Wall clock time and date at job start Tue Mar 31 2020 12:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 119.99904 * 2 1 4 4 N 1.46497 * 109.47226 * 125.09238 * 3 2 1 5 5 C 1.46503 * 119.99922 * 276.65313 * 4 3 2 6 6 C 1.50710 * 109.46997 * 270.00174 * 5 4 3 7 7 H 1.07998 * 119.99856 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99987 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99957 * 359.97438 * 8 6 5 10 10 Si 1.86790 * 119.99891 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47332 * 60.00106 * 10 8 6 12 12 H 1.48497 * 109.47092 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47428 * 300.00134 * 10 8 6 14 14 C 1.34769 * 120.00524 * 96.65144 * 4 3 2 15 15 O 1.21284 * 120.00579 * 185.35567 * 14 4 3 16 16 C 1.50704 * 119.99951 * 5.62729 * 14 4 3 17 17 C 1.52998 * 109.47137 * 178.79562 * 16 14 4 18 18 C 1.52999 * 109.47443 * 298.80123 * 16 14 4 19 19 C 1.50702 * 109.46651 * 58.79974 * 16 14 4 20 20 C 1.38266 * 119.94472 * 7.44667 * 19 16 14 21 21 C 1.38148 * 120.05188 * 179.72709 * 20 19 16 22 22 C 1.38732 * 119.94551 * 0.57058 * 21 20 19 23 23 O 1.35899 * 120.05432 * 179.68414 * 22 21 20 24 24 C 1.42902 * 117.00377 * 0.02562 * 23 22 21 25 25 C 1.38726 * 119.88721 * 359.70146 * 22 21 20 26 26 C 1.38144 * 119.94870 * 0.02562 * 25 22 21 27 27 H 1.08003 * 119.99912 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00267 * 0.02562 * 1 2 3 29 29 H 1.08007 * 119.99536 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47240 * 5.08912 * 3 2 1 31 31 H 1.08998 * 109.46853 * 245.08521 * 3 2 1 32 32 H 1.09004 * 109.46804 * 29.99442 * 5 4 3 33 33 H 1.08996 * 109.47324 * 149.99957 * 5 4 3 34 34 H 0.96996 * 119.99929 * 179.97438 * 9 8 6 35 35 H 1.08994 * 109.47197 * 55.12006 * 17 16 14 36 36 H 1.09002 * 109.46991 * 175.11973 * 17 16 14 37 37 H 1.08996 * 109.47428 * 295.11757 * 17 16 14 38 38 H 1.08999 * 109.46862 * 69.96669 * 18 16 14 39 39 H 1.08998 * 109.47508 * 189.97232 * 18 16 14 40 40 H 1.09001 * 109.46722 * 309.97017 * 18 16 14 41 41 H 1.07995 * 119.97376 * 359.97438 * 20 19 16 42 42 H 1.08002 * 120.02875 * 180.25105 * 21 20 19 43 43 H 1.09006 * 109.47098 * 300.00564 * 24 23 22 44 44 H 1.09002 * 109.46723 * 59.99973 * 24 23 22 45 45 H 1.08997 * 109.47123 * 179.97438 * 24 23 22 46 46 H 1.07999 * 120.02829 * 179.97438 * 25 22 21 47 47 H 1.07995 * 119.97599 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9953 1.3310 1.1301 5 6 2.5233 1.7254 2.4598 6 6 2.6759 3.2156 2.6254 7 1 3.0840 3.8093 1.8208 8 6 2.2944 3.8209 3.8040 9 7 1.7970 3.0979 4.7835 10 14 2.4841 5.6677 4.0095 11 1 1.6834 6.3661 2.9720 12 1 2.0056 6.0676 5.3572 13 1 3.9148 6.0378 3.8628 14 6 4.2867 0.9920 0.9467 15 8 5.0357 0.9192 1.8979 16 6 4.8018 0.7093 -0.4411 17 6 6.2944 0.3802 -0.3739 18 6 4.0435 -0.4798 -1.0342 19 6 4.5935 1.9223 -1.3108 20 6 4.1493 3.1055 -0.7502 21 6 3.9630 4.2204 -1.5445 22 6 4.2106 4.1487 -2.9076 23 8 4.0219 5.2422 -3.6921 24 6 3.5675 6.4333 -3.0464 25 6 4.6508 2.9587 -3.4686 26 6 4.8410 1.8482 -2.6692 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3587 2.1315 0.0912 31 1 2.6200 1.4032 -0.9320 32 1 1.4733 1.4534 2.5680 33 1 3.1117 1.2131 3.2209 34 1 1.5290 3.5237 5.6128 35 1 6.4541 -0.4424 0.3231 36 1 6.6478 0.0915 -1.3638 37 1 6.8449 1.2571 -0.0332 38 1 3.0156 -0.1858 -1.2466 39 1 4.5290 -0.7966 -1.9572 40 1 4.0456 -1.3042 -0.3211 41 1 3.9517 3.1594 0.3102 42 1 3.6199 5.1456 -1.1055 43 1 2.6050 6.2443 -2.5709 44 1 4.2926 6.7363 -2.2911 45 1 3.4588 7.2279 -3.7846 46 1 4.8438 2.9002 -4.5296 47 1 5.1833 0.9215 -3.1055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294017366.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:04 Heat of formation + Delta-G solvation = -29.534943 kcal Electronic energy + Delta-G solvation = -28250.782756 eV Core-core repulsion = 24592.582305 eV Total energy + Delta-G solvation = -3658.200451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.16245 -40.63312 -38.55161 -37.36174 -35.85824 -34.89762 -33.74417 -32.07264 -30.20931 -29.76800 -28.22358 -28.02968 -26.96369 -25.68265 -23.76473 -23.50936 -21.89652 -21.17176 -19.42499 -19.30410 -18.55352 -18.00308 -17.53046 -17.10352 -16.64536 -16.41984 -16.32164 -15.84178 -15.37998 -15.20457 -14.85034 -14.56135 -14.50380 -14.30277 -14.08641 -14.01125 -13.71311 -13.45377 -13.23716 -13.09222 -13.02127 -12.90049 -12.71951 -12.63913 -12.58338 -12.31753 -12.21748 -12.07541 -11.83420 -11.80479 -11.66416 -11.48143 -10.66608 -10.47081 -10.33077 -9.91911 -9.42690 -9.00359 -8.24209 -6.38795 0.39917 0.41636 1.29921 1.31645 1.35714 1.42616 1.79376 2.30986 2.38173 2.48263 2.77184 3.05254 3.50814 3.66675 3.91903 3.95678 4.07289 4.12187 4.16123 4.26241 4.33092 4.35214 4.43202 4.46494 4.57213 4.68736 4.74019 4.76423 4.80910 4.90084 4.91884 4.96360 5.03957 5.06783 5.08846 5.21365 5.25111 5.35666 5.38807 5.45759 5.54827 5.66760 5.68993 5.76064 5.80402 5.95824 6.04408 6.42769 6.68007 6.76706 7.25851 7.45195 8.82915 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009238 B = 0.006154 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.383615 B = 4548.955734 C = 5983.267294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.187 4.187 3 C 0.125 3.875 4 N -0.589 5.589 5 C 0.264 3.736 6 C -0.541 4.541 7 H 0.058 0.942 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.960 3.040 11 H -0.259 1.259 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.508 3.492 15 O -0.595 6.595 16 C -0.031 4.031 17 C -0.118 4.118 18 C -0.154 4.154 19 C -0.115 4.115 20 C -0.101 4.101 21 C -0.212 4.212 22 C 0.118 3.882 23 O -0.327 6.327 24 C 0.019 3.981 25 C -0.148 4.148 26 C -0.057 4.057 27 H 0.120 0.880 28 H 0.094 0.906 29 H 0.122 0.878 30 H 0.062 0.938 31 H 0.115 0.885 32 H 0.018 0.982 33 H -0.004 1.004 34 H 0.266 0.734 35 H 0.053 0.947 36 H 0.102 0.898 37 H 0.036 0.964 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.056 0.944 41 H 0.108 0.892 42 H 0.123 0.877 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.126 0.874 46 H 0.158 0.842 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.748 -2.093 -21.540 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.206 4.206 3 C 0.003 3.997 4 N -0.318 5.318 5 C 0.143 3.857 6 C -0.579 4.579 7 H 0.076 0.924 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.784 3.216 11 H -0.183 1.183 12 H -0.203 1.203 13 H -0.203 1.203 14 C 0.298 3.702 15 O -0.477 6.477 16 C -0.034 4.034 17 C -0.175 4.175 18 C -0.210 4.210 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.231 4.231 22 C 0.073 3.927 23 O -0.240 6.240 24 C -0.075 4.075 25 C -0.167 4.167 26 C -0.074 4.074 27 H 0.138 0.862 28 H 0.112 0.888 29 H 0.140 0.860 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.036 0.964 33 H 0.014 0.986 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.120 0.880 37 H 0.055 0.945 38 H 0.103 0.897 39 H 0.124 0.876 40 H 0.075 0.925 41 H 0.126 0.874 42 H 0.141 0.859 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.144 0.856 46 H 0.175 0.825 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.058 -2.074 -21.051 21.253 hybrid contribution -0.232 1.330 1.759 2.218 sum 1.826 -0.744 -19.292 19.392 Atomic orbital electron populations 1.24055 0.95548 1.02795 0.98317 1.23490 0.96787 0.98462 1.01870 1.21168 0.92532 0.95833 0.90138 1.48088 1.08675 1.64535 1.10545 1.18677 0.93337 0.94108 0.79589 1.21694 1.42176 0.93447 1.00613 0.92361 1.25812 0.94610 1.03254 0.95218 1.70051 1.43258 1.37682 1.05647 0.85580 0.78505 0.79548 0.77933 1.18311 1.20324 1.20324 1.21199 0.81713 0.75614 0.91712 1.90618 1.57228 1.54549 1.45260 1.19723 0.98570 0.95886 0.89231 1.21660 0.91386 1.01118 1.03331 1.22466 1.01733 0.94687 1.02160 1.19417 1.03768 0.93398 0.94983 1.21417 0.96980 0.93207 1.00297 1.21238 1.08391 0.99928 0.93565 1.19239 0.96212 0.88337 0.88900 1.86014 1.82089 1.19211 1.36711 1.23278 0.99171 0.84939 1.00118 1.20686 1.04294 0.89913 1.01756 1.21015 0.96548 0.99223 0.90648 0.86170 0.88778 0.85997 0.91937 0.86707 0.96433 0.98626 0.92461 0.92784 0.87962 0.94505 0.89729 0.87647 0.92502 0.87434 0.85897 0.92601 0.92818 0.85564 0.82466 0.81348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.37 14.32 67.78 0.97 -3.40 16 2 C -0.19 -5.40 8.16 25.64 0.21 -5.19 16 3 C 0.13 4.30 4.07 85.63 0.35 4.65 16 4 N -0.59 -25.91 1.45 -830.50 -1.20 -27.11 16 5 C 0.26 14.65 5.22 85.64 0.45 15.10 16 6 C -0.54 -31.40 9.26 25.60 0.24 -31.16 16 7 H 0.06 3.31 5.93 -2.91 -0.02 3.29 16 8 C 0.01 0.59 5.46 84.65 0.46 1.06 16 9 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 10 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 11 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 14 C 0.51 22.11 5.14 87.66 0.45 22.56 16 15 O -0.60 -32.08 15.47 -3.04 -0.05 -32.13 16 16 C -0.03 -0.93 0.59 -53.67 -0.03 -0.97 16 17 C -0.12 -3.27 7.65 71.98 0.55 -2.72 16 18 C -0.15 -3.39 6.67 71.98 0.48 -2.91 16 19 C -0.12 -3.27 3.04 -19.85 -0.06 -3.33 16 20 C -0.10 -3.52 7.25 22.25 0.16 -3.35 16 21 C -0.21 -6.51 9.04 22.37 0.20 -6.31 16 22 C 0.12 3.06 6.69 22.50 0.15 3.21 16 23 O -0.33 -7.69 10.50 -92.42 -0.97 -8.66 16 24 C 0.02 0.36 9.81 113.37 1.11 1.47 16 25 C -0.15 -3.11 9.99 22.36 0.22 -2.89 16 26 C -0.06 -1.16 8.93 22.26 0.20 -0.96 16 27 H 0.12 2.48 8.06 -2.91 -0.02 2.45 16 28 H 0.09 2.48 7.84 -2.91 -0.02 2.46 16 29 H 0.12 3.21 6.58 -2.91 -0.02 3.19 16 30 H 0.06 2.33 7.77 -2.39 -0.02 2.31 16 31 H 0.12 3.44 3.14 -2.39 -0.01 3.43 16 32 H 0.02 1.01 8.07 -2.38 -0.02 0.99 16 33 H 0.00 -0.28 7.35 -2.39 -0.02 -0.30 16 34 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.05 1.61 7.94 -2.39 -0.02 1.59 16 36 H 0.10 1.89 8.02 -2.39 -0.02 1.87 16 37 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 1.85 3.48 -2.39 -0.01 1.84 16 39 H 0.10 1.46 7.35 -2.39 -0.02 1.45 16 40 H 0.06 1.33 7.96 -2.39 -0.02 1.31 16 41 H 0.11 4.76 3.65 -2.91 -0.01 4.75 16 42 H 0.12 3.70 6.30 -2.91 -0.02 3.69 16 43 H 0.06 1.04 7.66 -2.38 -0.02 1.02 16 44 H 0.05 1.00 7.66 -2.39 -0.02 0.98 16 45 H 0.13 1.52 8.14 -2.39 -0.02 1.51 16 46 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 47 H 0.17 2.10 7.31 -2.91 -0.02 2.08 16 Total: -1.00 -76.49 367.58 7.18 -69.32 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.97 Total: 23.09 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 6.11 Total: -15.16 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -0.92 Total: -83.66 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -1.02 Total: -40.79 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -76.49 7.18 -69.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294017366.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.781 kcal (2) G-P(sol) polarization free energy of solvation -76.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds