Wall clock time and date at job start Tue Mar 31 2020 12:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00263 * 2 1 4 4 N 1.46497 * 109.47287 * 122.96001 * 3 2 1 5 5 C 1.46500 * 119.99947 * 274.76933 * 4 3 2 6 6 C 1.50700 * 109.47235 * 275.09664 * 5 4 3 7 7 H 1.07994 * 119.99942 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99723 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00063 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99585 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47080 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47320 * 119.99788 * 10 8 6 13 13 H 1.48496 * 109.46623 * 239.99620 * 10 8 6 14 14 C 1.34778 * 120.00282 * 94.76901 * 4 3 2 15 15 O 1.21284 * 119.99506 * 5.67423 * 14 4 3 16 16 C 1.50691 * 120.00378 * 185.67080 * 14 4 3 17 17 C 1.53007 * 109.47166 * 300.63671 * 16 14 4 18 18 C 1.53001 * 109.47253 * 180.63639 * 16 14 4 19 19 C 1.50703 * 109.47063 * 60.63561 * 16 14 4 20 20 C 1.38163 * 120.02817 * 6.28970 * 19 16 14 21 21 C 1.38243 * 120.05249 * 179.74181 * 20 19 16 22 22 C 1.38286 * 120.11853 * 0.27680 * 21 20 19 23 23 C 1.38125 * 120.05044 * 0.02562 * 22 21 20 24 24 C 1.38716 * 120.02582 * 186.56294 * 19 16 14 25 25 O 1.35891 * 120.05923 * 359.97438 * 24 19 16 26 26 C 1.42903 * 117.00347 * 180.25521 * 25 24 19 27 27 H 1.08002 * 120.00001 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.00094 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00001 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46724 * 2.96140 * 3 2 1 31 31 H 1.09003 * 109.47406 * 242.96108 * 3 2 1 32 32 H 1.08999 * 109.47177 * 35.09771 * 5 4 3 33 33 H 1.09007 * 109.47307 * 155.09388 * 5 4 3 34 34 H 0.96996 * 119.99301 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.47146 * 191.55367 * 17 16 14 36 36 H 1.09000 * 109.46991 * 311.55594 * 17 16 14 37 37 H 1.08999 * 109.47110 * 71.55910 * 17 16 14 38 38 H 1.08996 * 109.46823 * 294.42055 * 18 16 14 39 39 H 1.08990 * 109.47164 * 54.42363 * 18 16 14 40 40 H 1.09004 * 109.47071 * 174.42177 * 18 16 14 41 41 H 1.08004 * 119.97015 * 0.02562 * 20 19 16 42 42 H 1.08008 * 119.94129 * 180.25866 * 21 20 19 43 43 H 1.07994 * 119.97723 * 179.97438 * 22 21 20 44 44 H 1.07996 * 120.02713 * 179.97438 * 23 22 21 45 45 H 1.08996 * 109.47323 * 179.97438 * 26 25 24 46 46 H 1.09004 * 109.46832 * 299.99455 * 26 25 24 47 47 H 1.08994 * 109.47040 * 59.99306 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9585 1.3523 1.1589 5 6 2.4541 1.8106 2.4557 6 6 2.5249 3.3146 2.5191 7 1 2.9069 3.8732 1.6775 8 6 2.1018 3.9775 3.6518 9 7 1.6361 3.2972 4.6765 10 14 2.1889 5.8418 3.7301 11 1 2.7462 6.3652 2.4571 12 1 0.8257 6.3928 3.9378 13 1 3.0646 6.2494 4.8580 14 6 4.2458 0.9740 1.0321 15 8 4.6904 0.6931 -0.0608 16 6 5.1328 0.9002 2.2480 17 6 5.2033 2.2767 2.9123 18 6 6.5380 0.4638 1.8286 19 6 4.5664 -0.0997 3.2230 20 6 3.4762 -0.8706 2.8678 21 6 2.9595 -1.7917 3.7599 22 6 3.5284 -1.9400 5.0116 23 6 4.6145 -1.1673 5.3737 24 6 5.1356 -0.2427 4.4799 25 8 6.2048 0.5179 4.8335 26 6 6.7427 0.3129 6.1415 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3564 2.1329 0.0531 31 1 2.6498 1.3862 -0.9153 32 1 1.4194 1.4901 2.5770 33 1 3.0623 1.3842 3.2535 34 1 1.3382 3.7637 5.4730 35 1 5.9953 2.2787 3.6611 36 1 5.4150 3.0340 2.1574 37 1 4.2497 2.4981 3.3916 38 1 6.5026 -0.5563 1.4461 39 1 6.9085 1.1310 1.0504 40 1 7.2040 0.5058 2.6905 41 1 3.0302 -0.7567 1.8908 42 1 2.1099 -2.3963 3.4788 43 1 3.1226 -2.6600 5.7068 44 1 5.0582 -1.2832 6.3515 45 1 7.5901 0.9812 6.2947 46 1 5.9753 0.5221 6.8868 47 1 7.0731 -0.7210 6.2405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293958680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:00 Heat of formation + Delta-G solvation = -11.897988 kcal Electronic energy + Delta-G solvation = -29007.050583 eV Core-core repulsion = 25349.614927 eV Total energy + Delta-G solvation = -3657.435656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.70987 -39.04235 -36.94793 -35.56835 -34.81333 -33.15292 -32.06768 -29.97720 -29.33665 -27.74741 -27.11957 -26.26286 -25.67130 -23.14836 -22.64470 -21.93280 -20.80200 -19.53339 -18.21611 -17.50536 -16.48708 -16.25953 -15.87179 -15.56766 -15.44134 -14.96729 -14.50250 -14.37090 -14.19292 -14.02117 -13.33354 -13.24167 -13.01560 -12.75341 -12.47782 -12.15556 -12.00932 -11.91204 -11.64819 -11.54687 -11.34618 -11.19835 -11.17058 -10.96764 -10.91850 -10.81479 -10.73404 -10.67411 -10.25143 -10.06998 -9.69437 -9.68827 -9.17228 -8.73385 -8.55410 -8.27524 -7.72647 -7.65495 -6.13848 -4.18165 1.71226 1.84771 2.57979 3.22900 3.31669 3.34835 3.43263 3.58361 4.09182 4.14772 4.36907 5.02682 5.08297 5.18494 5.23023 5.29204 5.34111 5.38930 5.47281 5.54861 5.57892 5.66206 5.77113 5.80572 5.85508 6.01885 6.08470 6.21614 6.31814 6.36636 6.39796 6.43921 6.60004 6.65095 6.75345 6.79643 6.85216 6.91021 6.93834 6.98383 7.08998 7.16880 7.28653 7.58128 7.66709 7.73893 7.80320 8.11357 8.39163 8.83379 9.05107 9.45395 10.91854 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009219 B = 0.007312 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.596352 B = 3828.612536 C = 5004.820576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.159 4.159 3 C 0.138 3.862 4 N -0.590 5.590 5 C 0.224 3.776 6 C -0.530 4.530 7 H 0.061 0.939 8 C 0.066 3.934 9 N -0.886 5.886 10 Si 0.890 3.110 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.282 1.282 14 C 0.527 3.473 15 O -0.571 6.571 16 C -0.024 4.024 17 C -0.161 4.161 18 C -0.119 4.119 19 C -0.083 4.083 20 C -0.076 4.076 21 C -0.153 4.153 22 C -0.088 4.088 23 C -0.208 4.208 24 C 0.139 3.861 25 O -0.303 6.303 26 C 0.025 3.975 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.030 0.970 33 H 0.064 0.936 34 H 0.263 0.737 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.124 0.876 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.131 0.869 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.095 0.905 46 H 0.054 0.946 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.507 -8.610 1.821 9.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.178 4.178 3 C 0.015 3.985 4 N -0.319 5.319 5 C 0.105 3.895 6 C -0.568 4.568 7 H 0.079 0.921 8 C -0.137 4.137 9 N -0.524 5.524 10 Si 0.717 3.283 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.315 3.685 15 O -0.452 6.452 16 C -0.027 4.027 17 C -0.218 4.218 18 C -0.176 4.176 19 C -0.084 4.084 20 C -0.094 4.094 21 C -0.171 4.171 22 C -0.106 4.106 23 C -0.227 4.227 24 C 0.094 3.906 25 O -0.216 6.216 26 C -0.070 4.070 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.142 0.858 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.149 0.851 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.141 0.859 45 H 0.113 0.887 46 H 0.073 0.927 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.755 -8.553 1.346 9.878 hybrid contribution -0.283 0.956 0.576 1.152 sum 4.473 -7.597 1.922 9.023 Atomic orbital electron populations 1.23773 0.95777 1.01565 1.01405 1.23361 0.96146 0.99141 0.99154 1.20429 0.93062 0.94678 0.90296 1.48241 1.08637 1.62695 1.12366 1.19919 0.95867 0.94667 0.79088 1.21485 1.42565 0.91636 1.01160 0.92070 1.24890 0.95010 0.98322 0.95509 1.69950 1.41986 1.35443 1.05055 0.86560 0.77770 0.85686 0.78256 1.19638 1.20970 1.20837 1.20388 0.82409 0.75872 0.89814 1.90571 1.74535 1.52023 1.28091 1.19503 0.94697 0.96614 0.91868 1.22559 1.06984 0.91812 1.00410 1.21627 0.94005 1.01054 1.00948 1.18881 0.97350 0.99381 0.92823 1.21182 0.94101 0.93869 1.00271 1.20914 1.01205 1.00503 0.94494 1.20794 0.95164 0.98443 0.96178 1.21075 1.01108 1.00605 0.99894 1.18634 0.87988 0.90995 0.93019 1.86192 1.43568 1.58875 1.32994 1.23004 0.98877 1.01521 0.83605 0.88379 0.88939 0.88008 0.89975 0.89935 0.95200 0.91825 0.92700 0.92127 0.93288 0.85828 0.93109 0.92163 0.91744 0.85123 0.86389 0.86375 0.85903 0.88674 0.92737 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.74 14.32 29.02 0.42 -2.32 16 2 C -0.16 -2.62 9.08 -36.02 -0.33 -2.95 16 3 C 0.14 2.62 5.96 -5.19 -0.03 2.59 16 4 N -0.59 -12.55 1.44 -176.43 -0.25 -12.81 16 5 C 0.22 5.28 3.54 -5.19 -0.02 5.26 16 6 C -0.53 -13.54 6.88 -34.44 -0.24 -13.77 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.07 1.71 5.29 -17.82 -0.09 1.62 16 9 N -0.89 -24.06 13.29 55.43 0.74 -23.33 16 10 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 C 0.53 11.37 5.10 -10.99 -0.06 11.32 16 15 O -0.57 -13.23 15.40 5.55 0.09 -13.14 16 16 C -0.02 -0.47 0.48 -156.81 -0.08 -0.55 16 17 C -0.16 -3.37 6.86 37.16 0.25 -3.12 16 18 C -0.12 -2.12 7.60 37.16 0.28 -1.84 16 19 C -0.08 -1.59 3.13 -104.47 -0.33 -1.92 16 20 C -0.08 -1.41 7.35 -39.61 -0.29 -1.70 16 21 C -0.15 -2.47 10.04 -39.56 -0.40 -2.87 16 22 C -0.09 -1.30 10.04 -39.61 -0.40 -1.70 16 23 C -0.21 -3.19 9.04 -39.43 -0.36 -3.54 16 24 C 0.14 2.42 6.31 -39.21 -0.25 2.17 16 25 O -0.30 -4.86 6.42 -19.40 -0.12 -4.98 16 26 C 0.03 0.29 9.81 101.05 0.99 1.28 16 27 H 0.10 1.42 7.84 -52.49 -0.41 1.00 16 28 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.10 1.66 7.66 -52.49 -0.40 1.25 16 30 H 0.08 1.55 7.75 -51.93 -0.40 1.15 16 31 H 0.08 1.58 7.22 -51.93 -0.37 1.20 16 32 H 0.03 0.76 8.11 -51.93 -0.42 0.34 16 33 H 0.06 1.56 3.19 -51.92 -0.17 1.39 16 34 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.06 1.17 6.07 -51.93 -0.32 0.86 16 36 H 0.05 1.04 8.09 -51.93 -0.42 0.62 16 37 H 0.12 2.96 3.46 -51.93 -0.18 2.78 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.08 7.94 -51.93 -0.41 0.67 16 40 H 0.06 1.05 6.77 -51.93 -0.35 0.70 16 41 H 0.13 2.51 4.52 -52.48 -0.24 2.27 16 42 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 43 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.12 1.53 6.30 -52.49 -0.33 1.20 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 47 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 LS Contribution 365.07 15.07 5.50 5.50 Total: -1.00 -29.22 365.07 -6.87 -36.09 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -6.88 Total: 9.22 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -0.91 Total: -12.04 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.48 Total: -36.13 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.04 Total: -18.12 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.22 -6.87 -36.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293958680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.189 kcal (2) G-P(sol) polarization free energy of solvation -29.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds