Wall clock time and date at job start Tue Mar 31 2020 12:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00263 * 2 1 4 4 N 1.46497 * 109.47287 * 122.96001 * 3 2 1 5 5 C 1.46500 * 119.99947 * 274.76933 * 4 3 2 6 6 C 1.50700 * 109.47235 * 275.09664 * 5 4 3 7 7 H 1.07994 * 119.99942 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99723 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00063 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99585 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47080 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47320 * 119.99788 * 10 8 6 13 13 H 1.48496 * 109.46623 * 239.99620 * 10 8 6 14 14 C 1.34778 * 120.00282 * 94.76901 * 4 3 2 15 15 O 1.21284 * 119.99506 * 5.67423 * 14 4 3 16 16 C 1.50691 * 120.00378 * 185.67080 * 14 4 3 17 17 C 1.53007 * 109.47166 * 300.63671 * 16 14 4 18 18 C 1.53001 * 109.47253 * 180.63639 * 16 14 4 19 19 C 1.50703 * 109.47063 * 60.63561 * 16 14 4 20 20 C 1.38163 * 120.02817 * 6.28970 * 19 16 14 21 21 C 1.38243 * 120.05249 * 179.74181 * 20 19 16 22 22 C 1.38286 * 120.11853 * 0.27680 * 21 20 19 23 23 C 1.38125 * 120.05044 * 0.02562 * 22 21 20 24 24 C 1.38716 * 120.02582 * 186.56294 * 19 16 14 25 25 O 1.35891 * 120.05923 * 359.97438 * 24 19 16 26 26 C 1.42903 * 117.00347 * 180.25521 * 25 24 19 27 27 H 1.08002 * 120.00001 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.00094 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00001 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46724 * 2.96140 * 3 2 1 31 31 H 1.09003 * 109.47406 * 242.96108 * 3 2 1 32 32 H 1.08999 * 109.47177 * 35.09771 * 5 4 3 33 33 H 1.09007 * 109.47307 * 155.09388 * 5 4 3 34 34 H 0.96996 * 119.99301 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.47146 * 191.55367 * 17 16 14 36 36 H 1.09000 * 109.46991 * 311.55594 * 17 16 14 37 37 H 1.08999 * 109.47110 * 71.55910 * 17 16 14 38 38 H 1.08996 * 109.46823 * 294.42055 * 18 16 14 39 39 H 1.08990 * 109.47164 * 54.42363 * 18 16 14 40 40 H 1.09004 * 109.47071 * 174.42177 * 18 16 14 41 41 H 1.08004 * 119.97015 * 0.02562 * 20 19 16 42 42 H 1.08008 * 119.94129 * 180.25866 * 21 20 19 43 43 H 1.07994 * 119.97723 * 179.97438 * 22 21 20 44 44 H 1.07996 * 120.02713 * 179.97438 * 23 22 21 45 45 H 1.08996 * 109.47323 * 179.97438 * 26 25 24 46 46 H 1.09004 * 109.46832 * 299.99455 * 26 25 24 47 47 H 1.08994 * 109.47040 * 59.99306 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9585 1.3523 1.1589 5 6 2.4541 1.8106 2.4557 6 6 2.5249 3.3146 2.5191 7 1 2.9069 3.8732 1.6775 8 6 2.1018 3.9775 3.6518 9 7 1.6361 3.2972 4.6765 10 14 2.1889 5.8418 3.7301 11 1 2.7462 6.3652 2.4571 12 1 0.8257 6.3928 3.9378 13 1 3.0646 6.2494 4.8580 14 6 4.2458 0.9740 1.0321 15 8 4.6904 0.6931 -0.0608 16 6 5.1328 0.9002 2.2480 17 6 5.2033 2.2767 2.9123 18 6 6.5380 0.4638 1.8286 19 6 4.5664 -0.0997 3.2230 20 6 3.4762 -0.8706 2.8678 21 6 2.9595 -1.7917 3.7599 22 6 3.5284 -1.9400 5.0116 23 6 4.6145 -1.1673 5.3737 24 6 5.1356 -0.2427 4.4799 25 8 6.2048 0.5179 4.8335 26 6 6.7427 0.3129 6.1415 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3564 2.1329 0.0531 31 1 2.6498 1.3862 -0.9153 32 1 1.4194 1.4901 2.5770 33 1 3.0623 1.3842 3.2535 34 1 1.3382 3.7637 5.4730 35 1 5.9953 2.2787 3.6611 36 1 5.4150 3.0340 2.1574 37 1 4.2497 2.4981 3.3916 38 1 6.5026 -0.5563 1.4461 39 1 6.9085 1.1310 1.0504 40 1 7.2040 0.5058 2.6905 41 1 3.0302 -0.7567 1.8908 42 1 2.1099 -2.3963 3.4788 43 1 3.1226 -2.6600 5.7068 44 1 5.0582 -1.2832 6.3515 45 1 7.5901 0.9812 6.2947 46 1 5.9753 0.5221 6.8868 47 1 7.0731 -0.7210 6.2405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293958680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:59 Heat of formation + Delta-G solvation = -25.928946 kcal Electronic energy + Delta-G solvation = -29007.659011 eV Core-core repulsion = 25349.614927 eV Total energy + Delta-G solvation = -3658.044084 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.16761 -40.45174 -38.17983 -37.21766 -36.34684 -34.89153 -33.73244 -31.25048 -30.57349 -29.56800 -28.16781 -27.88327 -27.18714 -25.00352 -24.09556 -23.21173 -22.20061 -20.88746 -19.74820 -18.85776 -18.43300 -17.76732 -17.41790 -16.93804 -16.54608 -16.51548 -16.16610 -15.83300 -15.56013 -15.35923 -14.79375 -14.62543 -14.47742 -14.36140 -14.01626 -13.86123 -13.41059 -13.20810 -13.12435 -13.03669 -12.92778 -12.72090 -12.65015 -12.57392 -12.43941 -12.25243 -12.16995 -12.06689 -11.83982 -11.57965 -11.57466 -11.34700 -10.70416 -10.54119 -10.21127 -9.62335 -9.42685 -8.96282 -8.14680 -6.24640 0.44635 0.59802 1.28141 1.38500 1.42584 1.51869 1.72839 2.38380 2.48343 2.54393 2.88968 3.14991 3.60406 3.72120 4.03979 4.06247 4.15330 4.17962 4.26420 4.28704 4.39253 4.50289 4.52194 4.57311 4.60166 4.79888 4.81173 4.82058 4.86544 4.96826 4.98771 5.01993 5.03479 5.12656 5.17580 5.28791 5.32701 5.49063 5.53969 5.65245 5.66258 5.68564 5.78361 5.83531 5.95189 5.96247 6.13366 6.58566 6.59429 6.85649 7.29647 7.44049 8.90290 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009219 B = 0.007312 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.596352 B = 3828.612536 C = 5004.820576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.179 4.179 3 C 0.135 3.865 4 N -0.590 5.590 5 C 0.246 3.754 6 C -0.534 4.534 7 H 0.046 0.954 8 C 0.029 3.971 9 N -0.911 5.911 10 Si 0.943 3.057 11 H -0.274 1.274 12 H -0.279 1.279 13 H -0.277 1.277 14 C 0.522 3.478 15 O -0.593 6.593 16 C -0.023 4.023 17 C -0.149 4.149 18 C -0.110 4.110 19 C -0.111 4.111 20 C -0.097 4.097 21 C -0.161 4.161 22 C -0.083 4.083 23 C -0.209 4.209 24 C 0.130 3.870 25 O -0.322 6.322 26 C 0.016 3.984 27 H 0.100 0.900 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.007 0.993 33 H 0.062 0.938 34 H 0.266 0.734 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.095 0.905 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.137 0.863 43 H 0.155 0.845 44 H 0.154 0.846 45 H 0.115 0.885 46 H 0.056 0.944 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.526 -9.522 3.448 11.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.013 3.987 4 N -0.318 5.318 5 C 0.126 3.874 6 C -0.572 4.572 7 H 0.065 0.935 8 C -0.171 4.171 9 N -0.550 5.550 10 Si 0.769 3.231 11 H -0.199 1.199 12 H -0.205 1.205 13 H -0.203 1.203 14 C 0.312 3.688 15 O -0.476 6.476 16 C -0.025 4.025 17 C -0.206 4.206 18 C -0.167 4.167 19 C -0.112 4.112 20 C -0.115 4.115 21 C -0.180 4.180 22 C -0.101 4.101 23 C -0.227 4.227 24 C 0.084 3.916 25 O -0.236 6.236 26 C -0.078 4.078 27 H 0.118 0.882 28 H 0.139 0.861 29 H 0.121 0.879 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.025 0.975 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.133 0.867 42 H 0.155 0.845 43 H 0.172 0.828 44 H 0.172 0.828 45 H 0.133 0.867 46 H 0.075 0.925 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.769 -9.464 2.968 11.006 hybrid contribution -0.311 1.209 0.101 1.252 sum 4.458 -8.255 3.069 9.871 Atomic orbital electron populations 1.24014 0.95015 1.02985 0.98034 1.23142 0.96744 0.97751 1.02193 1.20515 0.92797 0.96195 0.89199 1.48214 1.09033 1.62363 1.12229 1.19522 0.94324 0.93476 0.80083 1.21567 1.42297 0.92638 1.00725 0.93523 1.25453 0.94734 1.01764 0.95182 1.70025 1.42721 1.36802 1.05472 0.85729 0.77841 0.81444 0.78061 1.19894 1.20482 1.20274 1.20771 0.82553 0.75281 0.90208 1.90542 1.74887 1.53147 1.29038 1.19480 0.95293 0.96446 0.91331 1.22356 1.05787 0.92286 1.00122 1.21555 0.93259 1.00606 1.01306 1.18880 0.98502 1.00085 0.93725 1.21193 0.94669 0.95271 1.00398 1.21203 1.01797 1.00139 0.94816 1.21245 0.94439 0.98366 0.96006 1.21479 1.00958 0.99545 1.00742 1.18767 0.88458 0.91565 0.92778 1.86132 1.43174 1.58955 1.35321 1.23323 0.99404 1.03546 0.81577 0.88216 0.86098 0.87914 0.90493 0.90684 0.97514 0.92089 0.92510 0.90692 0.94683 0.88615 0.93252 0.92901 0.90074 0.86709 0.84474 0.82782 0.82837 0.86660 0.92548 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.57 14.32 67.79 0.97 -3.60 16 2 C -0.18 -5.97 9.08 25.65 0.23 -5.74 16 3 C 0.14 5.33 5.96 85.63 0.51 5.84 16 4 N -0.59 -26.06 1.44 -830.50 -1.20 -27.26 16 5 C 0.25 11.98 3.54 85.63 0.30 12.28 16 6 C -0.53 -27.93 6.88 25.60 0.18 -27.76 16 7 H 0.05 2.53 7.81 -2.91 -0.02 2.51 16 8 C 0.03 1.54 5.29 84.66 0.45 1.99 16 9 N -0.91 -49.67 13.29 21.45 0.28 -49.38 16 10 Si 0.94 42.16 29.54 68.60 2.03 44.18 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 14 C 0.52 23.37 5.10 87.65 0.45 23.82 16 15 O -0.59 -28.45 15.40 -3.04 -0.05 -28.50 16 16 C -0.02 -0.92 0.48 -53.67 -0.03 -0.94 16 17 C -0.15 -6.36 6.86 71.98 0.49 -5.86 16 18 C -0.11 -3.95 7.60 71.98 0.55 -3.41 16 19 C -0.11 -4.24 3.13 -19.77 -0.06 -4.30 16 20 C -0.10 -3.62 7.35 22.25 0.16 -3.46 16 21 C -0.16 -5.01 10.04 22.28 0.22 -4.78 16 22 C -0.08 -2.23 10.04 22.25 0.22 -2.00 16 23 C -0.21 -5.84 9.04 22.37 0.20 -5.64 16 24 C 0.13 4.36 6.31 22.51 0.14 4.50 16 25 O -0.32 -9.82 6.42 -92.32 -0.59 -10.42 16 26 C 0.02 0.32 9.81 113.37 1.11 1.43 16 27 H 0.10 2.77 7.84 -2.91 -0.02 2.75 16 28 H 0.12 2.73 8.06 -2.91 -0.02 2.70 16 29 H 0.10 3.40 7.66 -2.91 -0.02 3.38 16 30 H 0.08 3.03 7.75 -2.39 -0.02 3.01 16 31 H 0.07 3.01 7.22 -2.39 -0.02 2.99 16 32 H 0.01 0.36 8.11 -2.39 -0.02 0.34 16 33 H 0.06 3.07 3.19 -2.38 -0.01 3.06 16 34 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 35 H 0.07 2.91 6.07 -2.39 -0.01 2.89 16 36 H 0.03 1.52 8.09 -2.39 -0.02 1.50 16 37 H 0.10 4.69 3.46 -2.39 -0.01 4.68 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.05 1.93 7.94 -2.39 -0.02 1.91 16 40 H 0.08 2.60 6.77 -2.38 -0.02 2.58 16 41 H 0.12 4.55 4.52 -2.91 -0.01 4.54 16 42 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 43 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 44 H 0.15 3.24 6.30 -2.91 -0.02 3.22 16 45 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.06 1.12 7.66 -2.38 -0.02 1.10 16 47 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 Total: -1.00 -63.71 365.07 7.55 -56.16 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.97 Total: 32.83 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 6.11 Total: -17.63 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -0.91 Total: -76.64 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -0.64 Total: -38.91 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -63.71 7.55 -56.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293958680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.231 kcal (2) G-P(sol) polarization free energy of solvation -63.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds