Wall clock time and date at job start Tue Mar 31 2020 13:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50704 * 120.00133 * 2 1 4 4 C 1.53000 * 109.47238 * 125.00134 * 3 2 1 5 5 C 1.53001 * 109.47010 * 60.00397 * 4 3 2 6 6 C 1.52999 * 109.47290 * 300.00351 * 4 3 2 7 7 C 1.50699 * 109.47103 * 180.02562 * 4 3 2 8 8 O 1.21288 * 119.99873 * 359.97438 * 7 4 3 9 9 N 1.34776 * 119.99874 * 180.02562 * 7 4 3 10 10 C 1.39917 * 120.00075 * 185.27630 * 9 7 4 11 11 C 1.38933 * 120.04163 * 213.30012 * 10 9 7 12 12 C 1.38126 * 120.03704 * 180.02562 * 11 10 9 13 13 C 1.38210 * 120.12957 * 359.67795 * 12 11 10 14 14 C 1.38771 * 120.08124 * 0.59791 * 13 12 11 15 15 O 1.35895 * 120.02297 * 179.70093 * 14 13 12 16 16 C 1.42900 * 116.99754 * 359.72087 * 15 14 13 17 17 C 1.52998 * 109.47222 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47324 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00090 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00026 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00159 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99976 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46927 * 89.99699 * 22 20 18 24 24 H 1.48495 * 109.47210 * 210.00104 * 22 20 18 25 25 H 1.48502 * 109.46953 * 330.00160 * 22 20 18 26 26 C 1.38631 * 119.95633 * 359.42449 * 14 13 12 27 27 H 1.07997 * 120.00099 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00051 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.00288 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46601 * 5.00580 * 3 2 1 31 31 H 1.08997 * 109.47374 * 245.00771 * 3 2 1 32 32 H 1.09000 * 109.46946 * 179.97438 * 5 4 3 33 33 H 1.09008 * 109.46927 * 300.00120 * 5 4 3 34 34 H 1.08997 * 109.46856 * 59.99820 * 5 4 3 35 35 H 1.09001 * 109.46998 * 300.00440 * 6 4 3 36 36 H 1.09008 * 109.47000 * 59.99664 * 6 4 3 37 37 H 1.09000 * 109.47314 * 180.02562 * 6 4 3 38 38 H 0.96997 * 120.00199 * 5.26862 * 9 7 4 39 39 H 1.08000 * 119.98133 * 0.02562 * 11 10 9 40 40 H 1.08000 * 119.93323 * 179.97438 * 12 11 10 41 41 H 1.07998 * 119.96326 * 180.29751 * 13 12 11 42 42 H 1.09001 * 109.47255 * 300.00595 * 16 15 14 43 43 H 1.09007 * 109.47126 * 60.00411 * 16 15 14 44 44 H 1.09001 * 109.47272 * 300.00316 * 17 16 15 45 45 H 1.08994 * 109.47017 * 59.99801 * 17 16 15 46 46 H 0.97002 * 120.00033 * 179.97438 * 21 20 18 47 47 H 1.07997 * 120.05730 * 180.25512 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 4.0246 0.1729 1.0558 6 6 2.2522 1.1962 2.4890 7 6 3.7881 2.6384 1.1819 8 8 3.5696 3.4648 0.3215 9 7 4.7052 2.8871 2.1378 10 6 5.3244 4.1400 2.2042 11 6 6.6427 4.2426 2.6306 12 6 7.2537 5.4796 2.6966 13 6 6.5583 6.6172 2.3327 14 6 5.2395 6.5214 1.9116 15 8 4.5549 7.6414 1.5599 16 6 5.2531 8.8847 1.6537 17 6 4.3275 10.0233 1.2206 18 6 5.0640 11.3344 1.3190 19 1 6.0897 11.3536 1.6563 20 6 4.4285 12.5094 0.9774 21 7 3.1799 12.4859 0.5652 22 14 5.3416 14.1345 1.0986 23 1 6.0215 14.4177 -0.1909 24 1 4.3772 15.2229 1.3993 25 1 6.3521 14.0547 2.1839 26 6 4.6227 5.2817 1.8444 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3585 2.1316 0.0897 31 1 2.6212 1.4027 -0.9314 32 1 4.7170 0.1931 1.8973 33 1 3.4796 -0.7711 1.0557 34 1 4.5823 0.2705 0.1244 35 1 1.5472 2.0226 2.5786 36 1 1.7072 0.2521 2.4889 37 1 2.9443 1.2165 3.3308 38 1 4.9358 2.1975 2.7798 39 1 7.1900 3.3547 2.9105 40 1 8.2785 5.5575 3.0287 41 1 7.0402 7.5825 2.3808 42 1 5.5701 9.0465 2.6840 43 1 6.1280 8.8600 1.0040 44 1 4.0101 9.8617 0.1904 45 1 3.4529 10.0478 1.8706 46 1 2.7327 13.3126 0.3252 47 1 3.5977 5.2048 1.5129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292401932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:27 Heat of formation + Delta-G solvation = -68.367829 kcal Electronic energy + Delta-G solvation = -25689.686997 eV Core-core repulsion = 22029.802625 eV Total energy + Delta-G solvation = -3659.884372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.99267 -40.79729 -38.78700 -37.55489 -35.84206 -35.39636 -33.70264 -32.62273 -30.99810 -30.17448 -28.29757 -27.60967 -27.04358 -25.21731 -23.65160 -23.58025 -22.11615 -21.01465 -19.98013 -19.58949 -18.44385 -17.86066 -17.33126 -17.02030 -16.90903 -16.79505 -16.51108 -16.20524 -15.93498 -15.51084 -14.96331 -14.61131 -14.51247 -14.38619 -14.30456 -14.26292 -13.67146 -13.46594 -13.29482 -13.23439 -12.97296 -12.76480 -12.66965 -12.63324 -12.56960 -12.22565 -12.10879 -11.87308 -11.85510 -11.79701 -11.60592 -11.43684 -11.24581 -10.74759 -10.64577 -10.19612 -9.44807 -9.03614 -8.28351 -6.42945 0.20592 0.46287 1.39177 1.39590 1.42673 1.52239 1.53868 1.90483 2.28623 2.51385 2.80733 3.05796 3.46478 3.69163 3.84491 3.88859 4.12261 4.16843 4.18662 4.21623 4.23981 4.24636 4.32490 4.42594 4.55589 4.67756 4.70433 4.72613 4.76427 4.81670 4.88754 4.94868 5.07271 5.12416 5.22579 5.25825 5.27172 5.31582 5.34080 5.38705 5.42163 5.49521 5.66123 5.74904 5.89460 5.92377 6.04414 6.36317 6.53604 6.71983 7.08129 7.27388 8.85193 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018353 B = 0.002337 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.246329 B =11979.389787 C =13241.476573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C -0.075 4.075 4 C -0.065 4.065 5 C -0.141 4.141 6 C -0.139 4.139 7 C 0.512 3.488 8 O -0.564 6.564 9 N -0.654 5.654 10 C 0.179 3.821 11 C -0.174 4.174 12 C -0.051 4.051 13 C -0.235 4.235 14 C 0.124 3.876 15 O -0.347 6.347 16 C 0.085 3.915 17 C 0.027 3.973 18 C -0.545 4.545 19 H 0.074 0.926 20 C -0.002 4.002 21 N -0.934 5.934 22 Si 0.980 3.020 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.256 1.256 26 C -0.189 4.189 27 H 0.116 0.884 28 H 0.083 0.917 29 H 0.135 0.865 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.041 0.959 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.431 0.569 39 H 0.170 0.830 40 H 0.167 0.833 41 H 0.133 0.867 42 H 0.066 0.934 43 H 0.061 0.939 44 H -0.007 1.007 45 H -0.003 1.003 46 H 0.267 0.733 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.099 -31.887 6.902 33.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.165 4.165 3 C -0.113 4.113 4 C -0.068 4.068 5 C -0.198 4.198 6 C -0.196 4.196 7 C 0.301 3.699 8 O -0.441 6.441 9 N -0.301 5.301 10 C 0.084 3.916 11 C -0.194 4.194 12 C -0.070 4.070 13 C -0.254 4.254 14 C 0.078 3.922 15 O -0.261 6.261 16 C 0.011 3.989 17 C -0.010 4.010 18 C -0.583 4.583 19 H 0.092 0.908 20 C -0.200 4.200 21 N -0.573 5.573 22 Si 0.803 3.197 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.180 1.180 26 C -0.210 4.210 27 H 0.134 0.866 28 H 0.102 0.898 29 H 0.153 0.847 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.271 0.729 39 H 0.188 0.812 40 H 0.185 0.815 41 H 0.151 0.849 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.012 0.988 45 H 0.015 0.985 46 H 0.076 0.924 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.547 -31.229 6.170 32.156 hybrid contribution -0.234 1.366 -0.216 1.402 sum 4.314 -29.863 5.954 30.755 Atomic orbital electron populations 1.24026 0.96151 1.02284 1.00775 1.22915 0.95863 0.97684 1.00075 1.20590 0.97327 0.96339 0.97056 1.20777 0.96114 0.91270 0.98641 1.21984 0.98048 0.96632 1.03163 1.21923 1.00219 1.03446 0.94052 1.21637 0.78822 0.89728 0.79671 1.90782 1.65329 1.49710 1.38241 1.43403 1.40825 1.12903 1.32951 1.17460 0.92115 0.84037 0.97990 1.21142 0.91772 0.99796 1.06720 1.21160 1.00609 0.90305 0.94894 1.21532 0.93680 1.01829 1.08404 1.19264 0.91943 0.86507 0.94533 1.86095 1.42941 1.14977 1.82124 1.22902 0.95556 0.79784 1.00691 1.18982 0.94888 0.91883 0.95288 1.21391 0.99579 0.91426 1.45855 0.90769 1.26125 0.95787 1.03969 0.94132 1.70141 1.12922 1.29148 1.45062 0.85221 0.78196 0.77087 0.79163 1.19533 1.20630 1.18001 1.20220 1.01020 0.89986 1.09743 0.86574 0.89823 0.84697 0.93305 0.91781 0.89824 0.88635 0.92668 0.93977 0.88942 0.90034 0.72851 0.81233 0.81518 0.84918 0.91614 0.92049 0.98842 0.98503 0.92426 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.48 14.32 67.79 0.97 -1.51 16 2 C -0.15 -1.83 7.65 25.65 0.20 -1.63 16 3 C -0.08 -1.39 4.02 29.85 0.12 -1.27 16 4 C -0.06 -0.96 0.65 -52.93 -0.03 -1.00 16 5 C -0.14 -1.11 8.11 71.98 0.58 -0.53 16 6 C -0.14 -1.57 8.13 71.98 0.59 -0.98 16 7 C 0.51 12.22 6.22 87.66 0.54 12.76 16 8 O -0.56 -20.19 13.67 -3.05 -0.04 -20.24 16 9 N -0.65 -12.53 5.12 -303.55 -1.55 -14.08 16 10 C 0.18 4.72 6.28 38.14 0.24 4.96 16 11 C -0.17 -3.48 9.96 22.41 0.22 -3.26 16 12 C -0.05 -1.14 10.03 22.24 0.22 -0.92 16 13 C -0.24 -7.40 9.04 22.39 0.20 -7.20 16 14 C 0.12 4.89 6.68 22.49 0.15 5.04 16 15 O -0.35 -16.57 10.13 -92.36 -0.94 -17.50 16 16 C 0.08 3.98 4.68 71.98 0.34 4.31 16 17 C 0.03 1.55 5.34 29.85 0.16 1.71 16 18 C -0.54 -31.76 9.11 25.60 0.23 -31.53 16 19 H 0.07 3.99 7.74 -2.91 -0.02 3.97 16 20 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 21 N -0.93 -58.76 13.29 21.45 0.28 -58.47 16 22 Si 0.98 44.48 29.54 68.60 2.03 46.51 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 26 C -0.19 -6.96 8.59 22.49 0.19 -6.77 16 27 H 0.12 1.03 8.06 -2.91 -0.02 1.01 16 28 H 0.08 1.27 7.84 -2.91 -0.02 1.25 16 29 H 0.14 1.01 6.80 -2.91 -0.02 0.99 16 30 H 0.05 1.15 7.75 -2.39 -0.02 1.13 16 31 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 32 H 0.08 0.29 7.45 -2.39 -0.02 0.27 16 33 H 0.09 0.38 6.53 -2.38 -0.02 0.37 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 0.72 7.22 -2.38 -0.02 0.71 16 37 H 0.08 0.57 7.69 -2.39 -0.02 0.56 16 38 H 0.43 4.10 7.68 -92.71 -0.71 3.38 16 39 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 40 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 41 H 0.13 4.05 6.29 -2.91 -0.02 4.03 16 42 H 0.07 2.83 7.67 -2.39 -0.02 2.81 16 43 H 0.06 2.69 7.65 -2.38 -0.02 2.68 16 44 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 45 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 46 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 47 H 0.11 4.54 6.41 -2.91 -0.02 4.52 16 Total: -1.00 -81.16 385.20 5.41 -75.74 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.24 Total: 15.50 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 5.39 Total: -27.46 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -1.27 Total: -72.55 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -0.98 Total: -37.74 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -81.16 5.41 -75.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292401932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.376 kcal (2) G-P(sol) polarization free energy of solvation -81.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds