Wall clock time and date at job start Tue Mar 31 2020 13:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50709 * 120.00217 * 2 1 4 4 N 1.46500 * 109.47167 * 120.68623 * 3 2 1 5 5 C 1.46504 * 119.99878 * 274.66540 * 4 3 2 6 6 C 1.50705 * 109.47014 * 276.99229 * 5 4 3 7 7 H 1.08002 * 120.00244 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99827 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99987 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00036 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47375 * 89.99941 * 10 8 6 12 12 H 1.48500 * 109.47395 * 210.00114 * 10 8 6 13 13 H 1.48498 * 109.47123 * 330.00096 * 10 8 6 14 14 C 1.34777 * 119.99761 * 94.67166 * 4 3 2 15 15 O 1.21278 * 120.00199 * 5.94738 * 14 4 3 16 16 C 1.50698 * 119.99799 * 185.95307 * 14 4 3 17 17 C 1.53000 * 109.47028 * 286.76462 * 16 14 4 18 18 O 1.42902 * 109.47117 * 46.76293 * 16 14 4 19 19 C 1.52994 * 109.47234 * 166.76552 * 16 14 4 20 20 C 1.53004 * 109.47036 * 179.97438 * 19 16 14 21 21 C 1.50707 * 109.46943 * 179.97438 * 20 19 16 22 22 C 1.38227 * 119.99871 * 89.99968 * 21 20 19 23 23 C 1.38242 * 120.00145 * 179.97438 * 22 21 20 24 24 C 1.38239 * 119.99400 * 359.95859 * 23 22 21 25 25 C 1.38237 * 120.00376 * 0.27948 * 24 23 22 26 26 C 1.38233 * 119.99656 * 359.50723 * 25 24 23 27 27 H 1.08003 * 120.00418 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99936 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00418 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.46453 * 0.68577 * 3 2 1 31 31 H 1.09000 * 109.46872 * 240.68997 * 3 2 1 32 32 H 1.08999 * 109.47141 * 36.99350 * 5 4 3 33 33 H 1.09000 * 109.46605 * 156.99460 * 5 4 3 34 34 H 0.96998 * 119.99792 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47339 * 295.93667 * 17 16 14 36 36 H 1.08999 * 109.47262 * 55.93453 * 17 16 14 37 37 H 1.09000 * 109.47651 * 175.93566 * 17 16 14 38 38 H 0.96699 * 114.00095 * 60.00260 * 18 16 14 39 39 H 1.09002 * 109.47373 * 59.99648 * 19 16 14 40 40 H 1.09000 * 109.46861 * 299.99462 * 19 16 14 41 41 H 1.08994 * 109.46842 * 60.00354 * 20 19 16 42 42 H 1.08992 * 109.47319 * 299.99842 * 20 19 16 43 43 H 1.07995 * 120.00433 * 359.97438 * 22 21 20 44 44 H 1.07992 * 120.00326 * 179.97438 * 23 22 21 45 45 H 1.07999 * 119.99311 * 180.02562 * 24 23 22 46 46 H 1.07991 * 120.00094 * 179.72569 * 25 24 23 47 47 H 1.08006 * 120.00013 * 180.26046 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9181 1.3756 1.1878 5 6 2.3702 1.8616 2.4566 6 6 2.3986 3.3683 2.4718 7 1 2.7857 3.9097 1.6213 8 6 1.9305 4.0555 3.5716 9 7 1.9558 5.3704 3.5851 10 14 1.2617 3.1190 5.0430 11 1 2.3657 2.8415 5.9967 12 1 0.2191 3.9343 5.7165 13 1 0.6686 1.8367 4.5858 14 6 4.2084 0.9934 1.1132 15 8 4.6913 0.6941 0.0417 16 6 5.0512 0.9380 2.3613 17 6 5.3885 2.3605 2.8124 18 8 4.3268 0.2693 3.3958 19 6 6.3449 0.1752 2.0696 20 6 7.2008 0.1195 3.3366 21 6 8.4750 -0.6324 3.0494 22 6 9.5927 0.0470 2.6025 23 6 10.7616 -0.6426 2.3395 24 6 10.8128 -2.0116 2.5245 25 6 9.6936 -2.6918 2.9668 26 6 8.5261 -2.0015 3.2339 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3552 2.1336 0.0123 31 1 2.6808 1.3682 -0.8961 32 1 1.3419 1.5164 2.5643 33 1 2.9704 1.4785 3.2820 34 1 1.6261 5.8538 4.3587 35 1 6.0025 2.8463 2.0540 36 1 4.4670 2.9260 2.9508 37 1 5.9364 2.3228 3.7540 38 1 4.0792 -0.6397 3.1782 39 1 6.8974 0.6852 1.2804 40 1 6.1046 -0.8382 1.7482 41 1 6.6486 -0.3904 4.1259 42 1 7.4412 1.1330 3.6576 43 1 9.5528 1.1166 2.4586 44 1 11.6347 -0.1119 1.9899 45 1 11.7262 -2.5503 2.3195 46 1 9.7324 -3.7618 3.1070 47 1 7.6529 -2.5323 3.5835 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293644710.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:22 Heat of formation + Delta-G solvation = -58.065077 kcal Electronic energy + Delta-G solvation = -27185.177135 eV Core-core repulsion = 23525.739524 eV Total energy + Delta-G solvation = -3659.437611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.57757 -40.10540 -38.29024 -37.29617 -35.07089 -34.90590 -33.87837 -32.27190 -31.72225 -30.05646 -29.15926 -27.46529 -25.89044 -24.45139 -23.41044 -22.97746 -21.57010 -20.97038 -20.21330 -18.99298 -18.55944 -17.74414 -17.41820 -16.66115 -16.62042 -16.30815 -16.10177 -15.98159 -15.61305 -15.36353 -14.75296 -14.45155 -14.30772 -14.17175 -14.08123 -13.92224 -13.78152 -13.62953 -13.23500 -13.16592 -13.03875 -12.68997 -12.63212 -12.46730 -12.33663 -12.30503 -12.07932 -11.93980 -11.84867 -11.66718 -11.59677 -11.20924 -10.74168 -10.57877 -10.12185 -9.77889 -9.53408 -9.44019 -8.26505 -6.29087 0.49040 0.54234 1.24204 1.43279 1.44886 1.53403 1.55044 2.36264 2.38392 2.92017 3.06503 3.23662 3.50603 3.68498 3.91007 4.03892 4.08071 4.15594 4.18436 4.24681 4.35490 4.40968 4.47556 4.53240 4.69322 4.72932 4.77183 4.79321 4.85075 4.87974 4.95430 4.99955 5.06503 5.16439 5.17885 5.24239 5.33281 5.50689 5.61447 5.61623 5.64074 5.64754 5.66142 5.80065 5.88572 6.17936 6.19622 6.55007 6.66859 6.77997 7.19332 7.34693 8.89326 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.003786 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.490582 B = 7393.005755 C = 8463.776045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.176 4.176 3 C 0.133 3.867 4 N -0.578 5.578 5 C 0.195 3.805 6 C -0.528 4.528 7 H 0.028 0.972 8 C 0.023 3.977 9 N -0.942 5.942 10 Si 0.936 3.064 11 H -0.261 1.261 12 H -0.289 1.289 13 H -0.243 1.243 14 C 0.486 3.514 15 O -0.587 6.587 16 C 0.140 3.860 17 C -0.165 4.165 18 O -0.539 6.539 19 C -0.104 4.104 20 C -0.071 4.071 21 C -0.089 4.089 22 C -0.136 4.136 23 C -0.128 4.128 24 C -0.135 4.135 25 C -0.126 4.126 26 C -0.129 4.129 27 H 0.097 0.903 28 H 0.123 0.877 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.028 0.972 33 H 0.095 0.905 34 H 0.267 0.733 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.388 0.612 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.123 0.877 44 H 0.137 0.863 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.056 -16.855 0.740 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.195 4.195 3 C 0.011 3.989 4 N -0.307 5.307 5 C 0.074 3.926 6 C -0.567 4.567 7 H 0.047 0.953 8 C -0.176 4.176 9 N -0.581 5.581 10 Si 0.759 3.241 11 H -0.186 1.186 12 H -0.215 1.215 13 H -0.166 1.166 14 C 0.274 3.726 15 O -0.469 6.469 16 C 0.097 3.903 17 C -0.222 4.222 18 O -0.346 6.346 19 C -0.142 4.142 20 C -0.108 4.108 21 C -0.089 4.089 22 C -0.154 4.154 23 C -0.146 4.146 24 C -0.153 4.153 25 C -0.144 4.144 26 C -0.147 4.147 27 H 0.115 0.885 28 H 0.141 0.859 29 H 0.128 0.872 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.239 0.761 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.141 0.859 44 H 0.155 0.845 45 H 0.159 0.841 46 H 0.159 0.841 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.315 -16.271 0.595 19.274 hybrid contribution -0.573 0.152 -0.039 0.594 sum 9.742 -16.119 0.556 18.842 Atomic orbital electron populations 1.24062 0.95154 1.03014 0.98008 1.23128 0.96628 0.97621 1.02149 1.20527 0.93550 0.96297 0.88573 1.48003 1.09679 1.60931 1.12066 1.20275 0.95950 0.92892 0.83514 1.21428 1.41461 0.91444 1.02334 0.95329 1.25656 0.95296 0.95326 1.01299 1.70050 1.48101 1.08293 1.31687 0.85879 0.78979 0.79644 0.79591 1.18604 1.21478 1.16614 1.21857 0.82672 0.76401 0.91682 1.90590 1.72466 1.52375 1.31501 1.21129 0.89954 0.95298 0.83950 1.22183 1.04818 0.93158 1.02074 1.86557 1.75354 1.31351 1.41384 1.21819 0.93902 1.00278 0.98217 1.20549 0.92472 1.00709 0.97117 1.20040 0.95356 0.94551 0.98996 1.21311 0.93438 1.00514 1.00142 1.21430 0.98181 0.95128 0.99880 1.21466 0.99392 0.94556 0.99847 1.21460 0.92974 1.00944 0.99050 1.21317 0.99045 0.93643 1.00730 0.88472 0.85863 0.87227 0.91013 0.90971 0.95440 0.88758 0.92406 0.92038 0.89573 0.89731 0.76145 0.91779 0.91127 0.89448 0.90719 0.85936 0.84518 0.84073 0.84080 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 14.32 67.79 0.97 -3.24 16 2 C -0.18 -5.32 9.84 25.66 0.25 -5.07 16 3 C 0.13 4.98 5.96 85.64 0.51 5.49 16 4 N -0.58 -23.48 2.45 -830.46 -2.03 -25.51 16 5 C 0.19 8.48 3.58 85.63 0.31 8.79 16 6 C -0.53 -28.08 7.51 25.60 0.19 -27.89 16 7 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 8 C 0.02 1.25 5.47 84.65 0.46 1.71 16 9 N -0.94 -55.79 13.96 21.45 0.30 -55.49 16 10 Si 0.94 40.91 27.47 68.60 1.88 42.79 16 11 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 12 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 14 C 0.49 19.18 6.63 87.66 0.58 19.76 16 15 O -0.59 -25.51 15.47 -3.02 -0.05 -25.55 16 16 C 0.14 4.64 0.64 -11.54 -0.01 4.64 16 17 C -0.17 -6.09 8.10 71.98 0.58 -5.51 16 18 O -0.54 -15.88 9.37 -148.98 -1.40 -17.28 16 19 C -0.10 -2.93 3.82 30.59 0.12 -2.81 16 20 C -0.07 -1.70 4.85 29.85 0.14 -1.56 16 21 C -0.09 -2.06 5.13 -19.86 -0.10 -2.16 16 22 C -0.14 -3.06 9.70 22.27 0.22 -2.84 16 23 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 24 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 25 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 26 C -0.13 -2.64 9.70 22.27 0.22 -2.43 16 27 H 0.10 2.54 7.83 -2.91 -0.02 2.51 16 28 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.11 3.15 8.06 -2.91 -0.02 3.12 16 30 H 0.07 2.81 7.75 -2.38 -0.02 2.79 16 31 H 0.07 2.81 7.22 -2.39 -0.02 2.79 16 32 H 0.03 1.19 7.18 -2.39 -0.02 1.17 16 33 H 0.10 3.93 3.51 -2.38 -0.01 3.93 16 34 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.09 3.89 4.20 -2.39 -0.01 3.88 16 37 H 0.08 2.72 6.65 -2.39 -0.02 2.71 16 38 H 0.39 8.41 9.04 -74.04 -0.67 7.74 16 39 H 0.06 2.02 7.96 -2.39 -0.02 2.00 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.09 1.94 7.62 -2.39 -0.02 1.92 16 42 H 0.07 1.82 6.47 -2.39 -0.02 1.81 16 43 H 0.12 2.61 8.06 -2.91 -0.02 2.58 16 44 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 45 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 46 H 0.14 1.80 8.06 -2.92 -0.02 1.78 16 47 H 0.13 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -66.93 379.36 4.06 -62.87 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: 0.24 Total: 37.71 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 5.12 Total: -19.53 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -1.73 Total: -81.00 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -1.44 Total: -42.83 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 1.88 Total: 42.79 kcal Total: -66.93 4.06 -62.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293644710.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.801 kcal (2) G-P(sol) polarization free energy of solvation -66.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds