Wall clock time and date at job start Tue Mar 31 2020 11:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 120.00428 * 2 1 4 4 N 1.46906 * 109.46822 * 124.15423 * 3 2 1 5 5 C 1.46900 * 111.00243 * 300.63516 * 4 3 2 6 6 C 1.50697 * 109.47320 * 288.28695 * 5 4 3 7 7 H 1.08006 * 119.99983 * 356.03588 * 6 5 4 8 8 C 1.37878 * 119.99907 * 176.03497 * 6 5 4 9 9 N 1.31516 * 119.99681 * 179.97438 * 8 6 5 10 10 Si 1.86793 * 120.00040 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47002 * 89.99995 * 10 8 6 12 12 H 1.48503 * 109.47122 * 209.99863 * 10 8 6 13 13 H 1.48498 * 109.47221 * 329.99792 * 10 8 6 14 14 C 1.46898 * 111.00022 * 64.59645 * 4 3 2 15 15 C 1.50696 * 109.47322 * 66.04087 * 14 4 3 16 16 C 1.38288 * 119.95726 * 90.00205 * 15 14 4 17 17 C 1.38085 * 120.03346 * 180.02562 * 16 15 14 18 18 C 1.38848 * 119.99157 * 0.26731 * 17 16 15 19 19 C 1.38592 * 119.86123 * 359.40875 * 18 17 16 20 20 C 1.38219 * 119.95603 * 270.02330 * 15 14 4 21 21 C 1.50787 * 120.42390 * 180.46991 * 19 18 17 22 22 O 1.43076 * 109.30409 * 344.09572 * 21 19 18 23 23 C 1.43258 * 113.03973 * 48.57672 * 22 21 19 24 24 C 1.52997 * 109.61550 * 54.30107 * 23 22 21 25 25 C 1.53002 * 109.61320 * 174.64903 * 23 22 21 26 26 O 1.35976 * 119.59116 * 179.86393 * 18 17 16 27 27 H 1.07993 * 120.00280 * 180.02562 * 1 2 3 28 28 H 1.08006 * 119.99178 * 359.97438 * 1 2 3 29 29 H 1.08006 * 119.99214 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.46997 * 4.15575 * 3 2 1 31 31 H 1.08996 * 109.47232 * 244.15678 * 3 2 1 32 32 H 1.09004 * 109.46829 * 48.28884 * 5 4 3 33 33 H 1.08991 * 109.46864 * 168.28502 * 5 4 3 34 34 H 0.97005 * 119.99695 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.46819 * 306.03876 * 14 4 3 36 36 H 1.09000 * 109.47226 * 186.04261 * 14 4 3 37 37 H 1.08001 * 119.98394 * 0.04303 * 16 15 14 38 38 H 1.08002 * 120.00365 * 179.97438 * 17 16 15 39 39 H 1.07994 * 119.94913 * 359.96201 * 20 15 14 40 40 H 1.09002 * 109.49378 * 104.04149 * 21 19 18 41 41 H 1.08997 * 109.49887 * 224.14253 * 21 19 18 42 42 H 1.09003 * 109.47212 * 59.99815 * 24 23 22 43 43 H 1.08999 * 109.47322 * 179.97438 * 24 23 22 44 44 H 1.08997 * 109.47185 * 299.99802 * 24 23 22 45 45 H 1.09003 * 109.46968 * 60.00172 * 25 23 22 46 46 H 1.09000 * 109.47235 * 179.97438 * 25 23 22 47 47 H 1.08998 * 109.47615 * 300.00078 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9819 1.3402 1.1462 5 6 2.2491 1.2051 2.4122 6 6 1.4812 2.4725 2.6859 7 1 1.5824 3.3191 2.0229 8 6 0.6493 2.5514 3.7826 9 7 -0.0204 3.6577 4.0217 10 14 0.4748 1.0875 4.9296 11 1 1.4931 1.1783 6.0066 12 1 -0.8831 1.0889 5.5309 13 1 0.6754 -0.1686 4.1632 14 6 4.0166 0.3047 1.0237 15 6 4.9023 0.6165 -0.1550 16 6 6.0307 1.3973 0.0166 17 6 6.8431 1.6844 -1.0625 18 6 6.5239 1.1937 -2.3215 19 6 5.3961 0.4059 -2.4896 20 6 4.5854 0.1222 -1.4063 21 6 5.0434 -0.1425 -3.8492 22 8 5.7788 0.5670 -4.8507 23 6 7.1751 0.6756 -4.5493 24 6 7.7548 -0.7167 -4.2915 25 6 7.9054 1.3260 -5.7260 26 8 7.3281 1.4838 -3.3790 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5399 0.9354 0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3577 2.1322 0.0745 31 1 2.6332 1.3957 -0.9248 32 1 1.5550 0.3675 2.3426 33 1 2.9549 1.0256 3.2231 34 1 -0.6060 3.7131 4.7931 35 1 3.5434 -0.6661 0.8759 36 1 4.6170 0.2816 1.9332 37 1 6.2769 1.7824 0.9951 38 1 7.7240 2.2946 -0.9280 39 1 3.7038 -0.4876 -1.5377 40 1 5.2988 -1.2013 -3.8919 41 1 3.9750 -0.0180 -4.0257 42 1 7.6230 -1.3352 -5.1793 43 1 8.8171 -0.6314 -4.0630 44 1 7.2372 -1.1754 -3.4490 45 1 7.4950 2.3201 -5.9037 46 1 8.9673 1.4079 -5.4942 47 1 7.7741 0.7139 -6.6184 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292837575.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:52 Heat of formation + Delta-G solvation = -48.215582 kcal Electronic energy + Delta-G solvation = -27046.695445 eV Core-core repulsion = 23387.684941 eV Total energy + Delta-G solvation = -3659.010505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.21476 -40.03774 -38.39513 -37.39791 -34.79739 -34.30877 -33.45973 -32.53248 -31.66802 -29.44930 -28.67415 -27.47506 -26.97548 -25.32092 -23.84693 -22.98704 -22.44106 -20.70790 -20.02722 -19.76607 -18.83305 -17.87102 -17.17301 -16.84060 -16.55930 -16.41832 -16.21980 -15.86731 -15.65500 -15.46476 -15.11887 -15.03349 -14.58031 -14.44721 -14.19609 -13.76207 -13.61596 -13.45579 -13.37767 -13.14405 -13.12082 -12.99988 -12.73888 -12.72043 -12.41887 -12.31230 -12.27166 -12.15095 -11.99429 -11.75860 -11.59728 -11.41832 -11.09724 -10.75086 -10.24278 -9.76992 -9.17843 -8.87400 -8.24647 -6.26549 0.27715 0.36550 1.35314 1.36485 1.41989 1.47091 2.08917 2.36346 2.44834 2.68756 3.09645 3.45682 3.54483 3.61051 3.72449 3.79852 3.91459 4.06263 4.17606 4.26709 4.32455 4.34516 4.43796 4.48273 4.52014 4.59149 4.64036 4.65188 4.69958 4.75181 4.88677 4.92947 4.98195 4.99093 5.02642 5.07678 5.10612 5.19456 5.25830 5.32813 5.58274 5.67833 5.70236 5.70540 5.83105 5.87787 6.08575 6.39429 6.41024 6.69396 6.79697 7.36557 8.92523 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025126 B = 0.003023 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.102168 B = 9261.483297 C = 9669.938321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.188 4.188 3 C 0.092 3.908 4 N -0.532 5.532 5 C 0.171 3.829 6 C -0.504 4.504 7 H 0.031 0.969 8 C 0.008 3.992 9 N -0.952 5.952 10 Si 0.942 3.058 11 H -0.266 1.266 12 H -0.285 1.285 13 H -0.247 1.247 14 C 0.092 3.908 15 C -0.104 4.104 16 C -0.069 4.069 17 C -0.155 4.155 18 C 0.117 3.883 19 C -0.208 4.208 20 C -0.068 4.068 21 C 0.101 3.899 22 O -0.394 6.394 23 C 0.252 3.748 24 C -0.196 4.196 25 C -0.128 4.128 26 O -0.338 6.338 27 H 0.114 0.886 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.003 0.997 33 H 0.025 0.975 34 H 0.265 0.735 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.097 0.903 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.814 -14.058 -18.148 27.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.207 4.207 3 C -0.036 4.036 4 N -0.255 5.255 5 C 0.044 3.956 6 C -0.543 4.543 7 H 0.049 0.951 8 C -0.189 4.189 9 N -0.593 5.593 10 Si 0.766 3.234 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.170 1.170 14 C -0.035 4.035 15 C -0.105 4.105 16 C -0.088 4.088 17 C -0.173 4.173 18 C 0.072 3.928 19 C -0.209 4.209 20 C -0.087 4.087 21 C 0.026 3.974 22 O -0.315 6.315 23 C 0.177 3.823 24 C -0.254 4.254 25 C -0.185 4.185 26 O -0.255 6.255 27 H 0.132 0.868 28 H 0.098 0.902 29 H 0.140 0.860 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.021 0.979 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.153 0.847 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.109 0.891 41 H 0.138 0.862 42 H 0.120 0.880 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.116 0.884 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 16.019 -13.294 -18.218 27.663 hybrid contribution -1.032 -0.699 1.179 1.715 sum 14.987 -13.993 -17.039 26.660 Atomic orbital electron populations 1.23930 0.96264 1.01811 0.99838 1.23569 0.96784 0.99537 1.00812 1.21167 0.94180 0.94417 0.93816 1.62115 1.13904 1.47018 1.02424 1.19968 0.92541 0.94981 0.88100 1.21208 1.24164 0.99198 1.09730 0.95059 1.25798 0.95006 0.98712 0.99346 1.70065 1.30373 1.29022 1.29856 0.85783 0.77684 0.80586 0.79336 1.19151 1.21103 1.17039 1.21053 0.92661 0.93382 0.96415 1.19720 0.96197 0.99738 0.94827 1.21023 0.93352 0.95444 0.98943 1.20671 1.02492 1.04501 0.89660 1.18681 0.90202 0.96404 0.87497 1.20415 0.97289 1.05041 0.98165 1.20776 0.98336 0.98798 0.90788 1.21641 0.97706 0.95971 0.82130 1.88273 1.20947 1.76813 1.45450 1.23692 0.82225 0.91480 0.84856 1.22809 1.03288 0.95074 1.04195 1.21749 1.00513 1.01802 0.94420 1.86246 1.58286 1.58366 1.22627 0.86802 0.90194 0.86010 0.93349 0.89971 0.97917 0.95713 0.92635 0.93088 0.90169 0.84678 0.84208 0.84305 0.89066 0.86204 0.88044 0.89239 0.92225 0.91690 0.88402 0.87661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.79 14.32 67.78 0.97 -4.82 16 2 C -0.19 -6.01 7.35 25.64 0.19 -5.82 16 3 C 0.09 3.45 5.33 85.56 0.46 3.91 16 4 N -0.53 -21.46 4.65 -909.96 -4.23 -25.69 16 5 C 0.17 8.00 3.67 85.56 0.31 8.31 16 6 C -0.50 -29.19 9.10 25.60 0.23 -28.95 16 7 H 0.03 2.06 7.86 -2.91 -0.02 2.03 16 8 C 0.01 0.47 5.47 84.65 0.46 0.93 16 9 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 10 Si 0.94 43.93 27.55 68.60 1.89 45.82 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.25 -10.61 6.43 99.48 0.64 -9.97 16 14 C 0.09 2.88 4.96 85.56 0.42 3.30 16 15 C -0.10 -2.96 4.89 -19.86 -0.10 -3.05 16 16 C -0.07 -1.93 9.69 22.25 0.22 -1.71 16 17 C -0.15 -4.13 9.97 22.38 0.22 -3.91 16 18 C 0.12 3.15 6.13 22.50 0.14 3.29 16 19 C -0.21 -5.13 5.24 -19.75 -0.10 -5.23 16 20 C -0.07 -1.72 7.56 22.27 0.17 -1.55 16 21 C 0.10 2.00 6.18 71.26 0.44 2.44 16 22 O -0.39 -8.82 10.48 -126.15 -1.32 -10.14 16 23 C 0.25 4.88 1.51 30.59 0.05 4.92 16 24 C -0.20 -2.78 8.23 71.98 0.59 -2.18 16 25 C -0.13 -1.73 9.24 71.98 0.67 -1.06 16 26 O -0.34 -8.62 9.87 -70.45 -0.70 -9.31 16 27 H 0.11 2.99 8.06 -2.91 -0.02 2.97 16 28 H 0.08 2.89 7.84 -2.91 -0.02 2.87 16 29 H 0.12 3.28 6.81 -2.91 -0.02 3.26 16 30 H 0.05 2.18 7.01 -2.39 -0.02 2.16 16 31 H 0.08 2.80 5.84 -2.39 -0.01 2.79 16 32 H 0.00 0.15 5.48 -2.38 -0.01 0.13 16 33 H 0.02 1.14 7.44 -2.39 -0.02 1.12 16 34 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 35 H 0.05 1.44 6.30 -2.38 -0.02 1.42 16 36 H 0.08 2.44 7.81 -2.39 -0.02 2.42 16 37 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 38 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 39 H 0.14 3.00 7.91 -2.91 -0.02 2.97 16 40 H 0.09 1.38 6.97 -2.39 -0.02 1.36 16 41 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 43 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 0.97 6.02 -2.39 -0.01 0.96 16 45 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -70.93 370.62 2.16 -68.78 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.88 Total: 21.57 kcal Atomic # 6 Polarization: -36.53 SS G_CDS: 5.34 Total: -31.19 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -3.93 Total: -85.52 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -2.02 Total: -19.45 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.89 Total: 45.82 kcal Total: -70.93 2.16 -68.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292837575.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.560 kcal (2) G-P(sol) polarization free energy of solvation -70.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds