Wall clock time and date at job start Tue Mar 31 2020 11:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47200 * 2 1 4 4 C 1.38233 * 120.00650 * 89.99438 * 3 2 1 5 5 C 1.38230 * 120.00577 * 179.97438 * 4 3 2 6 6 C 1.38238 * 119.99961 * 359.96360 * 5 4 3 7 7 C 1.50693 * 120.00498 * 179.97438 * 6 5 4 8 8 H 1.09008 * 109.50939 * 25.10023 * 7 6 5 9 9 C 1.53297 * 109.51596 * 265.00321 * 7 6 5 10 10 N 1.47151 * 108.38713 * 187.71995 * 9 7 6 11 11 C 1.34777 * 120.98263 * 230.51321 * 10 9 7 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27616 * 11 10 9 14 14 C 1.52996 * 109.47159 * 179.72352 * 13 11 10 15 15 C 1.50697 * 109.47491 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99437 * 359.97438 * 15 14 13 17 17 C 1.37869 * 120.00278 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00194 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00110 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47052 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47156 * 119.99884 * 19 17 15 22 22 H 1.48498 * 109.47200 * 239.99869 * 19 17 15 23 23 C 1.47151 * 118.03528 * 50.78151 * 10 9 7 24 24 C 1.53717 * 108.16446 * 309.16055 * 23 10 9 25 25 O 1.42962 * 109.55650 * 145.22586 * 7 6 5 26 26 C 1.38235 * 119.99670 * 0.27254 * 6 5 4 27 27 C 1.38238 * 119.99655 * 269.97872 * 3 2 1 28 28 H 1.09005 * 109.47233 * 300.00388 * 1 2 3 29 29 H 1.09007 * 109.46816 * 59.99919 * 1 2 3 30 30 H 1.08997 * 109.47467 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47121 * 239.99746 * 2 1 3 32 32 H 1.09005 * 109.46879 * 119.99546 * 2 1 3 33 33 H 1.07997 * 119.99502 * 359.97438 * 4 3 2 34 34 H 1.07996 * 120.00423 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.68246 * 67.99376 * 9 7 6 36 36 H 1.09002 * 109.67874 * 307.44199 * 9 7 6 37 37 H 1.09004 * 109.46965 * 299.72211 * 13 11 10 38 38 H 1.08994 * 109.46990 * 59.72065 * 13 11 10 39 39 H 1.09004 * 109.47066 * 299.99797 * 14 13 11 40 40 H 1.09000 * 109.47234 * 59.99288 * 14 13 11 41 41 H 0.97004 * 120.00291 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.67944 * 68.93927 * 23 10 9 43 43 H 1.09001 * 109.68346 * 189.49269 * 23 10 9 44 44 H 1.08998 * 109.65611 * 292.57311 * 24 23 10 45 45 H 1.08994 * 109.48424 * 172.39690 * 24 23 10 46 46 H 1.08003 * 120.00015 * 179.72481 * 26 6 5 47 47 H 1.08000 * 120.00207 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7240 3.3757 1.1970 6 6 2.9557 4.0268 -0.0002 7 6 3.4580 5.4476 -0.0003 8 1 3.9893 5.6460 0.9306 9 6 2.2718 6.4102 -0.1279 10 7 2.7971 7.7722 -0.3127 11 6 2.3601 8.7938 0.4501 12 8 1.5214 8.5975 1.3038 13 6 2.9088 10.1812 0.2376 14 6 2.2463 11.1478 1.2212 15 6 2.7953 12.5351 1.0093 16 1 3.5425 12.7098 0.2493 17 6 2.3439 13.5813 1.7855 18 7 1.4336 13.3687 2.7106 19 14 3.0250 15.3008 1.5232 20 1 4.0301 15.2737 0.4304 21 1 1.9187 16.2208 1.1561 22 1 3.6682 15.7747 2.7750 23 6 3.8092 7.9871 -1.3591 24 6 4.9245 6.9467 -1.1679 25 8 4.3431 5.6421 -1.1060 26 6 2.7207 3.3767 -1.1973 27 6 2.2632 2.0722 -1.1972 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0822 1.5637 2.1323 34 1 2.9035 3.8850 2.1323 35 1 1.6671 6.3697 0.7780 36 1 1.6637 6.1313 -0.9885 37 1 3.9861 10.1753 0.4040 38 1 2.7005 10.5019 -0.7830 39 1 1.1690 11.1537 1.0549 40 1 2.4545 10.8270 2.2419 41 1 1.1157 14.1048 3.2565 42 1 3.3533 7.8643 -2.3415 43 1 4.2231 8.9914 -1.2688 44 1 5.4611 7.1505 -0.2412 45 1 5.6168 6.9973 -2.0082 46 1 2.8975 3.8869 -2.1326 47 1 2.0839 1.5629 -2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293408147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:28 Heat of formation + Delta-G solvation = -71.160879 kcal Electronic energy + Delta-G solvation = -25960.825373 eV Core-core repulsion = 22300.819886 eV Total energy + Delta-G solvation = -3660.005487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.47764 -39.42781 -38.08811 -34.88701 -34.48698 -33.54207 -32.05647 -31.11773 -30.91838 -29.17340 -27.65081 -25.75254 -24.54383 -23.45461 -22.92659 -22.22335 -21.11629 -20.52475 -18.69529 -17.29193 -16.82824 -16.52985 -15.95457 -15.81985 -15.58357 -15.29742 -15.11349 -14.76826 -14.46939 -14.41695 -13.90435 -13.85996 -13.56465 -13.44645 -13.38356 -12.85766 -12.59302 -12.23419 -12.17444 -12.03187 -11.87741 -11.65834 -11.49261 -11.14105 -11.11712 -11.05117 -10.96861 -10.76007 -10.59084 -10.23368 -10.00282 -9.65567 -9.22941 -9.08896 -9.05524 -8.84106 -8.37843 -8.31445 -5.98269 -4.02923 1.06873 1.24178 3.08308 3.13674 3.31000 3.38150 3.40748 3.41776 3.62943 4.44663 4.44849 4.56297 4.61817 4.67803 4.80062 4.84669 4.88461 5.01580 5.03939 5.09818 5.15432 5.22955 5.28831 5.32468 5.36753 5.37476 5.47912 5.56513 5.62831 5.67042 5.74033 5.77940 5.85595 5.88980 5.91704 6.14044 6.16281 6.21872 6.38106 6.41475 6.56468 6.80205 6.84133 6.96967 7.64291 7.71998 7.82710 8.04313 8.35211 8.65819 9.05480 9.60828 11.12685 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027006 B = 0.002286 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.565313 B =12245.612401 C =12922.487475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.081 4.081 4 C -0.119 4.119 5 C -0.102 4.102 6 C -0.084 4.084 7 C 0.121 3.879 8 H 0.072 0.928 9 C 0.090 3.910 10 N -0.630 5.630 11 C 0.514 3.486 12 O -0.530 6.530 13 C -0.128 4.128 14 C 0.036 3.964 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.074 3.926 24 C 0.048 3.952 25 O -0.374 6.374 26 C -0.087 4.087 27 C -0.122 4.122 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.260 0.740 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.058 0.942 45 H 0.107 0.893 46 H 0.128 0.872 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.759 -25.746 -9.297 27.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.081 4.081 4 C -0.137 4.137 5 C -0.121 4.121 6 C -0.085 4.085 7 C 0.063 3.937 8 H 0.089 0.911 9 C -0.033 4.033 10 N -0.367 5.367 11 C 0.305 3.695 12 O -0.405 6.405 13 C -0.167 4.167 14 C -0.001 4.001 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.050 4.050 24 C -0.029 4.029 25 O -0.293 6.293 26 C -0.105 4.105 27 C -0.140 4.140 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.120 0.880 44 H 0.076 0.924 45 H 0.125 0.875 46 H 0.146 0.854 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.216 -25.869 -8.806 27.650 hybrid contribution 0.346 1.251 0.010 1.297 sum 4.562 -24.619 -8.796 26.538 Atomic orbital electron populations 1.21756 0.94637 1.01672 1.02418 1.20548 0.96257 0.92670 1.02769 1.19934 0.98704 0.96233 0.93272 1.20946 1.00451 0.94651 0.97618 1.20971 0.99042 0.94663 0.97379 1.19461 1.00971 0.94186 0.93868 1.21201 0.90678 0.91519 0.90302 0.91056 1.22129 0.95712 0.81504 1.03938 1.48395 1.43082 1.08151 1.37056 1.21658 0.81224 0.87045 0.79609 1.90665 1.32147 1.84364 1.33330 1.21891 1.01293 0.90114 1.03448 1.18917 0.96205 0.91473 0.93510 1.21239 1.23387 0.93061 1.18825 0.92534 1.25032 0.95085 0.99126 0.95189 1.70008 1.29506 1.31802 1.21451 0.86529 0.78848 0.84547 0.77993 1.19739 1.21003 1.21014 1.22490 0.89823 1.01045 0.91624 1.23095 0.94650 0.82401 1.02787 1.87928 1.61775 1.31627 1.47989 1.20984 0.97163 0.94364 0.97983 1.21023 1.00543 0.94929 0.97497 0.92441 0.92484 0.92438 0.91091 0.91077 0.85966 0.85775 0.88137 0.91142 0.90228 0.90156 0.95799 0.95826 0.92975 0.90755 0.87959 0.92350 0.87506 0.85446 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.57 16 2 C -0.09 -0.57 6.06 -27.88 -0.17 -0.73 16 3 C -0.08 -0.72 5.13 -104.62 -0.54 -1.26 16 4 C -0.12 -1.11 9.70 -39.59 -0.38 -1.49 16 5 C -0.10 -1.07 9.68 -39.58 -0.38 -1.45 16 6 C -0.08 -0.95 5.01 -104.63 -0.52 -1.47 16 7 C 0.12 1.47 2.99 -27.73 -0.08 1.38 16 8 H 0.07 0.89 8.05 -51.92 -0.42 0.47 16 9 C 0.09 1.26 5.91 -3.53 -0.02 1.24 16 10 N -0.63 -9.58 3.01 -172.02 -0.52 -10.10 16 11 C 0.51 10.14 7.71 -10.98 -0.08 10.06 16 12 O -0.53 -12.67 15.45 5.55 0.09 -12.59 16 13 C -0.13 -2.59 4.01 -27.88 -0.11 -2.70 16 14 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 15 C -0.53 -14.87 9.11 -34.44 -0.31 -15.19 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.40 13.29 55.43 0.74 -26.66 16 19 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.07 0.84 6.57 -3.31 -0.02 0.82 16 24 C 0.05 0.48 7.00 37.53 0.26 0.74 16 25 O -0.37 -4.39 9.54 -35.23 -0.34 -4.72 16 26 C -0.09 -0.91 9.35 -39.58 -0.37 -1.28 16 27 C -0.12 -1.12 9.70 -39.58 -0.38 -1.51 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.10 1.57 7.08 -51.93 -0.37 1.20 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.45 7.67 -51.93 -0.40 1.06 16 38 H 0.08 1.49 8.00 -51.93 -0.42 1.07 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.10 1.10 6.06 -51.93 -0.31 0.78 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.13 1.28 7.63 -52.48 -0.40 0.88 16 47 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 383.78 15.07 5.78 5.78 Total: -1.00 -34.31 383.78 -10.01 -44.32 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -7.76 Total: -1.60 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -2.97 Total: -10.99 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.22 Total: -36.77 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.25 Total: -17.31 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.31 -10.01 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293408147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.841 kcal (2) G-P(sol) polarization free energy of solvation -34.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds