Wall clock time and date at job start Tue Mar 31 2020 12:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46606 * 2 1 4 4 C 1.53001 * 109.46463 * 177.11068 * 3 2 1 5 5 C 1.53001 * 110.30613 * 57.34436 * 4 3 2 6 6 O 1.42905 * 109.47178 * 52.81035 * 5 4 3 7 7 C 1.54279 * 110.34988 * 295.16588 * 4 3 2 8 8 C 1.54382 * 104.96284 * 241.13349 * 7 4 3 9 9 N 1.48145 * 104.61646 * 336.12807 * 8 7 4 10 10 C 1.34780 * 127.83860 * 219.58165 * 9 8 7 11 11 O 1.21583 * 119.99906 * 183.34689 * 10 9 8 12 12 C 1.47641 * 119.99858 * 3.35902 * 10 9 8 13 13 C 1.40012 * 119.89790 * 68.51434 * 12 10 9 14 14 C 1.36316 * 120.10617 * 180.25764 * 13 12 10 15 15 C 1.40883 * 119.89452 * 359.48990 * 14 13 12 16 16 C 1.41103 * 120.10530 * 180.23324 * 15 14 13 17 17 H 1.08002 * 120.00027 * 154.48617 * 16 15 14 18 18 C 1.40229 * 120.00267 * 334.48532 * 16 15 14 19 19 N 1.30639 * 119.99636 * 342.67140 * 18 16 15 20 20 Si 1.86798 * 119.99874 * 162.67326 * 18 16 15 21 21 H 1.48495 * 109.47020 * 90.00253 * 20 18 16 22 22 H 1.48503 * 109.46722 * 210.00034 * 20 18 16 23 23 H 1.48493 * 109.47328 * 329.99596 * 20 18 16 24 24 C 1.40885 * 119.79104 * 0.26128 * 15 14 13 25 25 C 1.36321 * 119.89452 * 359.97438 * 24 15 14 26 26 C 1.48145 * 104.32437 * 39.84918 * 9 8 7 27 27 H 1.09001 * 109.46685 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46911 * 299.99141 * 1 2 3 29 29 H 1.08997 * 109.47260 * 60.00034 * 1 2 3 30 30 H 1.09003 * 109.46843 * 240.00288 * 2 1 3 31 31 H 1.08993 * 109.47353 * 120.00459 * 2 1 3 32 32 H 1.08992 * 109.46865 * 57.11851 * 3 2 1 33 33 H 1.08992 * 109.47210 * 297.11224 * 3 2 1 34 34 H 1.09001 * 109.47502 * 172.80723 * 5 4 3 35 35 H 1.08995 * 109.47261 * 292.80961 * 5 4 3 36 36 H 0.96699 * 114.00009 * 180.02562 * 6 5 4 37 37 H 1.08994 * 110.34649 * 122.25631 * 7 4 3 38 38 H 1.09005 * 110.42778 * 0.04525 * 7 4 3 39 39 H 1.09001 * 110.41016 * 217.34407 * 8 7 4 40 40 H 1.09001 * 110.50786 * 94.96255 * 8 7 4 41 41 H 1.07997 * 119.95046 * 0.02562 * 13 12 10 42 42 H 1.08000 * 120.05095 * 179.77728 * 14 13 12 43 43 H 0.97003 * 120.00154 * 179.97438 * 19 18 16 44 44 H 1.07999 * 120.05586 * 180.02562 * 24 15 14 45 45 H 1.07996 * 119.94795 * 180.02562 * 25 24 15 46 46 H 1.09004 * 110.40733 * 78.93243 * 26 9 8 47 47 H 1.08999 * 110.40950 * 201.37107 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5682 1.4431 0.0727 5 6 4.1557 0.6489 -1.0956 6 8 3.6148 1.1386 -2.3243 7 6 4.0416 0.8503 1.4161 8 6 4.8232 1.9914 2.1020 9 7 5.2624 2.8652 0.9892 10 6 6.4461 3.4944 0.8499 11 8 6.6350 4.2311 -0.0988 12 6 7.5135 3.2890 1.8490 13 6 8.1460 2.0439 1.9485 14 6 9.1284 1.8479 2.8731 15 6 9.5144 2.9039 3.7220 16 6 10.5342 2.7074 4.6773 17 1 11.1135 3.5481 5.0295 18 6 10.7955 1.4206 5.1694 19 7 9.9094 0.4722 5.0211 20 14 12.4106 1.0626 6.0369 21 1 12.2583 1.3183 7.4917 22 1 12.7844 -0.3583 5.8205 23 1 13.4731 1.9429 5.4881 24 6 8.8786 4.1565 3.6146 25 6 7.8939 4.3416 2.6902 26 6 4.1030 2.8958 0.0676 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6350 1.9710 0.8630 33 1 1.7195 1.9412 -0.9147 34 1 5.2396 0.7636 -1.1045 35 1 3.9028 -0.4052 -0.9819 36 1 3.9436 0.6797 -3.1094 37 1 4.6940 -0.0056 1.2437 38 1 3.1864 0.5574 2.0251 39 1 5.6861 1.5936 2.6362 40 1 4.1753 2.5416 2.7843 41 1 7.8526 1.2362 1.2943 42 1 9.6132 0.8860 2.9515 43 1 10.0902 -0.4181 5.3611 44 1 9.1714 4.9691 4.2629 45 1 7.4063 5.3016 2.6069 46 1 3.3426 3.5845 0.4361 47 1 4.4217 3.1810 -0.9349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290644404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:40 Heat of formation + Delta-G solvation = -100.220477 kcal Electronic energy + Delta-G solvation = -26809.844451 eV Core-core repulsion = 23148.578845 eV Total energy + Delta-G solvation = -3661.265606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.39111 -39.86366 -38.75305 -37.14904 -35.68295 -35.55791 -32.74457 -31.78836 -31.38081 -30.37739 -28.25207 -27.09983 -26.59308 -24.22877 -23.30243 -22.85399 -22.37962 -20.48249 -19.77180 -19.33940 -18.37724 -17.85465 -17.38891 -17.07232 -16.83288 -16.30345 -15.86249 -15.77274 -15.22099 -15.06961 -14.85946 -14.49822 -14.24456 -14.04791 -14.01038 -13.85431 -13.70204 -13.43160 -13.12400 -13.03040 -12.92429 -12.80989 -12.70754 -12.56982 -12.39484 -12.16077 -11.90710 -11.80435 -11.55992 -11.40169 -11.32860 -11.22453 -11.08487 -10.89013 -10.73213 -9.75646 -9.56519 -9.38049 -8.73814 -6.43289 0.67333 1.10775 1.39848 1.44560 1.54452 1.72622 2.08545 2.19092 2.66591 3.21033 3.46829 3.61284 3.64445 3.90867 4.02632 4.16811 4.23473 4.29962 4.32423 4.36360 4.40286 4.42283 4.51574 4.63869 4.69130 4.72840 4.85942 4.86990 4.93260 4.97834 5.04736 5.06753 5.08870 5.09909 5.18100 5.22134 5.29499 5.33491 5.49078 5.50432 5.58043 5.60453 5.79230 5.99774 6.00913 6.23538 6.55042 6.57331 6.82165 6.86907 6.90716 7.20821 8.22273 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019420 B = 0.003002 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.446306 B = 9326.131357 C =10021.603273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.061 4.061 5 C 0.093 3.907 6 O -0.581 6.581 7 C -0.115 4.115 8 C 0.097 3.903 9 N -0.619 5.619 10 C 0.599 3.401 11 O -0.599 6.599 12 C -0.267 4.267 13 C -0.058 4.058 14 C -0.186 4.186 15 C 0.097 3.903 16 C -0.484 4.484 17 H 0.082 0.918 18 C 0.040 3.960 19 N -0.804 5.804 20 Si 0.983 3.017 21 H -0.260 1.260 22 H -0.264 1.264 23 H -0.261 1.261 24 C -0.242 4.242 25 C -0.050 4.050 26 C 0.112 3.888 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.022 0.978 35 H 0.071 0.929 36 H 0.393 0.607 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.294 0.706 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.078 0.922 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.677 -7.302 -5.135 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.129 4.129 4 C -0.062 4.062 5 C 0.015 3.985 6 O -0.389 6.389 7 C -0.153 4.153 8 C -0.025 4.025 9 N -0.351 5.351 10 C 0.391 3.609 11 O -0.481 6.481 12 C -0.271 4.271 13 C -0.077 4.077 14 C -0.205 4.205 15 C 0.095 3.905 16 C -0.512 4.512 17 H 0.100 0.900 18 C -0.178 4.178 19 N -0.427 5.427 20 Si 0.803 3.197 21 H -0.184 1.184 22 H -0.188 1.188 23 H -0.185 1.185 24 C -0.261 4.261 25 C -0.069 4.069 26 C -0.011 4.011 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.089 0.911 36 H 0.242 0.758 37 H 0.096 0.904 38 H 0.131 0.869 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.128 0.872 43 H 0.106 0.894 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.096 0.904 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.865 -6.722 -5.173 17.115 hybrid contribution 1.215 -0.236 -0.084 1.240 sum -13.650 -6.958 -5.257 16.198 Atomic orbital electron populations 1.21749 0.95402 1.01856 1.01769 1.21551 0.96138 0.95834 1.02286 1.21475 0.90914 0.98195 1.02302 1.21572 0.97255 0.93091 0.94283 1.22162 0.95109 0.97207 0.84040 1.86419 1.71216 1.64628 1.16619 1.22647 1.00911 0.97006 0.94767 1.22552 0.99196 0.91361 0.89378 1.49058 1.13056 1.48624 1.24380 1.18283 0.81087 0.77310 0.84217 1.90651 1.82024 1.40438 1.35007 1.18952 1.05453 0.96803 1.05923 1.20370 0.96215 0.94157 0.96991 1.20903 1.01740 1.00167 0.97681 1.18037 0.90383 0.91536 0.90591 1.19987 1.15517 0.94989 1.20661 0.90007 1.26823 1.00795 0.94881 0.95343 1.69750 1.34219 1.04070 1.34708 0.85184 0.77120 0.78638 0.78754 1.18438 1.18770 1.18469 1.20825 1.02094 0.98893 1.04313 1.20332 0.96275 0.96119 0.94134 1.22542 0.87025 0.97624 0.93867 0.92271 0.92475 0.93156 0.92116 0.91133 0.91046 0.91949 0.96006 0.91055 0.75755 0.90433 0.86923 0.91029 0.89905 0.87900 0.87172 0.89442 0.87601 0.87936 0.90390 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 71.98 0.71 -1.15 16 2 C -0.12 -1.67 5.29 30.60 0.16 -1.51 16 3 C -0.09 -1.55 3.76 30.59 0.11 -1.44 16 4 C -0.06 -1.30 0.58 -51.13 -0.03 -1.32 16 5 C 0.09 1.94 5.05 71.98 0.36 2.30 16 6 O -0.58 -11.91 12.50 -148.98 -1.86 -13.77 16 7 C -0.12 -2.33 5.74 31.50 0.18 -2.14 16 8 C 0.10 2.72 6.91 86.53 0.60 3.32 16 9 N -0.62 -21.52 3.31 -810.77 -2.69 -24.21 16 10 C 0.60 26.53 7.30 86.73 0.63 27.16 16 11 O -0.60 -30.48 17.39 -3.98 -0.07 -30.54 16 12 C -0.27 -12.45 4.85 -19.93 -0.10 -12.55 16 13 C -0.06 -2.72 8.68 22.25 0.19 -2.52 16 14 C -0.19 -9.42 8.63 22.47 0.19 -9.22 16 15 C 0.10 5.11 5.57 -21.28 -0.12 4.99 16 16 C -0.48 -24.79 9.04 23.46 0.21 -24.58 16 17 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 18 C 0.04 1.87 5.14 85.35 0.44 2.31 16 19 N -0.80 -38.62 10.98 21.87 0.24 -38.38 16 20 Si 0.98 35.48 29.60 68.60 2.03 37.51 16 21 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 22 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 23 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 24 C -0.24 -11.93 9.73 22.47 0.22 -11.71 16 25 C -0.05 -2.35 9.71 22.25 0.22 -2.13 16 26 C 0.11 3.24 6.10 86.68 0.53 3.76 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.88 6.78 -2.39 -0.02 0.86 16 31 H 0.07 0.88 6.75 -2.39 -0.02 0.86 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.22 7.66 -2.39 -0.02 1.20 16 34 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 1.17 6.95 -2.39 -0.02 1.15 16 36 H 0.39 4.85 9.12 -74.06 -0.68 4.17 16 37 H 0.08 1.55 7.71 -2.39 -0.02 1.53 16 38 H 0.11 1.66 6.75 -2.38 -0.02 1.65 16 39 H 0.07 2.34 6.57 -2.39 -0.02 2.32 16 40 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.10 4.35 8.06 -2.91 -0.02 4.33 16 42 H 0.11 5.71 6.20 -2.91 -0.02 5.70 16 43 H 0.29 12.60 8.29 -92.71 -0.77 11.83 16 44 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 45 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 46 H 0.08 2.06 7.87 -2.39 -0.02 2.04 16 47 H 0.06 2.04 7.42 -2.39 -0.02 2.02 16 Total: -1.00 -65.02 376.09 2.47 -62.55 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.29 Total: 33.29 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 4.52 Total: -26.44 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -2.44 Total: -62.59 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -1.93 Total: -44.31 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 2.03 Total: 37.51 kcal Total: -65.02 2.47 -62.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290644404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.675 kcal (2) G-P(sol) polarization free energy of solvation -65.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds