Wall clock time and date at job start Tue Mar 31 2020 11:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47305 * 2 1 4 4 C 1.52998 * 109.34078 * 298.36299 * 3 2 1 5 5 N 1.46503 * 109.47065 * 304.34919 * 4 3 2 6 6 C 1.34775 * 119.99995 * 186.28163 * 5 4 3 7 7 O 1.21277 * 119.99860 * 359.71605 * 6 5 4 8 8 C 1.50701 * 120.00213 * 179.72642 * 6 5 4 9 9 C 1.52994 * 109.47035 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46797 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00475 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00030 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99774 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99958 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47170 * 59.99880 * 14 12 10 16 16 H 1.48501 * 109.46831 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47088 * 299.99516 * 14 12 10 18 18 O 1.42728 * 109.33526 * 58.04386 * 3 2 1 19 19 C 1.43218 * 113.11002 * 171.85462 * 18 3 2 20 20 C 1.52973 * 108.47237 * 289.26911 * 19 18 3 21 21 C 1.50748 * 109.76734 * 49.16673 * 20 19 18 22 22 C 1.38589 * 118.76726 * 163.22013 * 21 20 19 23 23 C 1.38071 * 120.27518 * 179.80860 * 22 21 20 24 24 C 1.38257 * 119.86664 * 0.02562 * 23 22 21 25 25 C 1.38047 * 119.89203 * 0.06909 * 24 23 22 26 26 C 1.37905 * 121.34818 * 343.16323 * 21 20 19 27 27 H 1.08999 * 109.46816 * 298.72665 * 1 2 3 28 28 H 1.09003 * 109.47044 * 58.72150 * 1 2 3 29 29 H 1.08996 * 109.47675 * 178.72503 * 1 2 3 30 30 H 1.09002 * 109.46962 * 240.00459 * 2 1 3 31 31 H 1.08998 * 109.47187 * 120.00636 * 2 1 3 32 32 H 1.08998 * 109.46808 * 184.34733 * 4 3 2 33 33 H 1.08994 * 109.46962 * 64.34884 * 4 3 2 34 34 H 0.97005 * 119.99786 * 5.99558 * 5 4 3 35 35 H 1.09000 * 109.46837 * 299.99366 * 8 6 5 36 36 H 1.08996 * 109.47410 * 59.99002 * 8 6 5 37 37 H 1.09000 * 109.47143 * 299.99610 * 9 8 6 38 38 H 1.09004 * 109.47534 * 60.00159 * 9 8 6 39 39 H 0.96996 * 120.00019 * 179.97438 * 13 12 10 40 40 H 1.08991 * 109.64155 * 48.96607 * 19 18 3 41 41 H 1.09007 * 109.63356 * 169.37182 * 19 18 3 42 42 H 1.08998 * 109.42296 * 169.26236 * 20 19 18 43 43 H 1.09004 * 109.41923 * 289.07945 * 20 19 18 44 44 H 1.07996 * 119.86444 * 359.83394 * 22 21 20 45 45 H 1.08000 * 120.06568 * 180.02562 * 23 22 21 46 46 H 1.07996 * 120.05673 * 180.02562 * 24 23 22 47 47 H 1.08008 * 119.85102 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5624 2.1488 -1.2703 5 7 1.9953 1.3873 -2.4447 6 6 1.7976 1.8855 -3.6813 7 8 1.2567 2.9618 -3.8221 8 6 2.2484 1.1050 -4.8890 9 6 1.9069 1.8877 -6.1585 10 6 2.3584 1.1074 -7.3662 11 1 2.8409 0.1494 -7.2409 12 6 2.1562 1.6171 -8.6314 13 7 1.5690 2.7839 -8.7841 14 14 2.7151 0.6496 -10.1284 15 1 2.0226 -0.6637 -10.1558 16 1 2.3838 1.4093 -11.3606 17 1 4.1828 0.4341 -10.0588 18 8 1.5256 2.1257 1.1427 19 6 2.0978 3.4258 1.3252 20 6 3.5523 3.2573 1.7683 21 6 4.2543 2.2854 0.8546 22 6 5.6398 2.2538 0.8524 23 6 6.3147 1.3730 0.0307 24 6 5.6054 0.5194 -0.7938 25 6 4.2253 0.5516 -0.7936 26 6 3.5463 1.4357 0.0308 27 1 -0.3633 0.4939 0.9012 28 1 -0.3633 0.5336 -0.8783 29 1 -0.3634 -1.0273 -0.0229 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.9879 3.1515 -1.3103 33 1 0.4746 2.2159 -1.2615 34 1 2.4279 0.5265 -2.3320 35 1 3.3257 0.9469 -4.8380 36 1 1.7403 0.1410 -4.9091 37 1 0.8296 2.0455 -6.2093 38 1 2.4149 2.8519 -6.1387 39 1 1.4272 3.1427 -9.6740 40 1 2.0628 3.9767 0.3854 41 1 1.5396 3.9678 2.0886 42 1 4.0575 4.2223 1.7281 43 1 3.5782 2.8779 2.7898 44 1 6.1940 2.9205 1.4963 45 1 7.3945 1.3510 0.0320 46 1 6.1302 -0.1710 -1.4374 47 1 3.6719 -0.1159 -1.4376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293344001.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:26 Heat of formation + Delta-G solvation = -90.381427 kcal Electronic energy + Delta-G solvation = -27216.653799 eV Core-core repulsion = 23555.814846 eV Total energy + Delta-G solvation = -3660.838953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.11924 -40.47699 -38.77985 -36.91393 -35.56403 -34.40745 -33.37412 -32.93199 -31.92163 -30.21862 -29.06720 -27.31359 -25.57782 -24.83106 -24.09707 -23.33079 -21.74057 -21.26842 -20.33671 -18.92137 -18.30893 -17.75098 -17.49511 -16.87465 -16.74355 -16.45319 -16.32468 -15.94339 -15.82776 -15.10662 -14.91478 -14.85976 -14.68073 -14.35938 -14.21637 -14.10709 -13.92260 -13.58764 -13.37312 -13.24526 -12.95128 -12.78409 -12.75877 -12.55681 -12.50783 -12.30622 -11.91825 -11.87315 -11.65276 -11.63832 -11.43722 -11.32139 -10.86446 -10.60155 -10.55544 -10.14370 -9.74202 -9.56226 -8.17081 -6.31343 0.34125 0.41841 1.42698 1.47326 1.54969 1.67872 2.07582 2.44178 2.67095 2.84133 3.15878 3.39868 3.57618 3.60993 3.75450 3.87853 3.97831 4.12248 4.20957 4.24429 4.29349 4.40042 4.44133 4.49527 4.55124 4.55556 4.59572 4.63533 4.67683 4.80238 4.86307 4.96845 5.03397 5.05091 5.06253 5.12967 5.19350 5.34200 5.41169 5.49510 5.50499 5.58445 5.59198 5.62874 5.85557 6.03891 6.06940 6.17863 6.49297 6.86703 7.27999 7.38942 8.95468 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016307 B = 0.003167 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.623120 B = 8838.642805 C = 9509.145922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C 0.160 3.840 4 C 0.105 3.895 5 N -0.710 5.710 6 C 0.512 3.488 7 O -0.587 6.587 8 C -0.119 4.119 9 C 0.043 3.957 10 C -0.544 4.544 11 H 0.077 0.923 12 C -0.007 4.007 13 N -0.938 5.938 14 Si 0.974 3.026 15 H -0.262 1.262 16 H -0.289 1.289 17 H -0.262 1.262 18 O -0.363 6.363 19 C 0.044 3.956 20 C -0.110 4.110 21 C -0.089 4.089 22 C -0.126 4.126 23 C -0.121 4.121 24 C -0.128 4.128 25 C -0.118 4.118 26 C -0.124 4.124 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.410 0.590 35 H 0.104 0.896 36 H 0.107 0.893 37 H -0.017 1.017 38 H -0.020 1.020 39 H 0.263 0.737 40 H 0.046 0.954 41 H 0.125 0.875 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.143 0.857 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.463 -6.785 26.157 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C 0.120 3.880 4 C -0.019 4.019 5 N -0.368 5.368 6 C 0.301 3.699 7 O -0.467 6.467 8 C -0.159 4.159 9 C 0.005 3.995 10 C -0.581 4.581 11 H 0.095 0.905 12 C -0.204 4.204 13 N -0.578 5.578 14 Si 0.798 3.202 15 H -0.186 1.186 16 H -0.214 1.214 17 H -0.186 1.186 18 O -0.281 6.281 19 C -0.032 4.032 20 C -0.147 4.147 21 C -0.089 4.089 22 C -0.144 4.144 23 C -0.139 4.139 24 C -0.146 4.146 25 C -0.136 4.136 26 C -0.124 4.124 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.251 0.749 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.001 0.999 38 H -0.001 1.001 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.143 0.857 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.160 0.840 45 H 0.162 0.838 46 H 0.161 0.839 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.871 -5.985 26.101 27.646 hybrid contribution 0.357 0.091 -1.160 1.217 sum 7.228 -5.894 24.942 26.628 Atomic orbital electron populations 1.21733 0.94521 1.02502 1.01911 1.21661 0.97329 0.91634 1.03701 1.20273 0.88868 0.94138 0.84732 1.21788 0.99857 0.95354 0.84951 1.45989 1.62554 1.23913 1.04359 1.21397 0.77297 0.85798 0.85443 1.90654 1.44556 1.24445 1.87032 1.21651 1.03323 0.99912 0.90978 1.18675 0.94704 0.94209 0.91868 1.21684 1.39101 1.05720 0.91632 0.90465 1.26143 0.95141 0.96003 1.03119 1.70176 1.44015 1.19972 1.23633 0.85373 0.79264 0.78496 0.77108 1.18615 1.21427 1.18650 1.88114 1.64943 1.30326 1.44738 1.22920 0.94062 0.84460 1.01806 1.21144 0.95397 0.99065 0.99126 1.19816 0.94401 0.97206 0.97503 1.21351 0.93200 0.99820 1.00028 1.21478 1.01173 0.95423 0.95833 1.21427 0.93928 0.99833 0.99442 1.21233 0.95206 0.98697 0.98502 1.20107 0.95162 0.98328 0.98841 0.92059 0.93760 0.90993 0.89522 0.89775 0.93213 0.91316 0.74932 0.87762 0.87438 0.99891 1.00107 0.92882 0.93517 0.85741 0.88202 0.88512 0.84039 0.83843 0.83923 0.85088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.45 71.98 0.68 -2.08 16 2 C -0.11 -1.90 4.54 30.60 0.14 -1.76 16 3 C 0.16 3.46 0.55 -11.55 -0.01 3.45 16 4 C 0.11 2.91 4.02 86.38 0.35 3.26 16 5 N -0.71 -20.40 4.76 -463.07 -2.20 -22.61 16 6 C 0.51 20.40 7.83 87.66 0.69 21.09 16 7 O -0.59 -29.72 15.97 -3.02 -0.05 -29.77 16 8 C -0.12 -4.82 5.64 29.85 0.17 -4.65 16 9 C 0.04 2.42 4.26 29.85 0.13 2.55 16 10 C -0.54 -31.00 9.11 25.60 0.23 -30.76 16 11 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 12 C -0.01 -0.39 5.46 84.66 0.46 0.08 16 13 N -0.94 -59.91 13.29 21.45 0.28 -59.62 16 14 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 15 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 16 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 18 O -0.36 -7.82 9.46 -148.98 -1.41 -9.23 16 19 C 0.04 0.77 6.72 71.97 0.48 1.26 16 20 C -0.11 -1.69 6.00 29.85 0.18 -1.51 16 21 C -0.09 -1.76 5.78 -19.84 -0.11 -1.87 16 22 C -0.13 -2.17 9.67 22.31 0.22 -1.95 16 23 C -0.12 -2.02 10.05 22.23 0.22 -1.80 16 24 C -0.13 -2.28 10.05 22.23 0.22 -2.06 16 25 C -0.12 -2.30 8.08 22.32 0.18 -2.12 16 26 C -0.12 -2.65 4.73 -19.86 -0.09 -2.74 16 27 H 0.06 1.16 7.67 -2.39 -0.02 1.14 16 28 H 0.04 0.96 6.49 -2.39 -0.02 0.95 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.34 5.32 -2.39 -0.01 1.33 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.58 6.65 -2.39 -0.02 1.57 16 33 H 0.07 2.04 6.66 -2.39 -0.02 2.03 16 34 H 0.41 9.05 4.32 -92.70 -0.40 8.65 16 35 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 36 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 37 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 38 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 39 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 40 H 0.05 0.97 6.30 -2.39 -0.02 0.95 16 41 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.10 1.25 8.14 -2.39 -0.02 1.24 16 44 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 46 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 47 H 0.13 2.12 4.79 -2.91 -0.01 2.11 16 Total: -1.00 -78.82 367.87 3.36 -75.46 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.58 Total: 21.09 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 4.13 Total: -21.63 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -1.92 Total: -82.23 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -1.46 Total: -39.00 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -78.82 3.36 -75.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293344001.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.921 kcal (2) G-P(sol) polarization free energy of solvation -78.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds