Wall clock time and date at job start Tue Mar 31 2020 11:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 120.00428 * 2 1 4 4 N 1.46906 * 109.46822 * 124.15423 * 3 2 1 5 5 C 1.46900 * 111.00243 * 300.63516 * 4 3 2 6 6 C 1.50697 * 109.47320 * 288.28695 * 5 4 3 7 7 H 1.08006 * 119.99983 * 356.03588 * 6 5 4 8 8 C 1.37878 * 119.99907 * 176.03497 * 6 5 4 9 9 N 1.31516 * 119.99681 * 179.97438 * 8 6 5 10 10 Si 1.86793 * 120.00040 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47002 * 89.99995 * 10 8 6 12 12 H 1.48503 * 109.47122 * 209.99863 * 10 8 6 13 13 H 1.48498 * 109.47221 * 329.99792 * 10 8 6 14 14 C 1.46898 * 111.00022 * 64.59645 * 4 3 2 15 15 C 1.50696 * 109.47322 * 66.04087 * 14 4 3 16 16 C 1.38288 * 119.95726 * 90.00205 * 15 14 4 17 17 C 1.38085 * 120.03346 * 180.02562 * 16 15 14 18 18 C 1.38848 * 119.99157 * 0.26731 * 17 16 15 19 19 C 1.38592 * 119.86123 * 359.40875 * 18 17 16 20 20 C 1.38219 * 119.95603 * 270.02330 * 15 14 4 21 21 C 1.50787 * 120.42390 * 180.46991 * 19 18 17 22 22 O 1.43076 * 109.30409 * 344.09572 * 21 19 18 23 23 C 1.43258 * 113.03973 * 48.57672 * 22 21 19 24 24 C 1.52997 * 109.61550 * 54.30107 * 23 22 21 25 25 C 1.53002 * 109.61320 * 174.64903 * 23 22 21 26 26 O 1.35976 * 119.59116 * 179.86393 * 18 17 16 27 27 H 1.07993 * 120.00280 * 180.02562 * 1 2 3 28 28 H 1.08006 * 119.99178 * 359.97438 * 1 2 3 29 29 H 1.08006 * 119.99214 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.46997 * 4.15575 * 3 2 1 31 31 H 1.08996 * 109.47232 * 244.15678 * 3 2 1 32 32 H 1.09004 * 109.46829 * 48.28884 * 5 4 3 33 33 H 1.08991 * 109.46864 * 168.28502 * 5 4 3 34 34 H 0.97005 * 119.99695 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.46819 * 306.03876 * 14 4 3 36 36 H 1.09000 * 109.47226 * 186.04261 * 14 4 3 37 37 H 1.08001 * 119.98394 * 0.04303 * 16 15 14 38 38 H 1.08002 * 120.00365 * 179.97438 * 17 16 15 39 39 H 1.07994 * 119.94913 * 359.96201 * 20 15 14 40 40 H 1.09002 * 109.49378 * 104.04149 * 21 19 18 41 41 H 1.08997 * 109.49887 * 224.14253 * 21 19 18 42 42 H 1.09003 * 109.47212 * 59.99815 * 24 23 22 43 43 H 1.08999 * 109.47322 * 179.97438 * 24 23 22 44 44 H 1.08997 * 109.47185 * 299.99802 * 24 23 22 45 45 H 1.09003 * 109.46968 * 60.00172 * 25 23 22 46 46 H 1.09000 * 109.47235 * 179.97438 * 25 23 22 47 47 H 1.08998 * 109.47615 * 300.00078 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9819 1.3402 1.1462 5 6 2.2491 1.2051 2.4122 6 6 1.4812 2.4725 2.6859 7 1 1.5824 3.3191 2.0229 8 6 0.6493 2.5514 3.7826 9 7 -0.0204 3.6577 4.0217 10 14 0.4748 1.0875 4.9296 11 1 1.4931 1.1783 6.0066 12 1 -0.8831 1.0889 5.5309 13 1 0.6754 -0.1686 4.1632 14 6 4.0166 0.3047 1.0237 15 6 4.9023 0.6165 -0.1550 16 6 6.0307 1.3973 0.0166 17 6 6.8431 1.6844 -1.0625 18 6 6.5239 1.1937 -2.3215 19 6 5.3961 0.4059 -2.4896 20 6 4.5854 0.1222 -1.4063 21 6 5.0434 -0.1425 -3.8492 22 8 5.7788 0.5670 -4.8507 23 6 7.1751 0.6756 -4.5493 24 6 7.7548 -0.7167 -4.2915 25 6 7.9054 1.3260 -5.7260 26 8 7.3281 1.4838 -3.3790 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5399 0.9354 0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3577 2.1322 0.0745 31 1 2.6332 1.3957 -0.9248 32 1 1.5550 0.3675 2.3426 33 1 2.9549 1.0256 3.2231 34 1 -0.6060 3.7131 4.7931 35 1 3.5434 -0.6661 0.8759 36 1 4.6170 0.2816 1.9332 37 1 6.2769 1.7824 0.9951 38 1 7.7240 2.2946 -0.9280 39 1 3.7038 -0.4876 -1.5377 40 1 5.2988 -1.2013 -3.8919 41 1 3.9750 -0.0180 -4.0257 42 1 7.6230 -1.3352 -5.1793 43 1 8.8171 -0.6314 -4.0630 44 1 7.2372 -1.1754 -3.4490 45 1 7.4950 2.3201 -5.9037 46 1 8.9673 1.4079 -5.4942 47 1 7.7741 0.7139 -6.6184 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292837575.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:53 Heat of formation + Delta-G solvation = -28.761265 kcal Electronic energy + Delta-G solvation = -27045.851843 eV Core-core repulsion = 23387.684941 eV Total energy + Delta-G solvation = -3658.166902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.29859 -38.85763 -37.10552 -36.42804 -33.29641 -32.78556 -32.14363 -31.56587 -30.36750 -28.08676 -27.55771 -26.33758 -25.92927 -23.77646 -22.83259 -21.82707 -20.82202 -19.58658 -18.92502 -18.66819 -16.90785 -16.72128 -16.24347 -15.80539 -15.21927 -15.07761 -14.93121 -14.76247 -14.20578 -14.15297 -13.97576 -13.80813 -13.45058 -13.13971 -12.92878 -12.71571 -12.66279 -12.56291 -12.36309 -12.20192 -12.09213 -11.68171 -11.52195 -11.23516 -11.12237 -11.00970 -10.79092 -10.75085 -10.47079 -10.37153 -10.21072 -9.85775 -9.33399 -8.87934 -8.72526 -8.54111 -8.07447 -7.34225 -6.02806 -3.99178 1.31339 1.43826 2.76764 2.96311 3.24587 3.28418 3.36118 3.37707 3.74545 4.28510 4.38475 4.43385 4.51364 4.72170 4.93081 5.02267 5.08762 5.12700 5.17521 5.22198 5.26472 5.27897 5.29713 5.37320 5.43227 5.53025 5.58084 5.63032 5.73186 5.74403 5.81015 5.96270 6.09180 6.13650 6.25432 6.31077 6.34036 6.58703 6.61080 6.78303 6.83413 6.84596 7.00938 7.08119 7.25620 7.35189 7.62639 7.90540 8.02764 8.68357 9.07437 9.59417 11.10540 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025126 B = 0.003023 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.102168 B = 9261.483297 C = 9669.938321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.186 4.186 3 C 0.086 3.914 4 N -0.513 5.513 5 C 0.158 3.842 6 C -0.502 4.502 7 H 0.080 0.920 8 C 0.069 3.931 9 N -0.901 5.901 10 Si 0.871 3.129 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.087 3.913 15 C -0.089 4.089 16 C -0.060 4.060 17 C -0.147 4.147 18 C 0.128 3.872 19 C -0.206 4.206 20 C -0.070 4.070 21 C 0.104 3.896 22 O -0.379 6.379 23 C 0.268 3.732 24 C -0.202 4.202 25 C -0.129 4.129 26 O -0.324 6.324 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.000 1.000 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.035 0.965 36 H 0.077 0.923 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.707 -10.864 -17.252 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.206 4.206 3 C -0.042 4.042 4 N -0.235 5.235 5 C 0.032 3.968 6 C -0.540 4.540 7 H 0.098 0.902 8 C -0.132 4.132 9 N -0.541 5.541 10 Si 0.698 3.302 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.192 1.192 14 C -0.041 4.041 15 C -0.090 4.090 16 C -0.078 4.078 17 C -0.165 4.165 18 C 0.083 3.917 19 C -0.207 4.207 20 C -0.089 4.089 21 C 0.028 3.972 22 O -0.299 6.299 23 C 0.192 3.808 24 C -0.260 4.260 25 C -0.186 4.186 26 O -0.241 6.241 27 H 0.103 0.897 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.018 0.982 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.096 0.904 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.086 0.914 41 H 0.129 0.871 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.887 -10.089 -17.292 24.949 hybrid contribution -0.756 -1.810 1.054 2.227 sum 14.131 -11.899 -16.239 24.597 Atomic orbital electron populations 1.23796 0.96091 1.01408 1.00300 1.23575 0.96762 0.99762 1.00491 1.21328 0.94680 0.94445 0.93706 1.62283 1.13311 1.44472 1.03446 1.20255 0.92719 0.97623 0.86153 1.20991 1.23640 0.98676 1.10694 0.90213 1.24870 0.95432 0.95525 0.97404 1.69896 1.29082 1.26315 1.28793 0.86929 0.77569 0.84070 0.81624 1.20260 1.21285 1.19208 1.21058 0.93670 0.93979 0.95372 1.19800 0.95986 0.98468 0.94770 1.20922 0.93123 0.95284 0.98512 1.20511 1.02098 1.04308 0.89628 1.18455 0.89702 0.96369 0.87137 1.20147 0.97814 1.05591 0.97127 1.20650 0.97946 0.98974 0.91306 1.21474 0.97204 0.94955 0.83532 1.88289 1.20008 1.76457 1.45174 1.23125 0.82467 0.90219 0.84979 1.22837 1.03060 0.96400 1.03678 1.21650 1.00051 1.02246 0.94662 1.86256 1.58324 1.57401 1.22084 0.89661 0.88049 0.88726 0.89332 0.91439 0.98227 0.96229 0.92751 0.94671 0.90443 0.84922 0.85278 0.85810 0.91386 0.87106 0.90087 0.90193 0.91198 0.90541 0.89918 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 14.32 29.01 0.42 -2.57 16 2 C -0.19 -3.16 7.35 -36.03 -0.26 -3.42 16 3 C 0.09 1.62 5.33 -4.97 -0.03 1.59 16 4 N -0.51 -10.41 4.65 -238.97 -1.11 -11.52 16 5 C 0.16 3.75 3.67 -4.98 -0.02 3.73 16 6 C -0.50 -14.08 9.10 -34.44 -0.31 -14.39 16 7 H 0.08 2.47 7.86 -52.48 -0.41 2.05 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 10 Si 0.87 21.43 27.55 -169.99 -4.68 16.75 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.27 -6.35 6.43 56.52 0.36 -5.98 16 14 C 0.09 1.43 4.96 -4.98 -0.02 1.41 16 15 C -0.09 -1.33 4.89 -104.61 -0.51 -1.84 16 16 C -0.06 -0.85 9.69 -39.62 -0.38 -1.23 16 17 C -0.15 -2.00 9.97 -39.41 -0.39 -2.39 16 18 C 0.13 1.79 6.13 -39.23 -0.24 1.54 16 19 C -0.21 -2.70 5.24 -104.44 -0.55 -3.25 16 20 C -0.07 -0.94 7.56 -39.58 -0.30 -1.24 16 21 C 0.10 1.15 6.18 36.05 0.22 1.37 16 22 O -0.38 -4.59 10.48 -59.11 -0.62 -5.21 16 23 C 0.27 2.84 1.51 -26.73 -0.04 2.80 16 24 C -0.20 -1.69 8.23 37.16 0.31 -1.38 16 25 C -0.13 -1.00 9.24 37.16 0.34 -0.66 16 26 O -0.32 -4.30 9.87 -43.55 -0.43 -4.73 16 27 H 0.09 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.10 1.80 7.84 -52.48 -0.41 1.39 16 29 H 0.09 1.45 6.81 -52.48 -0.36 1.10 16 30 H 0.09 1.89 7.01 -51.93 -0.36 1.53 16 31 H 0.07 1.16 5.84 -51.93 -0.30 0.86 16 32 H 0.00 0.00 5.48 -51.93 -0.28 -0.28 16 33 H 0.02 0.47 7.44 -51.93 -0.39 0.08 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.04 0.55 6.30 -51.93 -0.33 0.22 16 36 H 0.08 1.24 7.81 -51.93 -0.41 0.84 16 37 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 39 H 0.12 1.51 7.91 -52.49 -0.42 1.10 16 40 H 0.07 0.62 6.97 -51.93 -0.36 0.25 16 41 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.65 6.02 -51.93 -0.31 0.34 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -31.91 370.62 -9.68 -41.58 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.32 Total: 2.39 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -1.87 Total: -18.04 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: -0.34 Total: -38.33 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.93 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.68 Total: 16.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.91 -9.68 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292837575.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.824 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds