Wall clock time and date at job start Tue Mar 31 2020 11:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47305 * 2 1 4 4 C 1.52998 * 109.34078 * 298.36299 * 3 2 1 5 5 N 1.46503 * 109.47065 * 304.34919 * 4 3 2 6 6 C 1.34775 * 119.99995 * 186.28163 * 5 4 3 7 7 O 1.21277 * 119.99860 * 359.71605 * 6 5 4 8 8 C 1.50701 * 120.00213 * 179.72642 * 6 5 4 9 9 C 1.52994 * 109.47035 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46797 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00475 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00030 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99774 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99958 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47170 * 59.99880 * 14 12 10 16 16 H 1.48501 * 109.46831 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47088 * 299.99516 * 14 12 10 18 18 O 1.42728 * 109.33526 * 58.04386 * 3 2 1 19 19 C 1.43218 * 113.11002 * 171.85462 * 18 3 2 20 20 C 1.52973 * 108.47237 * 289.26911 * 19 18 3 21 21 C 1.50748 * 109.76734 * 49.16673 * 20 19 18 22 22 C 1.38589 * 118.76726 * 163.22013 * 21 20 19 23 23 C 1.38071 * 120.27518 * 179.80860 * 22 21 20 24 24 C 1.38257 * 119.86664 * 0.02562 * 23 22 21 25 25 C 1.38047 * 119.89203 * 0.06909 * 24 23 22 26 26 C 1.37905 * 121.34818 * 343.16323 * 21 20 19 27 27 H 1.08999 * 109.46816 * 298.72665 * 1 2 3 28 28 H 1.09003 * 109.47044 * 58.72150 * 1 2 3 29 29 H 1.08996 * 109.47675 * 178.72503 * 1 2 3 30 30 H 1.09002 * 109.46962 * 240.00459 * 2 1 3 31 31 H 1.08998 * 109.47187 * 120.00636 * 2 1 3 32 32 H 1.08998 * 109.46808 * 184.34733 * 4 3 2 33 33 H 1.08994 * 109.46962 * 64.34884 * 4 3 2 34 34 H 0.97005 * 119.99786 * 5.99558 * 5 4 3 35 35 H 1.09000 * 109.46837 * 299.99366 * 8 6 5 36 36 H 1.08996 * 109.47410 * 59.99002 * 8 6 5 37 37 H 1.09000 * 109.47143 * 299.99610 * 9 8 6 38 38 H 1.09004 * 109.47534 * 60.00159 * 9 8 6 39 39 H 0.96996 * 120.00019 * 179.97438 * 13 12 10 40 40 H 1.08991 * 109.64155 * 48.96607 * 19 18 3 41 41 H 1.09007 * 109.63356 * 169.37182 * 19 18 3 42 42 H 1.08998 * 109.42296 * 169.26236 * 20 19 18 43 43 H 1.09004 * 109.41923 * 289.07945 * 20 19 18 44 44 H 1.07996 * 119.86444 * 359.83394 * 22 21 20 45 45 H 1.08000 * 120.06568 * 180.02562 * 23 22 21 46 46 H 1.07996 * 120.05673 * 180.02562 * 24 23 22 47 47 H 1.08008 * 119.85102 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5624 2.1488 -1.2703 5 7 1.9953 1.3873 -2.4447 6 6 1.7976 1.8855 -3.6813 7 8 1.2567 2.9618 -3.8221 8 6 2.2484 1.1050 -4.8890 9 6 1.9069 1.8877 -6.1585 10 6 2.3584 1.1074 -7.3662 11 1 2.8409 0.1494 -7.2409 12 6 2.1562 1.6171 -8.6314 13 7 1.5690 2.7839 -8.7841 14 14 2.7151 0.6496 -10.1284 15 1 2.0226 -0.6637 -10.1558 16 1 2.3838 1.4093 -11.3606 17 1 4.1828 0.4341 -10.0588 18 8 1.5256 2.1257 1.1427 19 6 2.0978 3.4258 1.3252 20 6 3.5523 3.2573 1.7683 21 6 4.2543 2.2854 0.8546 22 6 5.6398 2.2538 0.8524 23 6 6.3147 1.3730 0.0307 24 6 5.6054 0.5194 -0.7938 25 6 4.2253 0.5516 -0.7936 26 6 3.5463 1.4357 0.0308 27 1 -0.3633 0.4939 0.9012 28 1 -0.3633 0.5336 -0.8783 29 1 -0.3634 -1.0273 -0.0229 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.9879 3.1515 -1.3103 33 1 0.4746 2.2159 -1.2615 34 1 2.4279 0.5265 -2.3320 35 1 3.3257 0.9469 -4.8380 36 1 1.7403 0.1410 -4.9091 37 1 0.8296 2.0455 -6.2093 38 1 2.4149 2.8519 -6.1387 39 1 1.4272 3.1427 -9.6740 40 1 2.0628 3.9767 0.3854 41 1 1.5396 3.9678 2.0886 42 1 4.0575 4.2223 1.7281 43 1 3.5782 2.8779 2.7898 44 1 6.1940 2.9205 1.4963 45 1 7.3945 1.3510 0.0320 46 1 6.1302 -0.1710 -1.4374 47 1 3.6719 -0.1159 -1.4376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293344001.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:27 Heat of formation + Delta-G solvation = -68.710517 kcal Electronic energy + Delta-G solvation = -27215.714078 eV Core-core repulsion = 23555.814846 eV Total energy + Delta-G solvation = -3659.899232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.24282 -38.98924 -37.97828 -35.86103 -33.45355 -33.27347 -32.51715 -31.18353 -30.95486 -29.44695 -27.77411 -25.58565 -24.54911 -24.10299 -23.12199 -21.59564 -20.96189 -19.73435 -19.44203 -17.56159 -17.05062 -16.61037 -16.16902 -15.65878 -15.53837 -15.37679 -14.80768 -14.70667 -14.39938 -14.32032 -14.01446 -13.83594 -13.74459 -13.20209 -13.01095 -12.86129 -12.72904 -12.23585 -12.12341 -12.08441 -11.95448 -11.78258 -11.55270 -11.15580 -11.07257 -10.91017 -10.86678 -10.65106 -10.59918 -9.94223 -9.84552 -9.65518 -9.17796 -9.01561 -9.00426 -8.84666 -8.72799 -8.30543 -5.94774 -3.99265 1.10055 1.15463 3.24016 3.29085 3.35016 3.39704 3.41324 3.46966 3.74554 4.22590 4.35390 4.47922 4.48808 4.54344 4.61284 4.83799 4.89361 4.92292 5.05134 5.15629 5.21781 5.30876 5.34109 5.39991 5.42863 5.51675 5.54594 5.57223 5.69960 5.76504 5.79303 5.82022 5.87530 5.99913 6.18740 6.23225 6.23875 6.26212 6.30191 6.33382 6.64628 6.75660 6.89423 6.90587 7.75190 7.85471 7.87813 8.08629 8.39849 8.78835 9.09121 9.64068 11.16162 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016307 B = 0.003167 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.623120 B = 8838.642805 C = 9509.145922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C 0.151 3.849 4 C 0.103 3.897 5 N -0.738 5.738 6 C 0.510 3.490 7 O -0.533 6.533 8 C -0.130 4.130 9 C 0.038 3.962 10 C -0.528 4.528 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 O -0.355 6.355 19 C 0.051 3.949 20 C -0.114 4.114 21 C -0.072 4.072 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.105 4.105 26 C -0.103 4.103 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.393 0.607 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.024 0.976 38 H 0.023 0.977 39 H 0.261 0.739 40 H 0.062 0.938 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.126 0.874 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.645 -4.431 25.208 26.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C 0.111 3.889 4 C -0.022 4.022 5 N -0.397 5.397 6 C 0.298 3.702 7 O -0.408 6.408 8 C -0.170 4.170 9 C 0.000 4.000 10 C -0.566 4.566 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.528 5.528 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 O -0.273 6.273 19 C -0.026 4.026 20 C -0.151 4.151 21 C -0.073 4.073 22 C -0.137 4.137 23 C -0.134 4.134 24 C -0.136 4.136 25 C -0.123 4.123 26 C -0.104 4.104 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.231 0.769 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.120 0.880 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.025 -3.576 25.095 25.841 hybrid contribution 0.912 -0.696 -0.955 1.493 sum 5.937 -4.272 24.139 25.223 Atomic orbital electron populations 1.21762 0.94382 1.01859 1.02918 1.21615 0.97522 0.92507 1.02768 1.20389 0.88491 0.93817 0.86226 1.21744 1.00453 0.95865 0.84131 1.46332 1.64184 1.23602 1.05560 1.21569 0.77781 0.86651 0.84157 1.90667 1.41839 1.22141 1.86176 1.21868 1.01438 0.99972 0.93701 1.18887 0.97884 0.95042 0.88163 1.21185 1.39352 1.04933 0.91127 0.92669 1.25023 0.95265 0.94998 0.99058 1.69988 1.42407 1.17694 1.22733 0.86655 0.79078 0.79988 0.82218 1.20245 1.21290 1.20264 1.88126 1.64450 1.29540 1.45145 1.22733 0.92888 0.85197 1.01789 1.21120 0.96281 0.98671 0.99034 1.19468 0.93624 0.96970 0.97194 1.21045 0.93373 0.99502 0.99764 1.21127 0.99934 0.95925 0.96378 1.21129 0.94001 0.99368 0.99061 1.21040 0.94575 0.98458 0.98252 1.20001 0.95351 0.97281 0.97725 0.91728 0.92054 0.92506 0.90507 0.90731 0.91377 0.90435 0.76926 0.90310 0.90237 0.95793 0.95862 0.92903 0.91950 0.87976 0.89663 0.89710 0.86049 0.85921 0.85590 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.45 37.16 0.35 -1.13 16 2 C -0.11 -1.04 4.54 -26.73 -0.12 -1.16 16 3 C 0.15 1.68 0.55 -91.79 -0.05 1.63 16 4 C 0.10 1.40 4.02 -4.04 -0.02 1.38 16 5 N -0.74 -10.75 4.76 -60.30 -0.29 -11.03 16 6 C 0.51 10.00 7.83 -10.99 -0.09 9.91 16 7 O -0.53 -12.82 15.97 5.56 0.09 -12.73 16 8 C -0.13 -2.66 5.64 -27.89 -0.16 -2.82 16 9 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 10 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 11 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -27.58 13.29 55.43 0.74 -26.85 16 14 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 O -0.35 -3.94 9.46 -35.23 -0.33 -4.27 16 19 C 0.05 0.46 6.72 37.14 0.25 0.71 16 20 C -0.11 -0.96 6.00 -27.87 -0.17 -1.13 16 21 C -0.07 -0.77 5.78 -104.59 -0.60 -1.37 16 22 C -0.12 -1.14 9.67 -39.51 -0.38 -1.52 16 23 C -0.12 -1.09 10.05 -39.64 -0.40 -1.49 16 24 C -0.12 -1.17 10.05 -39.64 -0.40 -1.57 16 25 C -0.11 -1.11 8.08 -39.50 -0.32 -1.43 16 26 C -0.10 -1.16 4.73 -104.61 -0.49 -1.66 16 27 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 28 H 0.06 0.67 6.49 -51.93 -0.34 0.34 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.68 5.32 -51.93 -0.28 0.40 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.04 6.65 -51.93 -0.35 0.69 16 33 H 0.08 1.11 6.66 -51.93 -0.35 0.76 16 34 H 0.39 4.67 4.32 -40.82 -0.18 4.50 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.06 0.63 6.30 -51.93 -0.33 0.30 16 41 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 46 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.12 1.12 4.79 -52.48 -0.25 0.87 16 LS Contribution 367.87 15.07 5.54 5.54 Total: -1.00 -34.86 367.87 -9.46 -44.33 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.07 Total: 2.78 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -3.12 Total: -14.47 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.45 Total: -37.88 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.24 Total: -17.00 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.86 -9.46 -44.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293344001.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.385 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds