 13 12 10 42 42 H 1.08000 * 120.05095 * 179.77728 * 14 13 12 43 43 H 0.97003 * 120.00154 * 179.97438 * 19 18 16 44 44 H 1.07999 * 120.05586 * 180.02562 * 24 15 14 45 45 H 1.07996 * 119.94795 * 180.02562 * 25 24 15 46 46 H 1.09004 * 110.40733 * 78.93243 * 26 9 8 47 47 H 1.08999 * 110.40950 * 201.37107 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5682 1.4431 0.0727 5 6 4.1557 0.6489 -1.0956 6 8 3.6148 1.1386 -2.3243 7 6 4.0416 0.8503 1.4161 8 6 4.8232 1.9914 2.1020 9 7 5.2624 2.8652 0.9892 10 6 6.4461 3.4944 0.8499 11 8 6.6350 4.2311 -0.0988 12 6 7.5135 3.2890 1.8490 13 6 8.1460 2.0439 1.9485 14 6 9.1284 1.8479 2.8731 15 6 9.5144 2.9039 3.7220 16 6 10.5342 2.7074 4.6773 17 1 11.1135 3.5481 5.0295 18 6 10.7955 1.4206 5.1694 19 7 9.9094 0.4722 5.0211 20 14 12.4106 1.0626 6.0369 21 1 12.2583 1.3183 7.4917 22 1 12.7844 -0.3583 5.8205 23 1 13.4731 1.9429 5.4881 24 6 8.8786 4.1565 3.6146 25 6 7.8939 4.3416 2.6902 26 6 4.1030 2.8958 0.0676 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6350 1.9710 0.8630 33 1 1.7195 1.9412 -0.9147 34 1 5.2396 0.7636 -1.1045 35 1 3.9028 -0.4052 -0.9819 36 1 3.9436 0.6797 -3.1094 37 1 4.6940 -0.0056 1.2437 38 1 3.1864 0.5574 2.0251 39 1 5.6861 1.5936 2.6362 40 1 4.1753 2.5416 2.7843 41 1 7.8526 1.2362 1.2943 42 1 9.6132 0.8860 2.9515 43 1 10.0902 -0.4181 5.3611 44 1 9.1714 4.9691 4.2629 45 1 7.4063 5.3016 2.6069 46 1 3.3426 3.5845 0.4361 47 1 4.4217 3.1810 -0.9349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290644404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:42 Heat of formation + Delta-G solvation = -83.100406 kcal Electronic energy + Delta-G solvation = -26809.102069 eV Core-core repulsion = 23148.578845 eV Total energy + Delta-G solvation = -3660.523224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.09691 -38.36773 -37.02295 -36.07696 -34.69318 -33.80832 -31.56044 -30.09394 -29.51140 -29.25538 -26.71446 -26.29285 -25.13256 -22.97930 -22.03000 -21.19899 -20.98103 -19.07360 -18.65180 -17.47933 -17.34622 -16.46669 -16.09668 -15.55984 -15.47504 -15.18901 -14.42593 -14.27193 -14.07750 -13.77841 -13.43837 -13.31536 -13.04320 -12.81604 -12.55238 -12.40216 -12.18464 -12.06845 -12.00439 -11.77985 -11.65773 -11.34809 -11.30447 -11.20756 -11.06861 -11.00078 -10.74604 -10.60778 -10.48320 -10.37642 -10.07192 -9.96705 -9.54781 -9.30495 -9.02296 -8.30067 -7.68829 -7.49847 -6.95744 -4.53347 2.47541 2.96802 2.97749 3.00921 3.04985 3.40232 3.58344 3.79957 4.07094 4.46357 4.48933 4.62562 4.73014 4.96845 5.06717 5.11249 5.27145 5.34081 5.36185 5.47850 5.53763 5.54637 5.67233 5.70450 5.73648 5.79730 5.89448 5.91786 5.99972 6.06557 6.10894 6.14293 6.16753 6.21663 6.26996 6.34106 6.69698 6.81406 6.88896 7.06548 7.15993 7.47216 7.52745 7.64564 7.88152 7.89609 8.08938 8.13895 8.45416 8.70173 8.79426 8.88404 9.97459 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019420 B = 0.003002 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.446306 B = 9326.131357 C =10021.603273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.098 4.098 4 C -0.069 4.069 5 C 0.090 3.910 6 O -0.569 6.569 7 C -0.126 4.126 8 C 0.103 3.897 9 N -0.624 5.624 10 C 0.603 3.397 11 O -0.559 6.559 12 C -0.265 4.265 13 C -0.065 4.065 14 C -0.170 4.170 15 C 0.123 3.877 16 C -0.452 4.452 17 H 0.082 0.918 18 C 0.076 3.924 19 N -0.780 5.780 20 Si 0.910 3.090 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.259 1.259 24 C -0.230 4.230 25 C -0.044 4.044 26 C 0.115 3.885 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.376 0.624 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.284 0.716 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.065 0.935 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.411 -5.681 -5.735 15.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.136 4.136 4 C -0.070 4.070 5 C 0.013 3.987 6 O -0.374 6.374 7 C -0.164 4.164 8 C -0.020 4.020 9 N -0.358 5.358 10 C 0.396 3.604 11 O -0.437 6.437 12 C -0.269 4.269 13 C -0.084 4.084 14 C -0.189 4.189 15 C 0.121 3.879 16 C -0.480 4.480 17 H 0.100 0.900 18 C -0.144 4.144 19 N -0.404 5.404 20 Si 0.734 3.266 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.183 1.183 24 C -0.249 4.249 25 C -0.063 4.063 26 C -0.008 4.008 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.223 0.777 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.137 0.863 43 H 0.095 0.905 44 H 0.115 0.885 45 H 0.108 0.892 46 H 0.083 0.917 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.545 -5.068 -5.772 15.571 hybrid contribution 0.923 -0.745 0.150 1.195 sum -12.622 -5.813 -5.622 14.990 Atomic orbital electron populations 1.21761 0.96103 1.01287 1.01701 1.21578 0.95558 0.97065 1.01958 1.21524 0.92700 0.96999 1.02372 1.21598 0.95963 0.95561 0.93860 1.22207 0.96646 0.96003 0.83863 1.86458 1.71141 1.63848 1.15928 1.22654 1.00308 0.98444 0.95018 1.22318 0.99354 0.90531 0.89801 1.49113 1.13719 1.49844 1.23151 1.18507 0.79984 0.77002 0.84954 1.90680 1.81000 1.38399 1.33640 1.18750 1.05012 0.96980 1.06132 1.20269 0.97024 0.93628 0.97456 1.20936 1.00723 1.00503 0.96732 1.17705 0.89607 0.90767 0.89869 1.19729 1.14775 0.93760 1.19747 0.90005 1.26017 0.97650 0.95707 0.94997 1.69729 1.32714 1.03427 1.34559 0.86277 0.81944 0.78565 0.79852 1.19288 1.19920 1.18252 1.20667 1.01736 0.98846 1.03657 1.20137 0.96444 0.95411 0.94290 1.22336 0.87984 0.94768 0.95718 0.93058 0.92860 0.92846 0.91939 0.91991 0.91922 0.90965 0.93519 0.93437 0.77732 0.90830 0.89903 0.88916 0.91584 0.89475 0.86256 0.90494 0.88475 0.89170 0.91704 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.12 -1.06 5.29 -26.73 -0.14 -1.20 16 3 C -0.10 -0.97 3.76 -26.73 -0.10 -1.07 16 4 C -0.07 -0.80 0.58 -152.89 -0.09 -0.89 16 5 C 0.09 1.02 5.05 37.16 0.19 1.20 16 6 O -0.57 -6.19 12.50 -35.23 -0.44 -6.64 16 7 C -0.13 -1.43 5.74 -25.34 -0.15 -1.58 16 8 C 0.10 1.51 6.91 -2.41 -0.02 1.50 16 9 N -0.62 -10.93 3.31 -170.24 -0.56 -11.49 16 10 C 0.60 13.15 7.30 -12.42 -0.09 13.06 16 11 O -0.56 -13.87 17.39 5.29 0.09 -13.78 16 12 C -0.26 -6.06 4.85 -104.73 -0.51 -6.57 16 13 C -0.06 -1.48 8.68 -39.61 -0.34 -1.82 16 14 C -0.17 -4.20 8.63 -39.27 -0.34 -4.54 16 15 C 0.12 3.16 5.57 -106.81 -0.59 2.56 16 16 C -0.45 -11.37 9.04 -37.75 -0.34 -11.71 16 17 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 18 C 0.08 1.80 5.14 -17.31 -0.09 1.71 16 19 N -0.78 -18.74 10.98 55.56 0.61 -18.13 16 20 Si 0.91 17.55 29.60 -169.99 -5.03 12.52 16 21 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 22 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 23 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 24 C -0.23 -5.53 9.73 -39.27 -0.38 -5.91 16 25 C -0.04 -1.02 9.71 -39.61 -0.38 -1.40 16 26 C 0.12 1.71 6.10 -2.19 -0.01 1.70 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.55 6.78 -51.93 -0.35 0.20 16 31 H 0.06 0.51 6.75 -51.93 -0.35 0.16 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.78 7.66 -51.93 -0.40 0.38 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.45 6.95 -51.93 -0.36 0.09 16 36 H 0.38 2.57 9.12 45.56 0.42 2.98 16 37 H 0.07 0.83 7.71 -51.93 -0.40 0.43 16 38 H 0.08 0.78 6.75 -51.93 -0.35 0.43 16 39 H 0.09 1.54 6.57 -51.93 -0.34 1.20 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.12 3.01 6.20 -52.49 -0.33 2.69 16 43 H 0.28 6.16 8.29 -40.82 -0.34 5.82 16 44 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 45 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 46 H 0.06 0.90 7.87 -51.93 -0.41 0.49 16 47 H 0.08 1.41 7.42 -51.93 -0.39 1.03 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -29.50 376.09 -9.30 -38.80 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.61 Total: 8.81 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -3.02 Total: -15.76 kcal Atomic # 7 Polarization: -29.67 SS G_CDS: 0.05 Total: -29.62 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.35 Total: -20.41 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.50 -9.30 -38.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290644404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.302 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds