Wall clock time and date at job start Tue Mar 31 2020 11:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47200 * 2 1 4 4 C 1.38233 * 120.00650 * 89.99438 * 3 2 1 5 5 C 1.38230 * 120.00577 * 179.97438 * 4 3 2 6 6 C 1.38238 * 119.99961 * 359.96360 * 5 4 3 7 7 C 1.50693 * 120.00498 * 179.97438 * 6 5 4 8 8 H 1.09008 * 109.50939 * 25.10023 * 7 6 5 9 9 C 1.53297 * 109.51596 * 265.00321 * 7 6 5 10 10 N 1.47151 * 108.38713 * 187.71995 * 9 7 6 11 11 C 1.34777 * 120.98263 * 230.51321 * 10 9 7 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27616 * 11 10 9 14 14 C 1.52996 * 109.47159 * 179.72352 * 13 11 10 15 15 C 1.50697 * 109.47491 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99437 * 359.97438 * 15 14 13 17 17 C 1.37869 * 120.00278 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00194 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00110 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47052 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47156 * 119.99884 * 19 17 15 22 22 H 1.48498 * 109.47200 * 239.99869 * 19 17 15 23 23 C 1.47151 * 118.03528 * 50.78151 * 10 9 7 24 24 C 1.53717 * 108.16446 * 309.16055 * 23 10 9 25 25 O 1.42962 * 109.55650 * 145.22586 * 7 6 5 26 26 C 1.38235 * 119.99670 * 0.27254 * 6 5 4 27 27 C 1.38238 * 119.99655 * 269.97872 * 3 2 1 28 28 H 1.09005 * 109.47233 * 300.00388 * 1 2 3 29 29 H 1.09007 * 109.46816 * 59.99919 * 1 2 3 30 30 H 1.08997 * 109.47467 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47121 * 239.99746 * 2 1 3 32 32 H 1.09005 * 109.46879 * 119.99546 * 2 1 3 33 33 H 1.07997 * 119.99502 * 359.97438 * 4 3 2 34 34 H 1.07996 * 120.00423 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.68246 * 67.99376 * 9 7 6 36 36 H 1.09002 * 109.67874 * 307.44199 * 9 7 6 37 37 H 1.09004 * 109.46965 * 299.72211 * 13 11 10 38 38 H 1.08994 * 109.46990 * 59.72065 * 13 11 10 39 39 H 1.09004 * 109.47066 * 299.99797 * 14 13 11 40 40 H 1.09000 * 109.47234 * 59.99288 * 14 13 11 41 41 H 0.97004 * 120.00291 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.67944 * 68.93927 * 23 10 9 43 43 H 1.09001 * 109.68346 * 189.49269 * 23 10 9 44 44 H 1.08998 * 109.65611 * 292.57311 * 24 23 10 45 45 H 1.08994 * 109.48424 * 172.39690 * 24 23 10 46 46 H 1.08003 * 120.00015 * 179.72481 * 26 6 5 47 47 H 1.08000 * 120.00207 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7240 3.3757 1.1970 6 6 2.9557 4.0268 -0.0002 7 6 3.4580 5.4476 -0.0003 8 1 3.9893 5.6460 0.9306 9 6 2.2718 6.4102 -0.1279 10 7 2.7971 7.7722 -0.3127 11 6 2.3601 8.7938 0.4501 12 8 1.5214 8.5975 1.3038 13 6 2.9088 10.1812 0.2376 14 6 2.2463 11.1478 1.2212 15 6 2.7953 12.5351 1.0093 16 1 3.5425 12.7098 0.2493 17 6 2.3439 13.5813 1.7855 18 7 1.4336 13.3687 2.7106 19 14 3.0250 15.3008 1.5232 20 1 4.0301 15.2737 0.4304 21 1 1.9187 16.2208 1.1561 22 1 3.6682 15.7747 2.7750 23 6 3.8092 7.9871 -1.3591 24 6 4.9245 6.9467 -1.1679 25 8 4.3431 5.6421 -1.1060 26 6 2.7207 3.3767 -1.1973 27 6 2.2632 2.0722 -1.1972 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0822 1.5637 2.1323 34 1 2.9035 3.8850 2.1323 35 1 1.6671 6.3697 0.7780 36 1 1.6637 6.1313 -0.9885 37 1 3.9861 10.1753 0.4040 38 1 2.7005 10.5019 -0.7830 39 1 1.1690 11.1537 1.0549 40 1 2.4545 10.8270 2.2419 41 1 1.1157 14.1048 3.2565 42 1 3.3533 7.8643 -2.3415 43 1 4.2231 8.9914 -1.2688 44 1 5.4611 7.1505 -0.2412 45 1 5.6168 6.9973 -2.0082 46 1 2.8975 3.8869 -2.1326 47 1 2.0839 1.5629 -2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293408147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:27 Heat of formation + Delta-G solvation = -91.090952 kcal Electronic energy + Delta-G solvation = -25961.689606 eV Core-core repulsion = 22300.819886 eV Total energy + Delta-G solvation = -3660.869720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.57977 -40.43718 -39.25283 -35.92405 -35.65309 -35.38328 -33.28225 -32.51047 -31.85847 -29.99600 -29.00030 -27.35250 -25.64288 -24.35034 -23.72468 -23.57137 -22.45416 -21.33818 -20.06545 -18.94791 -17.99161 -17.62491 -17.35330 -16.98004 -16.74772 -16.43636 -16.23877 -16.11654 -15.72212 -15.29366 -14.96902 -14.80297 -14.52934 -14.48865 -14.23594 -14.12313 -13.90237 -13.62989 -13.56416 -13.20843 -12.88631 -12.84584 -12.59496 -12.49325 -12.41520 -12.16282 -11.97336 -11.86981 -11.68833 -11.64782 -11.58686 -11.30272 -11.25786 -10.74788 -10.59236 -9.85036 -9.78906 -9.39299 -8.19212 -6.33540 0.29775 0.48937 1.41990 1.43455 1.56722 1.58447 1.84658 2.42033 2.56608 2.82483 3.13989 3.58033 3.70712 3.75690 3.84911 3.95221 3.96834 4.05207 4.14952 4.22685 4.31195 4.34609 4.40068 4.46204 4.50511 4.52083 4.57446 4.64003 4.70701 4.72523 4.77992 4.89743 5.03544 5.05181 5.08587 5.10774 5.20111 5.36060 5.39723 5.47956 5.49606 5.58973 5.59641 5.71679 5.82920 6.06052 6.09245 6.15061 6.26435 6.84854 7.14416 7.36971 8.93769 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027006 B = 0.002286 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.565313 B =12245.612401 C =12922.487475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.082 4.082 4 C -0.125 4.125 5 C -0.117 4.117 6 C -0.102 4.102 7 C 0.134 3.866 8 H 0.062 0.938 9 C 0.091 3.909 10 N -0.620 5.620 11 C 0.512 3.488 12 O -0.587 6.587 13 C -0.114 4.114 14 C 0.042 3.958 15 C -0.541 4.541 16 H 0.079 0.921 17 C -0.009 4.009 18 N -0.938 5.938 19 Si 0.975 3.025 20 H -0.250 1.250 21 H -0.281 1.281 22 H -0.281 1.281 23 C 0.065 3.935 24 C 0.048 3.952 25 O -0.377 6.377 26 C -0.094 4.094 27 C -0.125 4.125 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.138 0.862 34 H 0.124 0.876 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.106 0.894 39 H -0.020 1.020 40 H -0.019 1.019 41 H 0.263 0.737 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.056 0.944 45 H 0.143 0.857 46 H 0.131 0.869 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.767 -26.478 -11.769 29.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.082 4.082 4 C -0.143 4.143 5 C -0.135 4.135 6 C -0.103 4.103 7 C 0.075 3.925 8 H 0.080 0.920 9 C -0.032 4.032 10 N -0.354 5.354 11 C 0.303 3.697 12 O -0.467 6.467 13 C -0.154 4.154 14 C 0.005 3.995 15 C -0.579 4.579 16 H 0.097 0.903 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.799 3.201 20 H -0.174 1.174 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.056 4.056 24 C -0.029 4.029 25 O -0.296 6.296 26 C -0.112 4.112 27 C -0.143 4.143 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.156 0.844 34 H 0.142 0.858 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.124 0.876 39 H -0.001 1.001 40 H 0.000 1.000 41 H 0.071 0.929 42 H 0.112 0.888 43 H 0.132 0.868 44 H 0.074 0.926 45 H 0.161 0.839 46 H 0.149 0.851 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.274 -26.639 -11.339 29.624 hybrid contribution -0.297 1.370 0.755 1.593 sum 5.977 -25.268 -10.584 28.040 Atomic orbital electron populations 1.21749 0.94430 1.02433 1.01790 1.20598 0.96303 0.91266 1.03878 1.20263 0.97721 0.97335 0.92929 1.21199 1.00059 0.94289 0.98760 1.21122 0.99581 0.95434 0.97335 1.19477 1.02314 0.93882 0.94611 1.20988 0.89699 0.91607 0.90188 0.91972 1.22193 0.96651 0.81185 1.03144 1.48358 1.42860 1.07619 1.36577 1.21523 0.80771 0.87859 0.79583 1.90646 1.34820 1.85192 1.36021 1.21650 1.02034 0.89053 1.02616 1.18702 0.94238 0.93467 0.93144 1.21729 1.23551 0.93476 1.19095 0.90308 1.26169 0.95272 1.04494 0.94696 1.70191 1.31348 1.33479 1.22834 0.85248 0.78394 0.77950 0.78493 1.17364 1.20726 1.20703 1.22879 0.89361 1.02383 0.91008 1.23296 0.94317 0.81033 1.04266 1.87939 1.61490 1.32622 1.47526 1.21094 0.97432 0.95019 0.97703 1.21296 0.99890 0.94553 0.98589 0.93256 0.92948 0.91007 0.89851 0.90145 0.84392 0.85776 0.90613 0.90215 0.87514 0.87624 1.00113 1.00034 0.92869 0.88794 0.86803 0.92573 0.83933 0.85116 0.84091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.89 71.98 0.71 -0.90 16 2 C -0.08 -0.93 6.06 29.85 0.18 -0.75 16 3 C -0.08 -1.34 5.13 -19.87 -0.10 -1.44 16 4 C -0.13 -2.25 9.70 22.27 0.22 -2.03 16 5 C -0.12 -2.47 9.68 22.27 0.22 -2.25 16 6 C -0.10 -2.29 5.01 -19.87 -0.10 -2.39 16 7 C 0.13 3.21 2.99 29.95 0.09 3.30 16 8 H 0.06 1.58 8.05 -2.38 -0.02 1.57 16 9 C 0.09 2.58 5.91 86.35 0.51 3.09 16 10 N -0.62 -18.59 3.01 -816.52 -2.46 -21.05 16 11 C 0.51 20.70 7.71 87.66 0.68 21.38 16 12 O -0.59 -29.90 15.45 -3.04 -0.05 -29.94 16 13 C -0.11 -4.60 4.01 29.85 0.12 -4.48 16 14 C 0.04 2.36 4.26 29.85 0.13 2.49 16 15 C -0.54 -30.64 9.11 25.60 0.23 -30.41 16 16 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 17 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 18 N -0.94 -59.82 13.29 21.44 0.28 -59.54 16 19 Si 0.98 44.15 29.54 68.60 2.03 46.18 16 20 H -0.25 -10.34 7.11 99.48 0.71 -9.64 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 C 0.07 1.31 6.57 86.50 0.57 1.88 16 24 C 0.05 0.81 7.00 72.22 0.51 1.32 16 25 O -0.38 -8.14 9.54 -148.98 -1.42 -9.56 16 26 C -0.09 -1.88 9.35 22.27 0.21 -1.68 16 27 C -0.13 -2.12 9.70 22.27 0.22 -1.90 16 28 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 32 H 0.08 0.76 8.09 -2.38 -0.02 0.74 16 33 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.12 2.50 8.06 -2.91 -0.02 2.47 16 35 H 0.08 2.53 7.08 -2.39 -0.02 2.52 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.11 3.71 7.67 -2.38 -0.02 3.69 16 38 H 0.11 3.72 8.00 -2.39 -0.02 3.70 16 39 H -0.02 -1.25 8.10 -2.38 -0.02 -1.27 16 40 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 41 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.11 2.05 6.06 -2.39 -0.01 2.04 16 44 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.13 2.44 7.63 -2.91 -0.02 2.42 16 47 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -78.43 383.78 4.15 -74.28 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.93 Total: 14.48 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 4.84 Total: -14.84 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -2.18 Total: -80.59 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -1.47 Total: -39.51 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -78.43 4.15 -74.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293408147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.813 kcal (2) G-P(sol) polarization free energy of solvation -78.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds