Wall clock time and date at job start Tue Mar 31 2020 12:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47351 * 2 1 4 4 C 1.53003 * 109.47428 * 184.81236 * 3 2 1 5 5 C 1.52997 * 110.30531 * 305.36195 * 4 3 2 6 6 O 1.42903 * 109.47117 * 303.15308 * 5 4 3 7 7 C 1.54290 * 110.43065 * 67.59718 * 4 3 2 8 8 C 1.54784 * 104.91899 * 118.72802 * 7 4 3 9 9 N 1.48136 * 104.42093 * 24.16302 * 8 7 4 10 10 C 1.34780 * 127.83803 * 140.36934 * 9 8 7 11 11 O 1.21550 * 119.99659 * 185.78127 * 10 9 8 12 12 C 1.47882 * 120.00066 * 5.50569 * 10 9 8 13 13 C 1.39924 * 120.02334 * 22.68500 * 12 10 9 14 14 C 1.38335 * 120.35364 * 179.78424 * 13 12 10 15 15 C 1.37747 * 120.41419 * 0.47066 * 14 13 12 16 16 C 1.40749 * 120.03646 * 359.78840 * 15 14 13 17 17 C 1.41441 * 120.17231 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00452 * 330.91139 * 17 16 15 19 19 C 1.39940 * 119.99838 * 150.90499 * 17 16 15 20 20 N 1.30833 * 119.99898 * 348.98888 * 19 17 16 21 21 Si 1.86793 * 120.00111 * 168.98233 * 19 17 16 22 22 H 1.48504 * 109.47321 * 90.00472 * 21 19 17 23 23 H 1.48505 * 109.47398 * 210.00369 * 21 19 17 24 24 H 1.48503 * 109.47099 * 330.00255 * 21 19 17 25 25 C 1.38987 * 120.02494 * 202.96070 * 12 10 9 26 26 C 1.48146 * 104.32507 * 320.10658 * 9 8 7 27 27 H 1.08998 * 109.46659 * 300.00165 * 1 2 3 28 28 H 1.09001 * 109.46978 * 59.99487 * 1 2 3 29 29 H 1.08998 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47147 * 240.00043 * 2 1 3 31 31 H 1.09002 * 109.47440 * 120.00257 * 2 1 3 32 32 H 1.09000 * 109.47338 * 64.81217 * 3 2 1 33 33 H 1.09002 * 109.46991 * 304.81395 * 3 2 1 34 34 H 1.09003 * 109.47077 * 63.14922 * 5 4 3 35 35 H 1.08996 * 109.47222 * 183.14986 * 5 4 3 36 36 H 0.96703 * 114.00030 * 179.97438 * 6 5 4 37 37 H 1.09005 * 110.33811 * 237.78916 * 7 4 3 38 38 H 1.08999 * 110.34173 * 0.04166 * 7 4 3 39 39 H 1.09007 * 110.53814 * 265.42343 * 8 7 4 40 40 H 1.09000 * 110.46594 * 142.86728 * 8 7 4 41 41 H 1.07997 * 119.82190 * 0.03153 * 13 12 10 42 42 H 1.08003 * 119.78542 * 180.21836 * 14 13 12 43 43 H 1.08004 * 119.97994 * 179.76147 * 15 14 13 44 44 H 0.96998 * 119.99483 * 180.02562 * 20 19 17 45 45 H 1.08003 * 120.20613 * 359.95510 * 25 12 10 46 46 H 1.09003 * 110.41120 * 158.62608 * 26 9 8 47 47 H 1.09001 * 110.40842 * 280.94504 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5653 1.4442 -0.1210 5 6 4.1862 0.5819 0.9798 6 8 3.7596 1.0602 2.2571 7 6 3.9958 0.9313 -1.5110 8 6 4.7589 2.1148 -2.1537 9 7 5.2371 2.9144 -1.0019 10 6 6.4271 3.5314 -0.8610 11 8 6.7137 4.0653 0.1927 12 6 7.3864 3.5536 -1.9862 13 6 6.9308 3.3819 -3.2981 14 6 7.8216 3.4059 -4.3562 15 6 9.1680 3.5893 -4.1302 16 6 9.6454 3.7583 -2.8170 17 6 11.0274 3.9463 -2.5816 18 1 11.7533 3.5179 -3.2567 19 6 11.4540 4.6875 -1.4740 20 7 10.5901 5.3839 -0.7808 21 14 13.2568 4.6824 -0.9849 22 1 13.9622 5.7871 -1.6830 23 1 13.3719 4.8714 0.4836 24 1 13.8695 3.3845 -1.3664 25 6 8.7418 3.7392 -1.7410 26 6 4.1083 2.8873 -0.0429 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.7488 1.9308 0.9299 33 1 1.6080 1.9806 -0.8437 34 1 3.8672 -0.4528 0.8543 35 1 5.2728 0.6375 0.9154 36 1 4.1154 0.5590 3.0036 37 1 4.6497 0.0651 -1.4094 38 1 3.1206 0.6783 -2.1094 39 1 4.0895 2.7083 -2.7766 40 1 5.6024 1.7509 -2.7402 41 1 5.8777 3.2339 -3.4859 42 1 7.4596 3.2759 -5.3654 43 1 9.8578 3.6030 -4.9612 44 1 10.8860 5.8979 -0.0133 45 1 9.0983 3.8684 -0.7298 46 1 4.4604 3.1068 0.9650 47 1 3.3399 3.6010 -0.3401 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290741915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:58 Heat of formation + Delta-G solvation = -91.862230 kcal Electronic energy + Delta-G solvation = -26972.534626 eV Core-core repulsion = 23311.631461 eV Total energy + Delta-G solvation = -3660.903165 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -41.50204 -39.85467 -38.66408 -37.21098 -35.79239 -35.44815 -32.90290 -31.70626 -31.28665 -30.35679 -27.65536 -27.10318 -26.94747 -24.62461 -23.41474 -22.68083 -22.31284 -20.58504 -19.87659 -19.19054 -18.22805 -17.55129 -17.31357 -17.15095 -16.53546 -16.45924 -16.24491 -15.70264 -15.23559 -15.05072 -14.95983 -14.52725 -14.34000 -14.15698 -14.07715 -13.82846 -13.53202 -13.34713 -13.14802 -13.03116 -12.82888 -12.74226 -12.55330 -12.54056 -12.22055 -12.14521 -11.93189 -11.81498 -11.55727 -11.41589 -11.29810 -11.23252 -11.11048 -10.86251 -10.72804 -9.81593 -9.43819 -9.33535 -8.61155 -6.41358 0.39632 0.99519 1.34882 1.45052 1.50665 1.95718 2.04732 2.19030 2.77263 3.19806 3.47557 3.61187 3.66094 3.89976 3.94193 4.15883 4.24857 4.30172 4.36741 4.42166 4.46655 4.50457 4.60672 4.64498 4.69308 4.71736 4.84253 4.85677 4.90269 4.99251 5.06032 5.07909 5.09051 5.11071 5.19252 5.23116 5.29606 5.35864 5.49251 5.51084 5.53585 5.58338 5.84821 5.93752 6.04400 6.28396 6.48366 6.63051 6.83897 6.88118 6.94088 7.21082 8.34509 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021552 B = 0.003133 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.856973 B = 8935.876979 C = 9735.376217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.062 4.062 5 C 0.090 3.910 6 O -0.584 6.584 7 C -0.117 4.117 8 C 0.084 3.916 9 N -0.620 5.620 10 C 0.575 3.425 11 O -0.596 6.596 12 C -0.136 4.136 13 C -0.198 4.198 14 C -0.098 4.098 15 C -0.209 4.209 16 C 0.067 3.933 17 C -0.498 4.498 18 H 0.085 0.915 19 C 0.023 3.977 20 N -0.837 5.837 21 Si 0.986 3.014 22 H -0.258 1.258 23 H -0.275 1.275 24 H -0.252 1.252 25 C -0.126 4.126 26 C 0.111 3.889 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.017 0.983 36 H 0.392 0.608 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.111 0.889 44 H 0.283 0.717 45 H 0.093 0.907 46 H 0.052 0.948 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.603 -12.721 -1.526 21.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.129 4.129 4 C -0.063 4.063 5 C 0.012 3.988 6 O -0.391 6.391 7 C -0.155 4.155 8 C -0.038 4.038 9 N -0.352 5.352 10 C 0.367 3.633 11 O -0.478 6.478 12 C -0.139 4.139 13 C -0.217 4.217 14 C -0.115 4.115 15 C -0.229 4.229 16 C 0.065 3.935 17 C -0.528 4.528 18 H 0.103 0.897 19 C -0.190 4.190 20 N -0.463 5.463 21 Si 0.806 3.194 22 H -0.183 1.183 23 H -0.200 1.200 24 H -0.176 1.176 25 C -0.147 4.147 26 C -0.011 4.011 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.035 0.965 36 H 0.241 0.759 37 H 0.097 0.903 38 H 0.137 0.863 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.164 0.836 42 H 0.160 0.840 43 H 0.129 0.871 44 H 0.094 0.906 45 H 0.111 0.889 46 H 0.070 0.930 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.702 -11.805 -1.139 21.308 hybrid contribution 1.552 0.292 1.212 1.991 sum -16.151 -11.513 0.073 19.834 Atomic orbital electron populations 1.21755 0.95397 1.01880 1.01783 1.21550 0.96109 0.95727 1.02364 1.21494 0.90820 0.98310 1.02291 1.21512 0.97160 0.92778 0.94820 1.22236 0.95883 0.97367 0.83303 1.86423 1.75012 1.61477 1.16220 1.22786 1.01536 0.97169 0.93961 1.23155 0.99479 0.92414 0.88726 1.48850 1.13410 1.51575 1.21400 1.18550 0.80768 0.76875 0.87094 1.90682 1.77504 1.48787 1.30860 1.19698 0.93120 1.07319 0.93739 1.21314 1.00309 1.09684 0.90406 1.20975 0.92562 0.99125 0.98874 1.21488 0.96112 1.09940 0.95350 1.17945 0.94012 0.90032 0.91553 1.19849 0.92629 1.30628 1.09740 0.89696 1.26896 1.04806 0.92596 0.94690 1.69915 1.38448 1.21979 1.16006 0.85148 0.76215 0.80176 0.77838 1.18280 1.19988 1.17576 1.21393 0.91875 1.02290 0.99158 1.22468 0.87477 0.97986 0.93193 0.93430 0.92218 0.92228 0.90673 0.92382 0.92519 0.90496 0.90634 0.96502 0.75865 0.90316 0.86268 0.88546 0.88842 0.83589 0.83974 0.87087 0.90623 0.88931 0.92952 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.98 16 2 C -0.12 -1.50 5.18 30.59 0.16 -1.34 16 3 C -0.09 -1.47 3.76 30.59 0.11 -1.36 16 4 C -0.06 -1.27 0.57 -51.27 -0.03 -1.30 16 5 C 0.09 1.94 5.09 71.98 0.37 2.31 16 6 O -0.58 -13.12 12.48 -148.98 -1.86 -14.98 16 7 C -0.12 -1.99 5.76 31.64 0.18 -1.81 16 8 C 0.08 1.98 5.09 86.67 0.44 2.42 16 9 N -0.62 -21.61 3.31 -810.53 -2.68 -24.29 16 10 C 0.57 27.41 7.72 86.80 0.67 28.08 16 11 O -0.60 -34.07 16.81 -3.87 -0.07 -34.14 16 12 C -0.14 -6.67 5.73 -20.14 -0.12 -6.79 16 13 C -0.20 -7.88 7.97 22.70 0.18 -7.69 16 14 C -0.10 -3.82 10.01 22.18 0.22 -3.60 16 15 C -0.21 -9.77 9.78 22.77 0.22 -9.54 16 16 C 0.07 3.68 5.54 -21.32 -0.12 3.57 16 17 C -0.50 -27.60 9.06 23.47 0.21 -27.38 16 18 H 0.08 4.39 7.87 -2.91 -0.02 4.37 16 19 C 0.02 1.25 5.24 85.25 0.45 1.70 16 20 N -0.84 -48.76 10.88 21.83 0.24 -48.52 16 21 Si 0.99 40.69 29.57 68.60 2.03 42.72 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 24 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 25 C -0.13 -7.24 8.19 23.01 0.19 -7.06 16 26 C 0.11 3.31 6.08 86.53 0.53 3.83 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.76 6.91 -2.39 -0.02 0.74 16 31 H 0.06 0.80 6.78 -2.39 -0.02 0.78 16 32 H 0.06 1.11 7.83 -2.39 -0.02 1.09 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.21 6.73 -2.39 -0.02 1.20 16 35 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.39 5.70 9.12 -74.06 -0.68 5.03 16 37 H 0.08 1.32 7.71 -2.38 -0.02 1.31 16 38 H 0.12 1.25 6.96 -2.39 -0.02 1.23 16 39 H 0.10 1.81 7.86 -2.38 -0.02 1.79 16 40 H 0.09 2.38 5.70 -2.39 -0.01 2.36 16 41 H 0.15 4.53 4.87 -2.91 -0.01 4.52 16 42 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 43 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 44 H 0.28 15.33 8.30 -92.71 -0.77 14.56 16 45 H 0.09 5.96 6.00 -2.91 -0.02 5.95 16 46 H 0.05 1.93 7.17 -2.39 -0.02 1.92 16 47 H 0.08 2.13 7.87 -2.39 -0.02 2.12 16 Total: -1.00 -76.45 369.56 2.35 -74.10 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 0.31 Total: 32.06 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 4.38 Total: -26.95 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: -2.44 Total: -72.81 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -1.92 Total: -49.12 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -76.45 2.35 -74.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290741915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.761 kcal (2) G-P(sol) polarization free energy of solvation -76.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds