Wall clock time and date at job start Tue Mar 31 2020 13:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50704 * 120.00133 * 2 1 4 4 C 1.53000 * 109.47238 * 125.00134 * 3 2 1 5 5 C 1.53001 * 109.47010 * 60.00397 * 4 3 2 6 6 C 1.52999 * 109.47290 * 300.00351 * 4 3 2 7 7 C 1.50699 * 109.47103 * 180.02562 * 4 3 2 8 8 O 1.21288 * 119.99873 * 359.97438 * 7 4 3 9 9 N 1.34776 * 119.99874 * 180.02562 * 7 4 3 10 10 C 1.39917 * 120.00075 * 185.27630 * 9 7 4 11 11 C 1.38933 * 120.04163 * 213.30012 * 10 9 7 12 12 C 1.38126 * 120.03704 * 180.02562 * 11 10 9 13 13 C 1.38210 * 120.12957 * 359.67795 * 12 11 10 14 14 C 1.38771 * 120.08124 * 0.59791 * 13 12 11 15 15 O 1.35895 * 120.02297 * 179.70093 * 14 13 12 16 16 C 1.42900 * 116.99754 * 359.72087 * 15 14 13 17 17 C 1.52998 * 109.47222 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47324 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00090 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00026 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00159 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99976 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46927 * 89.99699 * 22 20 18 24 24 H 1.48495 * 109.47210 * 210.00104 * 22 20 18 25 25 H 1.48502 * 109.46953 * 330.00160 * 22 20 18 26 26 C 1.38631 * 119.95633 * 359.42449 * 14 13 12 27 27 H 1.07997 * 120.00099 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00051 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.00288 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46601 * 5.00580 * 3 2 1 31 31 H 1.08997 * 109.47374 * 245.00771 * 3 2 1 32 32 H 1.09000 * 109.46946 * 179.97438 * 5 4 3 33 33 H 1.09008 * 109.46927 * 300.00120 * 5 4 3 34 34 H 1.08997 * 109.46856 * 59.99820 * 5 4 3 35 35 H 1.09001 * 109.46998 * 300.00440 * 6 4 3 36 36 H 1.09008 * 109.47000 * 59.99664 * 6 4 3 37 37 H 1.09000 * 109.47314 * 180.02562 * 6 4 3 38 38 H 0.96997 * 120.00199 * 5.26862 * 9 7 4 39 39 H 1.08000 * 119.98133 * 0.02562 * 11 10 9 40 40 H 1.08000 * 119.93323 * 179.97438 * 12 11 10 41 41 H 1.07998 * 119.96326 * 180.29751 * 13 12 11 42 42 H 1.09001 * 109.47255 * 300.00595 * 16 15 14 43 43 H 1.09007 * 109.47126 * 60.00411 * 16 15 14 44 44 H 1.09001 * 109.47272 * 300.00316 * 17 16 15 45 45 H 1.08994 * 109.47017 * 59.99801 * 17 16 15 46 46 H 0.97002 * 120.00033 * 179.97438 * 21 20 18 47 47 H 1.07997 * 120.05730 * 180.25512 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 4.0246 0.1729 1.0558 6 6 2.2522 1.1962 2.4890 7 6 3.7881 2.6384 1.1819 8 8 3.5696 3.4648 0.3215 9 7 4.7052 2.8871 2.1378 10 6 5.3244 4.1400 2.2042 11 6 6.6427 4.2426 2.6306 12 6 7.2537 5.4796 2.6966 13 6 6.5583 6.6172 2.3327 14 6 5.2395 6.5214 1.9116 15 8 4.5549 7.6414 1.5599 16 6 5.2531 8.8847 1.6537 17 6 4.3275 10.0233 1.2206 18 6 5.0640 11.3344 1.3190 19 1 6.0897 11.3536 1.6563 20 6 4.4285 12.5094 0.9774 21 7 3.1799 12.4859 0.5652 22 14 5.3416 14.1345 1.0986 23 1 6.0215 14.4177 -0.1909 24 1 4.3772 15.2229 1.3993 25 1 6.3521 14.0547 2.1839 26 6 4.6227 5.2817 1.8444 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3585 2.1316 0.0897 31 1 2.6212 1.4027 -0.9314 32 1 4.7170 0.1931 1.8973 33 1 3.4796 -0.7711 1.0557 34 1 4.5823 0.2705 0.1244 35 1 1.5472 2.0226 2.5786 36 1 1.7072 0.2521 2.4889 37 1 2.9443 1.2165 3.3308 38 1 4.9358 2.1975 2.7798 39 1 7.1900 3.3547 2.9105 40 1 8.2785 5.5575 3.0287 41 1 7.0402 7.5825 2.3808 42 1 5.5701 9.0465 2.6840 43 1 6.1280 8.8600 1.0040 44 1 4.0101 9.8617 0.1904 45 1 3.4529 10.0478 1.8706 46 1 2.7327 13.3126 0.3252 47 1 3.5977 5.2048 1.5129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292401932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:28 Heat of formation + Delta-G solvation = -47.860454 kcal Electronic energy + Delta-G solvation = -25688.797730 eV Core-core repulsion = 22029.802625 eV Total energy + Delta-G solvation = -3658.995105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.00164 -39.49449 -37.60578 -36.62722 -34.68736 -33.34463 -33.06877 -30.84629 -29.53366 -28.96113 -27.81656 -26.99163 -25.09074 -24.16228 -22.55309 -21.98335 -20.71058 -20.07539 -19.19013 -18.32901 -17.02586 -16.45913 -16.15532 -15.70965 -15.62764 -15.42037 -15.25691 -15.05002 -14.65959 -14.37508 -14.22370 -13.79309 -13.52048 -13.11749 -12.91902 -12.72248 -12.68444 -12.52781 -12.30231 -12.05332 -11.76976 -11.66557 -11.55253 -11.41052 -11.27364 -11.20995 -10.91046 -10.80182 -10.53052 -10.29211 -9.80540 -9.78475 -9.63095 -9.59599 -9.26964 -8.42917 -8.22724 -7.80258 -6.07507 -4.12184 1.36395 1.65321 1.95214 2.48255 2.82068 3.29268 3.34958 3.37843 3.84310 3.98771 4.22456 4.29622 4.44040 4.45607 4.74261 4.82347 4.86116 5.01113 5.13489 5.19871 5.28720 5.29629 5.33367 5.38470 5.40912 5.46974 5.48886 5.60239 5.67288 5.69658 5.81392 5.86939 5.92298 6.05980 6.07356 6.29101 6.32320 6.38036 6.46195 6.54670 6.61557 6.77175 6.99928 7.23143 7.54340 7.68005 7.84235 7.96128 8.10175 8.26832 8.93466 9.51861 11.04106 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018353 B = 0.002337 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.246329 B =11979.389787 C =13241.476573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.151 4.151 3 C -0.074 4.074 4 C -0.074 4.074 5 C -0.144 4.144 6 C -0.141 4.141 7 C 0.518 3.482 8 O -0.507 6.507 9 N -0.671 5.671 10 C 0.178 3.822 11 C -0.197 4.197 12 C -0.061 4.061 13 C -0.226 4.226 14 C 0.165 3.835 15 O -0.312 6.312 16 C 0.065 3.935 17 C 0.025 3.975 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.164 4.164 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.409 0.591 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.132 0.868 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.852 -29.148 4.896 29.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.169 4.169 3 C -0.111 4.111 4 C -0.077 4.077 5 C -0.201 4.201 6 C -0.199 4.199 7 C 0.305 3.695 8 O -0.380 6.380 9 N -0.316 5.316 10 C 0.084 3.916 11 C -0.218 4.218 12 C -0.080 4.080 13 C -0.246 4.246 14 C 0.117 3.883 15 O -0.225 6.225 16 C -0.009 4.009 17 C -0.013 4.013 18 C -0.564 4.564 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.185 4.185 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.245 0.755 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.150 0.850 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.280 -28.424 4.123 28.750 hybrid contribution 0.820 0.667 0.414 1.135 sum 2.099 -27.756 4.537 28.203 Atomic orbital electron populations 1.23897 0.95972 1.01950 1.01087 1.22911 0.95948 0.98134 0.99882 1.20629 0.97519 0.95843 0.97121 1.20760 0.96054 0.92553 0.98375 1.21939 0.98283 0.97287 1.02601 1.21897 1.00217 1.03366 0.94393 1.20773 0.79240 0.88973 0.80543 1.90793 1.63748 1.47603 1.35837 1.43487 1.41571 1.13598 1.32930 1.17298 0.91284 0.84020 0.98963 1.20609 0.93070 0.98249 1.09846 1.20658 0.99106 0.91356 0.96851 1.21383 0.94867 1.00205 1.08118 1.18957 0.90300 0.87485 0.91590 1.86192 1.41627 1.14174 1.80514 1.23351 0.97010 0.80546 0.99995 1.19130 0.94819 0.89315 0.97994 1.20968 0.98794 0.90864 1.45771 0.92349 1.24998 0.94928 0.99361 0.94957 1.69980 1.10879 1.27770 1.44108 0.86484 0.79461 0.82930 0.78483 1.20497 1.21062 1.19771 1.20251 1.01721 0.88648 1.07859 0.88544 0.88439 0.87254 0.90385 0.90033 0.92138 0.90848 0.91761 0.91754 0.90863 0.92133 0.75540 0.86162 0.85715 0.85045 0.93050 0.93047 0.95349 0.95384 0.92711 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.29 14.32 29.02 0.42 -0.87 16 2 C -0.15 -1.02 7.65 -36.02 -0.28 -1.30 16 3 C -0.07 -0.64 4.02 -27.88 -0.11 -0.76 16 4 C -0.07 -0.58 0.65 -155.66 -0.10 -0.68 16 5 C -0.14 -0.79 8.11 37.16 0.30 -0.49 16 6 C -0.14 -0.91 8.13 37.16 0.30 -0.61 16 7 C 0.52 6.07 6.22 -10.99 -0.07 6.01 16 8 O -0.51 -8.35 13.67 5.55 0.08 -8.27 16 9 N -0.67 -6.97 5.12 -9.88 -0.05 -7.02 16 10 C 0.18 2.45 6.28 -83.72 -0.53 1.93 16 11 C -0.20 -2.37 9.96 -39.37 -0.39 -2.77 16 12 C -0.06 -0.79 10.03 -39.63 -0.40 -1.19 16 13 C -0.23 -3.64 9.04 -39.39 -0.36 -4.00 16 14 C 0.16 3.09 6.68 -39.24 -0.26 2.83 16 15 O -0.31 -6.88 10.13 -19.41 -0.20 -7.08 16 16 C 0.06 1.45 4.68 37.16 0.17 1.62 16 17 C 0.02 0.66 5.34 -27.88 -0.15 0.52 16 18 C -0.53 -14.92 9.11 -34.44 -0.31 -15.24 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 22 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.16 -2.85 8.59 -39.25 -0.34 -3.19 16 27 H 0.10 0.52 8.06 -52.49 -0.42 0.10 16 28 H 0.10 0.69 7.84 -52.48 -0.41 0.28 16 29 H 0.11 0.58 6.80 -52.49 -0.36 0.22 16 30 H 0.08 0.80 7.75 -51.93 -0.40 0.40 16 31 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.06 0.25 7.45 -51.93 -0.39 -0.14 16 33 H 0.07 0.30 6.53 -51.92 -0.34 -0.04 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.39 7.22 -51.92 -0.37 0.01 16 37 H 0.06 0.31 7.69 -51.93 -0.40 -0.09 16 38 H 0.41 2.71 7.68 -40.82 -0.31 2.39 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.13 2.05 6.29 -52.49 -0.33 1.72 16 42 H 0.05 1.07 7.67 -51.93 -0.40 0.67 16 43 H 0.05 1.09 7.65 -51.92 -0.40 0.69 16 44 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.14 2.62 6.41 -52.49 -0.34 2.28 16 LS Contribution 385.20 15.07 5.80 5.80 Total: -1.00 -33.60 385.20 -8.21 -41.82 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.37 Total: 0.98 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -2.19 Total: -16.56 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.69 Total: -33.23 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.12 Total: -15.35 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.60 -8.21 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292401932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.045 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds