Wall clock time and date at job start Tue Mar 31 2020 12:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47351 * 2 1 4 4 C 1.53003 * 109.47428 * 184.81236 * 3 2 1 5 5 C 1.52997 * 110.30531 * 305.36195 * 4 3 2 6 6 O 1.42903 * 109.47117 * 303.15308 * 5 4 3 7 7 C 1.54290 * 110.43065 * 67.59718 * 4 3 2 8 8 C 1.54784 * 104.91899 * 118.72802 * 7 4 3 9 9 N 1.48136 * 104.42093 * 24.16302 * 8 7 4 10 10 C 1.34780 * 127.83803 * 140.36934 * 9 8 7 11 11 O 1.21550 * 119.99659 * 185.78127 * 10 9 8 12 12 C 1.47882 * 120.00066 * 5.50569 * 10 9 8 13 13 C 1.39924 * 120.02334 * 22.68500 * 12 10 9 14 14 C 1.38335 * 120.35364 * 179.78424 * 13 12 10 15 15 C 1.37747 * 120.41419 * 0.47066 * 14 13 12 16 16 C 1.40749 * 120.03646 * 359.78840 * 15 14 13 17 17 C 1.41441 * 120.17231 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00452 * 330.91139 * 17 16 15 19 19 C 1.39940 * 119.99838 * 150.90499 * 17 16 15 20 20 N 1.30833 * 119.99898 * 348.98888 * 19 17 16 21 21 Si 1.86793 * 120.00111 * 168.98233 * 19 17 16 22 22 H 1.48504 * 109.47321 * 90.00472 * 21 19 17 23 23 H 1.48505 * 109.47398 * 210.00369 * 21 19 17 24 24 H 1.48503 * 109.47099 * 330.00255 * 21 19 17 25 25 C 1.38987 * 120.02494 * 202.96070 * 12 10 9 26 26 C 1.48146 * 104.32507 * 320.10658 * 9 8 7 27 27 H 1.08998 * 109.46659 * 300.00165 * 1 2 3 28 28 H 1.09001 * 109.46978 * 59.99487 * 1 2 3 29 29 H 1.08998 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47147 * 240.00043 * 2 1 3 31 31 H 1.09002 * 109.47440 * 120.00257 * 2 1 3 32 32 H 1.09000 * 109.47338 * 64.81217 * 3 2 1 33 33 H 1.09002 * 109.46991 * 304.81395 * 3 2 1 34 34 H 1.09003 * 109.47077 * 63.14922 * 5 4 3 35 35 H 1.08996 * 109.47222 * 183.14986 * 5 4 3 36 36 H 0.96703 * 114.00030 * 179.97438 * 6 5 4 37 37 H 1.09005 * 110.33811 * 237.78916 * 7 4 3 38 38 H 1.08999 * 110.34173 * 0.04166 * 7 4 3 39 39 H 1.09007 * 110.53814 * 265.42343 * 8 7 4 40 40 H 1.09000 * 110.46594 * 142.86728 * 8 7 4 41 41 H 1.07997 * 119.82190 * 0.03153 * 13 12 10 42 42 H 1.08003 * 119.78542 * 180.21836 * 14 13 12 43 43 H 1.08004 * 119.97994 * 179.76147 * 15 14 13 44 44 H 0.96998 * 119.99483 * 180.02562 * 20 19 17 45 45 H 1.08003 * 120.20613 * 359.95510 * 25 12 10 46 46 H 1.09003 * 110.41120 * 158.62608 * 26 9 8 47 47 H 1.09001 * 110.40842 * 280.94504 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5653 1.4442 -0.1210 5 6 4.1862 0.5819 0.9798 6 8 3.7596 1.0602 2.2571 7 6 3.9958 0.9313 -1.5110 8 6 4.7589 2.1148 -2.1537 9 7 5.2371 2.9144 -1.0019 10 6 6.4271 3.5314 -0.8610 11 8 6.7137 4.0653 0.1927 12 6 7.3864 3.5536 -1.9862 13 6 6.9308 3.3819 -3.2981 14 6 7.8216 3.4059 -4.3562 15 6 9.1680 3.5893 -4.1302 16 6 9.6454 3.7583 -2.8170 17 6 11.0274 3.9463 -2.5816 18 1 11.7533 3.5179 -3.2567 19 6 11.4540 4.6875 -1.4740 20 7 10.5901 5.3839 -0.7808 21 14 13.2568 4.6824 -0.9849 22 1 13.9622 5.7871 -1.6830 23 1 13.3719 4.8714 0.4836 24 1 13.8695 3.3845 -1.3664 25 6 8.7418 3.7392 -1.7410 26 6 4.1083 2.8873 -0.0429 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.7488 1.9308 0.9299 33 1 1.6080 1.9806 -0.8437 34 1 3.8672 -0.4528 0.8543 35 1 5.2728 0.6375 0.9154 36 1 4.1154 0.5590 3.0036 37 1 4.6497 0.0651 -1.4094 38 1 3.1206 0.6783 -2.1094 39 1 4.0895 2.7083 -2.7766 40 1 5.6024 1.7509 -2.7402 41 1 5.8777 3.2339 -3.4859 42 1 7.4596 3.2759 -5.3654 43 1 9.8578 3.6030 -4.9612 44 1 10.8860 5.8979 -0.0133 45 1 9.0983 3.8684 -0.7298 46 1 4.4604 3.1068 0.9650 47 1 3.3399 3.6010 -0.3401 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290741915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:03 Heat of formation + Delta-G solvation = -71.315171 kcal Electronic energy + Delta-G solvation = -26971.643639 eV Core-core repulsion = 23311.631461 eV Total energy + Delta-G solvation = -3660.012178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -40.18668 -38.38292 -36.88800 -36.08455 -34.77715 -33.67659 -31.68022 -30.07142 -29.45356 -29.22888 -26.36645 -26.16902 -25.21127 -23.36552 -22.16423 -21.21508 -20.87473 -19.08726 -18.73236 -17.58454 -17.16268 -16.16477 -15.83270 -15.53779 -15.44297 -14.86994 -14.78118 -14.35200 -14.25816 -13.60161 -13.46912 -13.30156 -12.97359 -12.87300 -12.67082 -12.60206 -12.29568 -12.09264 -11.91870 -11.65695 -11.64237 -11.37193 -11.23531 -11.11770 -10.98797 -10.76243 -10.62580 -10.55062 -10.41378 -10.30329 -10.01073 -9.93340 -9.64511 -9.23977 -8.96215 -8.30564 -7.61144 -7.45118 -6.71618 -4.41583 2.25342 2.81883 3.08858 3.11831 3.15313 3.45145 3.79852 3.94492 4.07134 4.48109 4.58167 4.66264 4.71034 4.93427 5.03491 5.08095 5.22820 5.31167 5.34167 5.43697 5.50860 5.57687 5.63161 5.67800 5.69430 5.75249 5.87090 5.88811 5.90537 6.02832 6.06713 6.08819 6.13826 6.23821 6.29556 6.33662 6.60120 6.77336 7.00903 7.04782 7.23937 7.39608 7.55234 7.69267 7.81064 7.92869 8.11522 8.19038 8.51930 8.83265 8.84299 8.94421 10.22360 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021552 B = 0.003133 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.856973 B = 8935.876979 C = 9735.376217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.099 4.099 4 C -0.069 4.069 5 C 0.090 3.910 6 O -0.568 6.568 7 C -0.128 4.128 8 C 0.095 3.905 9 N -0.626 5.626 10 C 0.584 3.416 11 O -0.541 6.541 12 C -0.124 4.124 13 C -0.222 4.222 14 C -0.102 4.102 15 C -0.207 4.207 16 C 0.099 3.901 17 C -0.463 4.463 18 H 0.080 0.920 19 C 0.070 3.930 20 N -0.791 5.791 21 Si 0.912 3.088 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.089 4.089 26 C 0.116 3.884 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.377 0.623 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.283 0.717 45 H 0.132 0.868 46 H 0.087 0.913 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.147 -10.715 1.033 18.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.136 4.136 4 C -0.070 4.070 5 C 0.012 3.988 6 O -0.373 6.373 7 C -0.166 4.166 8 C -0.028 4.028 9 N -0.361 5.361 10 C 0.377 3.623 11 O -0.418 6.418 12 C -0.128 4.128 13 C -0.241 4.241 14 C -0.121 4.121 15 C -0.226 4.226 16 C 0.097 3.903 17 C -0.493 4.493 18 H 0.098 0.902 19 C -0.148 4.148 20 N -0.416 5.416 21 Si 0.736 3.264 22 H -0.195 1.195 23 H -0.201 1.201 24 H -0.185 1.185 25 C -0.109 4.109 26 C -0.007 4.007 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.223 0.777 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.150 0.850 46 H 0.105 0.895 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.191 -9.747 1.457 18.108 hybrid contribution 1.027 -0.263 0.479 1.163 sum -14.164 -10.010 1.936 17.452 Atomic orbital electron populations 1.21765 0.96080 1.01295 1.01741 1.21578 0.95563 0.97074 1.01927 1.21539 0.92714 0.96964 1.02427 1.21510 0.95830 0.95637 0.94002 1.22219 0.97652 0.95821 0.83114 1.86457 1.74891 1.60495 1.15487 1.22776 1.00471 0.98585 0.94765 1.22785 0.98942 0.91421 0.89653 1.48870 1.14667 1.53258 1.19342 1.18600 0.79267 0.76445 0.87991 1.90724 1.75963 1.45971 1.29150 1.19426 0.93843 1.07765 0.91726 1.20820 0.98109 1.13158 0.92056 1.20471 0.93837 1.01203 0.96563 1.21168 0.94256 1.10998 0.96224 1.17597 0.93572 0.88884 0.90269 1.19548 0.92101 1.29250 1.08376 0.90234 1.25952 1.00122 0.93550 0.95150 1.69775 1.36159 1.20448 1.15180 0.86257 0.82112 0.79675 0.78357 1.19474 1.20062 1.18532 1.21621 0.89993 0.98745 1.00569 1.22246 0.88302 0.94653 0.95454 0.92807 0.92858 0.93050 0.92059 0.91887 0.91016 0.91875 0.93480 0.93461 0.77676 0.90845 0.90002 0.91455 0.88176 0.87803 0.88889 0.88613 0.90537 0.85031 0.89467 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -1.01 5.18 -26.73 -0.14 -1.15 16 3 C -0.10 -0.95 3.76 -26.73 -0.10 -1.05 16 4 C -0.07 -0.79 0.57 -153.11 -0.09 -0.87 16 5 C 0.09 1.01 5.09 37.16 0.19 1.20 16 6 O -0.57 -6.44 12.48 -35.23 -0.44 -6.88 16 7 C -0.13 -1.35 5.76 -25.12 -0.14 -1.50 16 8 C 0.10 1.29 5.09 -2.20 -0.01 1.28 16 9 N -0.63 -11.08 3.31 -170.16 -0.56 -11.64 16 10 C 0.58 13.40 7.72 -12.31 -0.10 13.30 16 11 O -0.54 -14.34 16.81 5.32 0.09 -14.25 16 12 C -0.12 -2.99 5.73 -105.04 -0.60 -3.59 16 13 C -0.22 -4.67 7.97 -38.91 -0.31 -4.98 16 14 C -0.10 -2.17 10.01 -39.73 -0.40 -2.57 16 15 C -0.21 -4.90 9.78 -38.81 -0.38 -5.28 16 16 C 0.10 2.64 5.54 -106.87 -0.59 2.04 16 17 C -0.46 -12.26 9.06 -37.73 -0.34 -12.60 16 18 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 19 C 0.07 1.80 5.24 -17.34 -0.09 1.71 16 20 N -0.79 -21.45 10.88 55.55 0.60 -20.85 16 21 Si 0.91 19.04 29.57 -169.99 -5.03 14.01 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 25 C -0.09 -2.40 8.19 -38.45 -0.31 -2.72 16 26 C 0.12 1.76 6.08 -2.41 -0.01 1.75 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.47 6.91 -51.93 -0.36 0.11 16 31 H 0.06 0.54 6.78 -51.93 -0.35 0.19 16 32 H 0.07 0.77 7.83 -51.93 -0.41 0.36 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.44 6.73 -51.93 -0.35 0.09 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.38 2.76 9.12 45.56 0.42 3.17 16 37 H 0.07 0.76 7.71 -51.93 -0.40 0.36 16 38 H 0.08 0.69 6.96 -51.93 -0.36 0.33 16 39 H 0.07 0.82 7.86 -51.93 -0.41 0.41 16 40 H 0.10 1.46 5.70 -51.93 -0.30 1.17 16 41 H 0.10 1.85 4.87 -52.49 -0.26 1.59 16 42 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 43 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 44 H 0.28 7.11 8.30 -40.82 -0.34 6.77 16 45 H 0.13 3.85 6.00 -52.48 -0.31 3.54 16 46 H 0.09 1.53 7.17 -51.93 -0.37 1.16 16 47 H 0.06 0.90 7.87 -51.93 -0.41 0.50 16 LS Contribution 369.56 15.07 5.57 5.57 Total: -1.00 -31.50 369.56 -9.21 -40.71 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -6.38 Total: 9.09 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -3.06 Total: -15.76 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.04 Total: -32.49 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.35 Total: -21.13 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.50 -9.21 -40.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290741915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.607 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds