Wall clock time and date at job start Tue Mar 31 2020 12:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 119.99904 * 2 1 4 4 N 1.46497 * 109.47226 * 125.09238 * 3 2 1 5 5 C 1.46503 * 119.99922 * 276.65313 * 4 3 2 6 6 C 1.50710 * 109.46997 * 270.00174 * 5 4 3 7 7 H 1.07998 * 119.99856 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99987 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99957 * 359.97438 * 8 6 5 10 10 Si 1.86790 * 119.99891 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47332 * 60.00106 * 10 8 6 12 12 H 1.48497 * 109.47092 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47428 * 300.00134 * 10 8 6 14 14 C 1.34769 * 120.00524 * 96.65144 * 4 3 2 15 15 O 1.21284 * 120.00579 * 185.35567 * 14 4 3 16 16 C 1.50704 * 119.99951 * 5.62729 * 14 4 3 17 17 C 1.52998 * 109.47137 * 178.79562 * 16 14 4 18 18 C 1.52999 * 109.47443 * 298.80123 * 16 14 4 19 19 C 1.50702 * 109.46651 * 58.79974 * 16 14 4 20 20 C 1.38266 * 119.94472 * 7.44667 * 19 16 14 21 21 C 1.38148 * 120.05188 * 179.72709 * 20 19 16 22 22 C 1.38732 * 119.94551 * 0.57058 * 21 20 19 23 23 O 1.35899 * 120.05432 * 179.68414 * 22 21 20 24 24 C 1.42902 * 117.00377 * 0.02562 * 23 22 21 25 25 C 1.38726 * 119.88721 * 359.70146 * 22 21 20 26 26 C 1.38144 * 119.94870 * 0.02562 * 25 22 21 27 27 H 1.08003 * 119.99912 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00267 * 0.02562 * 1 2 3 29 29 H 1.08007 * 119.99536 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47240 * 5.08912 * 3 2 1 31 31 H 1.08998 * 109.46853 * 245.08521 * 3 2 1 32 32 H 1.09004 * 109.46804 * 29.99442 * 5 4 3 33 33 H 1.08996 * 109.47324 * 149.99957 * 5 4 3 34 34 H 0.96996 * 119.99929 * 179.97438 * 9 8 6 35 35 H 1.08994 * 109.47197 * 55.12006 * 17 16 14 36 36 H 1.09002 * 109.46991 * 175.11973 * 17 16 14 37 37 H 1.08996 * 109.47428 * 295.11757 * 17 16 14 38 38 H 1.08999 * 109.46862 * 69.96669 * 18 16 14 39 39 H 1.08998 * 109.47508 * 189.97232 * 18 16 14 40 40 H 1.09001 * 109.46722 * 309.97017 * 18 16 14 41 41 H 1.07995 * 119.97376 * 359.97438 * 20 19 16 42 42 H 1.08002 * 120.02875 * 180.25105 * 21 20 19 43 43 H 1.09006 * 109.47098 * 300.00564 * 24 23 22 44 44 H 1.09002 * 109.46723 * 59.99973 * 24 23 22 45 45 H 1.08997 * 109.47123 * 179.97438 * 24 23 22 46 46 H 1.07999 * 120.02829 * 179.97438 * 25 22 21 47 47 H 1.07995 * 119.97599 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9953 1.3310 1.1301 5 6 2.5233 1.7254 2.4598 6 6 2.6759 3.2156 2.6254 7 1 3.0840 3.8093 1.8208 8 6 2.2944 3.8209 3.8040 9 7 1.7970 3.0979 4.7835 10 14 2.4841 5.6677 4.0095 11 1 1.6834 6.3661 2.9720 12 1 2.0056 6.0676 5.3572 13 1 3.9148 6.0378 3.8628 14 6 4.2867 0.9920 0.9467 15 8 5.0357 0.9192 1.8979 16 6 4.8018 0.7093 -0.4411 17 6 6.2944 0.3802 -0.3739 18 6 4.0435 -0.4798 -1.0342 19 6 4.5935 1.9223 -1.3108 20 6 4.1493 3.1055 -0.7502 21 6 3.9630 4.2204 -1.5445 22 6 4.2106 4.1487 -2.9076 23 8 4.0219 5.2422 -3.6921 24 6 3.5675 6.4333 -3.0464 25 6 4.6508 2.9587 -3.4686 26 6 4.8410 1.8482 -2.6692 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3587 2.1315 0.0912 31 1 2.6200 1.4032 -0.9320 32 1 1.4733 1.4534 2.5680 33 1 3.1117 1.2131 3.2209 34 1 1.5290 3.5237 5.6128 35 1 6.4541 -0.4424 0.3231 36 1 6.6478 0.0915 -1.3638 37 1 6.8449 1.2571 -0.0332 38 1 3.0156 -0.1858 -1.2466 39 1 4.5290 -0.7966 -1.9572 40 1 4.0456 -1.3042 -0.3211 41 1 3.9517 3.1594 0.3102 42 1 3.6199 5.1456 -1.1055 43 1 2.6050 6.2443 -2.5709 44 1 4.2926 6.7363 -2.2911 45 1 3.4588 7.2279 -3.7846 46 1 4.8438 2.9002 -4.5296 47 1 5.1833 0.9215 -3.1055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294017366.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:05 Heat of formation + Delta-G solvation = -11.122628 kcal Electronic energy + Delta-G solvation = -28249.984338 eV Core-core repulsion = 24592.582305 eV Total energy + Delta-G solvation = -3657.402033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.84326 -39.45741 -37.30700 -35.78851 -34.51777 -33.11033 -32.09365 -30.95832 -29.16064 -27.93734 -27.28484 -26.79182 -25.55288 -23.94905 -22.54853 -22.16860 -20.53222 -19.94079 -18.17159 -17.95857 -16.71639 -16.53331 -16.11566 -15.77872 -15.67028 -14.99656 -14.61333 -14.53390 -14.09499 -13.91884 -13.50209 -13.35581 -13.29756 -12.90210 -12.77044 -12.51831 -12.33532 -12.14099 -12.05700 -11.96189 -11.51262 -11.46051 -11.25743 -11.09166 -11.04727 -10.96093 -10.70435 -10.64052 -10.58268 -10.45568 -10.15841 -9.66613 -9.14054 -8.82362 -8.80424 -8.46003 -7.91762 -7.64291 -6.07132 -4.12614 1.47097 1.54192 2.49065 3.26707 3.28930 3.32507 3.32767 3.41050 3.86724 3.99678 4.40395 4.80895 4.83490 4.96411 5.03137 5.13499 5.17957 5.25599 5.26868 5.29466 5.36448 5.41607 5.47397 5.52907 5.58807 5.72837 5.76217 5.78124 5.94015 6.00045 6.06661 6.08952 6.18673 6.23171 6.29957 6.44180 6.50766 6.61644 6.78918 6.84084 6.86751 6.96514 7.12658 7.43865 7.46189 7.56175 7.89874 8.19834 8.41746 8.85629 9.07825 9.52500 11.00757 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009238 B = 0.006154 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.383615 B = 4548.955734 C = 5983.267294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.169 4.169 3 C 0.121 3.879 4 N -0.590 5.590 5 C 0.246 3.754 6 C -0.529 4.529 7 H 0.058 0.942 8 C 0.064 3.936 9 N -0.891 5.891 10 Si 0.893 3.107 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.518 3.482 15 O -0.537 6.537 16 C -0.041 4.041 17 C -0.120 4.120 18 C -0.156 4.156 19 C -0.108 4.108 20 C -0.074 4.074 21 C -0.201 4.201 22 C 0.120 3.880 23 O -0.322 6.322 24 C 0.027 3.973 25 C -0.157 4.157 26 C -0.074 4.074 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.153 0.847 42 H 0.128 0.872 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.097 0.903 46 H 0.127 0.873 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.682 -1.967 -17.487 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.189 4.189 3 C -0.002 4.002 4 N -0.321 5.321 5 C 0.127 3.873 6 C -0.568 4.568 7 H 0.076 0.924 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.721 3.279 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.304 3.696 15 O -0.414 6.414 16 C -0.044 4.044 17 C -0.177 4.177 18 C -0.213 4.213 19 C -0.109 4.109 20 C -0.092 4.092 21 C -0.220 4.220 22 C 0.076 3.924 23 O -0.235 6.235 24 C -0.069 4.069 25 C -0.175 4.175 26 C -0.092 4.092 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.170 0.830 42 H 0.146 0.854 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.115 0.885 46 H 0.145 0.855 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.023 -1.949 -16.948 17.179 hybrid contribution -0.186 1.258 0.519 1.374 sum 1.837 -0.691 -16.429 16.546 Atomic orbital electron populations 1.23816 0.95898 1.01654 1.00760 1.23561 0.96328 0.99243 0.99728 1.21036 0.93200 0.95003 0.90964 1.48186 1.07516 1.64968 1.11415 1.19276 0.95245 0.95139 0.77666 1.21391 1.42507 0.92560 1.00333 0.92437 1.24903 0.95066 0.98263 0.95609 1.69919 1.42306 1.35633 1.05124 0.86636 0.78594 0.85379 0.77314 1.20260 1.21111 1.20139 1.20110 0.82547 0.77206 0.89736 1.90663 1.55969 1.51981 1.42750 1.19733 0.97806 0.94063 0.92844 1.21630 0.92373 1.02582 1.01160 1.22431 1.01635 0.96551 1.00716 1.19456 1.02975 0.94718 0.93735 1.21739 0.94096 0.91165 1.02201 1.21278 1.07563 1.00525 0.92587 1.19067 0.96537 0.87228 0.89602 1.86015 1.82165 1.18810 1.36555 1.23047 0.99444 0.85231 0.99139 1.20271 1.06130 0.90839 1.00274 1.20688 0.98401 0.97666 0.92457 0.88807 0.88442 0.87293 0.90176 0.88791 0.94957 0.93802 0.92637 0.91646 0.92491 0.92038 0.89939 0.91910 0.91990 0.82964 0.85446 0.92432 0.92604 0.88498 0.85523 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 14.32 29.01 0.42 -2.07 16 2 C -0.17 -2.51 8.16 -36.03 -0.29 -2.80 16 3 C 0.12 2.04 4.07 -5.20 -0.02 2.02 16 4 N -0.59 -12.25 1.45 -176.43 -0.26 -12.51 16 5 C 0.25 6.32 5.22 -5.19 -0.03 6.30 16 6 C -0.53 -14.48 9.26 -34.44 -0.32 -14.80 16 7 H 0.06 1.53 5.93 -52.49 -0.31 1.22 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 10 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.52 10.70 5.14 -10.99 -0.06 10.64 16 15 O -0.54 -13.42 15.47 5.55 0.09 -13.33 16 16 C -0.04 -0.64 0.59 -156.81 -0.09 -0.73 16 17 C -0.12 -1.75 7.65 37.16 0.28 -1.46 16 18 C -0.16 -1.96 6.67 37.16 0.25 -1.71 16 19 C -0.11 -1.62 3.04 -104.60 -0.32 -1.94 16 20 C -0.07 -1.27 7.25 -39.60 -0.29 -1.56 16 21 C -0.20 -3.08 9.04 -39.43 -0.36 -3.44 16 22 C 0.12 1.69 6.69 -39.22 -0.26 1.43 16 23 O -0.32 -4.18 10.50 -19.42 -0.20 -4.39 16 24 C 0.03 0.26 9.81 101.05 0.99 1.26 16 25 C -0.16 -1.98 9.99 -39.44 -0.39 -2.37 16 26 C -0.07 -0.92 8.93 -39.60 -0.35 -1.28 16 27 H 0.09 1.09 8.06 -52.48 -0.42 0.67 16 28 H 0.10 1.32 7.84 -52.49 -0.41 0.91 16 29 H 0.11 1.51 6.58 -52.48 -0.35 1.17 16 30 H 0.08 1.42 7.77 -51.93 -0.40 1.02 16 31 H 0.09 1.44 3.14 -51.93 -0.16 1.27 16 32 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.04 1.29 7.35 -51.93 -0.38 0.91 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.06 0.98 7.94 -51.93 -0.41 0.57 16 36 H 0.06 0.65 8.02 -51.93 -0.42 0.23 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.02 3.48 -51.93 -0.18 0.84 16 39 H 0.06 0.62 7.35 -51.93 -0.38 0.24 16 40 H 0.06 0.79 7.96 -51.93 -0.41 0.38 16 41 H 0.15 3.15 3.65 -52.49 -0.19 2.95 16 42 H 0.13 1.85 6.30 -52.49 -0.33 1.52 16 43 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 44 H 0.06 0.54 7.66 -51.93 -0.40 0.15 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 47 H 0.13 1.25 7.31 -52.49 -0.38 0.87 16 LS Contribution 367.58 15.07 5.54 5.54 Total: -1.00 -32.03 367.58 -6.83 -38.86 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.77 Total: 5.72 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -0.94 Total: -10.82 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.48 Total: -37.93 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.12 Total: -17.72 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.03 -6.83 -38.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294017366.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.733 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds