Wall clock time and date at job start Tue Mar 31 2020 12:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47046 * 2 1 4 4 C 1.52997 * 109.47459 * 185.22185 * 3 2 1 5 5 C 1.52995 * 110.30512 * 300.23926 * 4 3 2 6 6 O 1.42896 * 109.47397 * 303.08193 * 5 4 3 7 7 C 1.54284 * 110.33980 * 62.41371 * 4 3 2 8 8 C 1.54385 * 104.95981 * 118.97650 * 7 4 3 9 9 N 1.48147 * 104.72345 * 336.07439 * 8 7 4 10 10 C 1.34772 * 127.83695 * 219.64810 * 9 8 7 11 11 O 1.21588 * 120.00472 * 5.35931 * 10 9 8 12 12 C 1.47646 * 119.99883 * 185.36107 * 10 9 8 13 13 C 1.40011 * 119.89330 * 19.27352 * 12 10 9 14 14 C 1.36313 * 120.10678 * 179.76127 * 13 12 10 15 15 C 1.40884 * 119.88991 * 0.50591 * 14 13 12 16 16 C 1.41115 * 120.10533 * 179.72095 * 15 14 13 17 17 H 1.07992 * 120.00307 * 154.86475 * 16 15 14 18 18 C 1.40230 * 119.99743 * 334.86173 * 16 15 14 19 19 N 1.30646 * 119.99893 * 332.82811 * 18 16 15 20 20 Si 1.86793 * 120.00025 * 152.82922 * 18 16 15 21 21 H 1.48502 * 109.47450 * 94.97867 * 20 18 16 22 22 H 1.48502 * 109.47314 * 214.97842 * 20 18 16 23 23 H 1.48502 * 109.47267 * 334.97924 * 20 18 16 24 24 C 1.40883 * 119.79841 * 359.74644 * 15 14 13 25 25 C 1.36324 * 119.88772 * 359.97438 * 24 15 14 26 26 C 1.48431 * 104.17672 * 39.57016 * 9 8 7 27 27 H 1.09001 * 109.47331 * 60.00734 * 1 2 3 28 28 H 1.09006 * 109.47060 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47711 * 299.99752 * 1 2 3 30 30 H 1.08996 * 109.47711 * 240.00248 * 2 1 3 31 31 H 1.09001 * 109.47331 * 119.99265 * 2 1 3 32 32 H 1.09007 * 109.46943 * 65.22127 * 3 2 1 33 33 H 1.08998 * 109.47329 * 305.22764 * 3 2 1 34 34 H 1.09002 * 109.47357 * 63.08323 * 5 4 3 35 35 H 1.09000 * 109.47028 * 183.08138 * 5 4 3 36 36 H 0.96700 * 114.00352 * 179.97438 * 6 5 4 37 37 H 1.08996 * 110.34271 * 0.10564 * 7 4 3 38 38 H 1.09000 * 110.43220 * 237.89032 * 7 4 3 39 39 H 1.09003 * 110.40999 * 94.91764 * 8 7 4 40 40 H 1.09002 * 110.40585 * 217.23057 * 8 7 4 41 41 H 1.08007 * 119.94805 * 0.02562 * 13 12 10 42 42 H 1.08001 * 120.05479 * 180.22564 * 14 13 12 43 43 H 0.96999 * 119.99972 * 180.02562 * 19 18 16 44 44 H 1.07994 * 120.05920 * 180.02562 * 24 15 14 45 45 H 1.07996 * 119.94660 * 179.97438 * 25 24 15 46 46 H 1.09002 * 110.38627 * 201.64790 * 26 9 8 47 47 H 1.09004 * 110.48866 * 79.29430 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5643 1.4447 -0.1313 5 6 4.1987 0.6855 1.0357 6 8 3.7779 1.2705 2.2696 7 6 3.9877 0.8147 -1.4745 8 6 4.7409 1.9367 -2.2210 9 7 4.2240 3.1938 -1.6318 10 6 3.9330 4.3462 -2.2673 11 8 3.9969 4.4047 -3.4800 12 6 3.5366 5.5376 -1.4906 13 6 3.8414 5.6144 -0.1263 14 6 3.4818 6.7145 0.5939 15 6 2.7929 7.7706 -0.0346 16 6 2.4132 8.9090 0.7079 17 1 2.2678 9.8555 0.2087 18 6 2.2247 8.8112 2.0940 19 7 1.8738 7.6710 2.6266 20 14 2.4752 10.3111 3.1788 21 1 1.1698 10.9817 3.4055 22 1 3.0478 9.8891 4.4824 23 1 3.4072 11.2549 2.5111 24 6 2.4837 7.6866 -1.4065 25 6 2.8525 6.5848 -2.1197 26 6 4.0987 2.8921 -0.1839 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.7549 1.9287 0.9331 33 1 1.6022 1.9827 -0.8394 34 1 3.8860 -0.3582 1.0032 35 1 5.2845 0.7420 0.9585 36 1 4.1422 0.8385 3.0543 37 1 3.1097 0.5055 -2.0415 38 1 4.6472 -0.0363 -1.3045 39 1 5.8144 1.8512 -2.0524 40 1 4.5203 1.8980 -3.2878 41 1 4.3661 4.8026 0.3555 42 1 3.7205 6.7745 1.6454 43 1 1.7430 7.6034 3.5854 44 1 1.9561 8.4938 -1.8926 45 1 2.6156 6.5192 -3.1713 46 1 3.3919 3.5756 0.2866 47 1 5.0710 2.9563 0.3047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290644407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:47 Heat of formation + Delta-G solvation = -90.594727 kcal Electronic energy + Delta-G solvation = -27300.231860 eV Core-core repulsion = 23639.383658 eV Total energy + Delta-G solvation = -3660.848202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.45272 -39.78395 -38.74671 -37.05742 -35.73327 -35.55951 -32.95253 -31.95912 -31.43736 -30.29673 -27.89344 -27.25493 -26.70290 -24.46046 -23.04849 -22.88677 -22.47431 -20.61043 -19.78296 -19.33571 -18.24201 -17.86494 -17.33403 -16.92237 -16.76229 -16.18139 -16.05687 -15.74370 -15.27121 -15.01821 -14.79400 -14.56510 -14.22512 -14.07056 -13.99425 -13.98114 -13.64803 -13.43373 -13.34323 -13.06999 -12.94870 -12.76278 -12.66758 -12.40807 -12.29586 -12.19456 -12.01624 -11.81626 -11.54922 -11.45877 -11.20897 -11.19619 -11.01371 -10.81570 -10.57669 -9.75545 -9.57909 -9.43048 -8.87721 -6.47367 0.45519 1.11022 1.35606 1.41213 1.54574 2.03573 2.11984 2.16855 2.69338 3.24499 3.55101 3.61235 3.69420 3.87446 4.07439 4.19836 4.24835 4.29468 4.33786 4.37594 4.39805 4.44803 4.51159 4.59539 4.73578 4.74432 4.82890 4.85542 4.90842 4.94285 5.00206 5.01995 5.03327 5.08446 5.15540 5.20998 5.25917 5.31552 5.40350 5.50528 5.52717 5.57749 5.79775 5.92059 5.98754 6.19066 6.49831 6.61943 6.73629 6.86770 7.06468 7.34435 8.10323 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012809 B = 0.003973 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.435250 B = 7046.069821 C = 8123.443031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.097 4.097 4 C -0.067 4.067 5 C 0.094 3.906 6 O -0.590 6.590 7 C -0.112 4.112 8 C 0.097 3.903 9 N -0.627 5.627 10 C 0.589 3.411 11 O -0.608 6.608 12 C -0.297 4.297 13 C -0.061 4.061 14 C -0.203 4.203 15 C 0.106 3.894 16 C -0.480 4.480 17 H 0.087 0.913 18 C 0.047 3.953 19 N -0.787 5.787 20 Si 0.981 3.019 21 H -0.258 1.258 22 H -0.260 1.260 23 H -0.257 1.257 24 C -0.254 4.254 25 C -0.032 4.032 26 C 0.106 3.894 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.395 0.605 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.299 0.701 44 H 0.105 0.895 45 H 0.100 0.900 46 H 0.071 0.929 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.814 -17.102 4.309 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.135 4.135 4 C -0.068 4.068 5 C 0.016 3.984 6 O -0.398 6.398 7 C -0.149 4.149 8 C -0.025 4.025 9 N -0.359 5.359 10 C 0.385 3.615 11 O -0.494 6.494 12 C -0.301 4.301 13 C -0.079 4.079 14 C -0.223 4.223 15 C 0.103 3.897 16 C -0.506 4.506 17 H 0.105 0.895 18 C -0.175 4.175 19 N -0.409 5.409 20 Si 0.800 3.200 21 H -0.183 1.183 22 H -0.184 1.184 23 H -0.181 1.181 24 C -0.274 4.274 25 C -0.051 4.051 26 C -0.017 4.017 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.245 0.755 37 H 0.096 0.904 38 H 0.136 0.864 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.147 0.853 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.123 0.877 45 H 0.118 0.882 46 H 0.089 0.911 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.424 -16.742 3.441 17.431 hybrid contribution 0.020 0.731 0.568 0.926 sum 3.444 -16.011 4.009 16.861 Atomic orbital electron populations 1.21785 0.96313 1.02029 1.01067 1.21537 0.95550 0.95153 1.02859 1.21482 0.93631 0.98065 1.00326 1.21564 0.95967 0.93688 0.95584 1.22260 0.97616 0.95936 0.82569 1.86532 1.75239 1.61472 1.16576 1.22614 1.01294 0.97478 0.93563 1.22499 0.98868 0.82478 0.98674 1.48845 1.65386 1.11744 1.09961 1.18101 0.75110 0.82296 0.85995 1.90600 1.57829 1.85361 1.15571 1.19083 1.18385 0.97712 0.94957 1.21196 0.97243 0.97194 0.92313 1.20780 1.05625 0.96568 0.99282 1.18064 0.87292 0.92500 0.91884 1.20066 1.40410 0.96771 0.93351 0.89500 1.26919 0.90353 1.00611 0.99597 1.69805 1.26746 1.28923 1.15445 0.85210 0.80011 0.77563 0.77180 1.18260 1.18375 1.18088 1.20819 1.10830 0.99907 0.95798 1.20470 0.94334 0.92684 0.97647 1.22909 1.01238 0.96746 0.80781 0.93958 0.91172 0.93613 0.90707 0.90572 0.93081 0.95006 0.90660 0.91920 0.75506 0.90360 0.86421 0.89627 0.91531 0.85276 0.88001 0.88931 0.87721 0.88177 0.91091 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.91 71.98 0.71 -2.33 16 2 C -0.11 -2.13 5.28 30.59 0.16 -1.97 16 3 C -0.10 -2.53 3.87 30.60 0.12 -2.41 16 4 C -0.07 -1.51 0.57 -51.28 -0.03 -1.54 16 5 C 0.09 1.48 5.19 71.98 0.37 1.85 16 6 O -0.59 -11.40 12.74 -148.98 -1.90 -13.29 16 7 C -0.11 -2.10 5.70 31.50 0.18 -1.92 16 8 C 0.10 2.55 7.06 86.53 0.61 3.16 16 9 N -0.63 -22.54 3.32 -810.81 -2.70 -25.24 16 10 C 0.59 27.27 7.75 86.73 0.67 27.94 16 11 O -0.61 -31.29 16.74 -3.99 -0.07 -31.36 16 12 C -0.30 -14.74 5.81 -19.93 -0.12 -14.85 16 13 C -0.06 -2.91 7.97 22.25 0.18 -2.74 16 14 C -0.20 -10.57 8.68 22.47 0.20 -10.38 16 15 C 0.11 5.73 5.54 -21.28 -0.12 5.61 16 16 C -0.48 -24.96 8.98 23.46 0.21 -24.75 16 17 H 0.09 4.34 7.98 -2.91 -0.02 4.32 16 18 C 0.05 2.21 4.89 85.35 0.42 2.63 16 19 N -0.79 -38.60 11.61 21.87 0.25 -38.34 16 20 Si 0.98 35.26 29.64 68.60 2.03 37.29 16 21 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 22 H -0.26 -8.76 7.11 99.48 0.71 -8.06 16 23 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 24 C -0.25 -13.26 9.73 22.47 0.22 -13.05 16 25 C -0.03 -1.65 9.52 22.25 0.21 -1.44 16 26 C 0.11 3.25 4.00 86.48 0.35 3.59 16 27 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.19 6.53 -2.39 -0.02 1.17 16 31 H 0.08 1.21 6.86 -2.39 -0.02 1.20 16 32 H 0.05 1.56 7.67 -2.38 -0.02 1.54 16 33 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 0.82 6.80 -2.39 -0.02 0.80 16 35 H 0.06 0.80 8.08 -2.39 -0.02 0.78 16 36 H 0.40 3.82 9.12 -74.06 -0.68 3.14 16 37 H 0.08 1.51 6.60 -2.39 -0.02 1.50 16 38 H 0.12 1.29 7.72 -2.39 -0.02 1.27 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.07 1.94 7.84 -2.39 -0.02 1.92 16 41 H 0.13 5.41 4.52 -2.91 -0.01 5.40 16 42 H 0.10 5.32 6.55 -2.91 -0.02 5.30 16 43 H 0.30 12.95 8.29 -92.71 -0.77 12.18 16 44 H 0.10 5.12 8.06 -2.91 -0.02 5.09 16 45 H 0.10 4.96 7.76 -2.91 -0.02 4.94 16 46 H 0.07 2.69 5.20 -2.39 -0.01 2.67 16 47 H 0.08 2.24 7.57 -2.39 -0.02 2.22 16 Total: -1.00 -69.34 369.67 2.28 -67.06 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: 0.31 Total: 36.47 kcal Atomic # 6 Polarization: -36.92 SS G_CDS: 4.34 Total: -32.58 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -2.44 Total: -63.58 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -1.96 Total: -44.66 kcal Atomic # 14 Polarization: 35.26 SS G_CDS: 2.03 Total: 37.29 kcal Total: -69.34 2.28 -67.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290644407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.536 kcal (2) G-P(sol) polarization free energy of solvation -69.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds