Wall clock time and date at job start Tue Mar 31 2020 13:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 119.99797 * 2 1 4 4 C 1.53001 * 109.47017 * 125.00462 * 3 2 1 5 5 C 1.52995 * 109.47329 * 59.99833 * 4 3 2 6 6 C 1.53002 * 109.47001 * 299.99713 * 4 3 2 7 7 C 1.53004 * 109.47255 * 180.02562 * 4 3 2 8 8 N 1.46495 * 109.47156 * 179.97438 * 7 4 3 9 9 C 1.34775 * 120.00172 * 179.97438 * 8 7 4 10 10 O 1.21287 * 119.99798 * 0.02562 * 9 8 7 11 11 C 1.50705 * 120.00246 * 179.97438 * 9 8 7 12 12 C 1.50695 * 109.46992 * 180.02562 * 11 9 8 13 13 C 1.38299 * 119.93247 * 90.00201 * 12 11 9 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47448 * 89.99502 * 21 19 17 23 23 H 1.48501 * 109.47175 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47415 * 329.99678 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.07992 * 119.99829 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99797 * 179.97438 * 1 2 3 29 29 H 1.07996 * 120.00228 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46987 * 5.00428 * 3 2 1 31 31 H 1.08994 * 109.47703 * 245.00415 * 3 2 1 32 32 H 1.08998 * 109.46857 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.46961 * 300.00468 * 5 4 3 34 34 H 1.09005 * 109.47091 * 60.00291 * 5 4 3 35 35 H 1.09003 * 109.47457 * 300.00312 * 6 4 3 36 36 H 1.09009 * 109.47187 * 60.00253 * 6 4 3 37 37 H 1.08995 * 109.47293 * 179.97438 * 6 4 3 38 38 H 1.08998 * 109.47672 * 59.99342 * 7 4 3 39 39 H 1.09005 * 109.46733 * 299.99443 * 7 4 3 40 40 H 0.97005 * 120.00223 * 359.97438 * 8 7 4 41 41 H 1.08998 * 109.46621 * 60.00483 * 11 9 8 42 42 H 1.08996 * 109.47266 * 300.00146 * 11 9 8 43 43 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 44 44 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 45 45 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 46 46 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 47 47 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 4.0246 0.1729 1.0558 6 6 2.2522 1.1961 2.4890 7 6 3.7996 2.6583 1.1820 8 7 4.7295 2.6853 2.3137 9 6 5.5143 3.7623 2.5155 10 8 5.4504 4.7093 1.7605 11 6 6.4705 3.7903 3.6801 12 6 7.2235 5.0956 3.6804 13 6 6.7176 6.1840 4.3673 14 6 7.4055 7.3815 4.3700 15 6 8.6065 7.4921 3.6813 16 8 9.2854 8.6676 3.6825 17 6 8.8004 9.6538 4.4637 18 1 7.8662 9.5174 4.9880 19 6 9.5012 10.8432 4.5937 20 7 10.6394 11.0093 3.9554 21 14 8.8297 12.2092 5.6766 22 1 9.3446 12.0430 7.0595 23 1 9.2645 13.5243 5.1411 24 1 7.3460 12.1462 5.6899 25 6 9.1089 6.3992 2.9872 26 6 8.4189 5.2028 2.9932 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4027 -0.9313 32 1 4.7164 0.1926 1.8978 33 1 3.4796 -0.7710 1.0557 34 1 4.5824 0.2705 0.1244 35 1 1.5472 2.0227 2.5786 36 1 1.7072 0.2521 2.4890 37 1 2.9444 1.2156 3.3307 38 1 3.0945 3.4847 1.2718 39 1 4.3574 2.7563 0.2506 40 1 4.7804 1.9281 2.9178 41 1 7.1754 2.9637 3.5912 42 1 5.9121 3.6932 4.6111 43 1 5.7838 6.0973 4.9030 44 1 7.0101 8.2309 4.9070 45 1 11.1294 11.8415 4.0461 46 1 10.0403 6.4834 2.4471 47 1 8.8113 4.3512 2.4573 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294131333.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:35 Heat of formation + Delta-G solvation = -37.414585 kcal Electronic energy + Delta-G solvation = -25367.051084 eV Core-core repulsion = 21708.508946 eV Total energy + Delta-G solvation = -3658.542138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.02758 -38.96485 -38.21661 -36.41766 -34.63582 -32.64861 -32.34740 -31.20971 -30.08418 -27.70641 -27.57115 -27.08642 -25.68652 -24.79100 -21.90785 -21.19196 -20.44569 -20.06393 -19.05471 -17.91907 -17.08108 -16.85412 -16.15904 -15.72486 -15.39965 -14.86722 -14.64617 -14.52599 -14.27445 -14.19725 -13.84035 -13.59773 -13.47595 -13.36769 -13.30412 -12.76099 -12.63953 -12.45998 -12.18233 -12.04705 -11.77903 -11.76207 -11.45900 -11.36086 -11.22088 -11.10357 -10.88409 -10.75891 -10.69635 -10.56521 -10.38336 -9.75219 -9.59226 -9.26951 -9.06393 -8.76860 -8.08263 -7.09750 -6.39583 -3.97978 1.89076 2.31512 2.33408 2.84828 3.15326 3.16934 3.21946 3.29383 4.01448 4.21927 4.36170 4.45787 4.60977 4.73556 4.81853 4.96194 5.04620 5.16766 5.17180 5.29811 5.32776 5.33596 5.36583 5.38923 5.42767 5.48958 5.57877 5.61411 5.67489 5.70754 5.73096 5.79692 5.90990 5.92075 5.94418 6.24214 6.28156 6.37945 6.42636 6.48519 6.77066 6.98237 7.11707 7.30420 7.43743 7.49861 7.53462 7.90860 8.05925 8.39739 9.06184 9.77536 10.78659 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.030109 B = 0.002002 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.732510 B =13981.320187 C =14344.532574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C -0.084 4.084 4 C -0.071 4.071 5 C -0.144 4.144 6 C -0.141 4.141 7 C 0.129 3.871 8 N -0.738 5.738 9 C 0.507 3.493 10 O -0.521 6.521 11 C -0.080 4.080 12 C -0.169 4.169 13 C -0.057 4.057 14 C -0.232 4.232 15 C 0.156 3.844 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.192 4.192 26 C -0.060 4.060 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.396 0.604 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.126 0.874 45 H 0.269 0.731 46 H 0.116 0.884 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.547 -23.635 -2.982 29.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.164 4.164 3 C -0.122 4.122 4 C -0.072 4.072 5 C -0.201 4.201 6 C -0.199 4.199 7 C 0.005 3.995 8 N -0.393 5.393 9 C 0.294 3.706 10 O -0.395 6.395 11 C -0.120 4.120 12 C -0.170 4.170 13 C -0.075 4.075 14 C -0.252 4.252 15 C 0.103 3.897 16 O -0.082 6.082 17 C -0.467 4.467 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.211 4.211 26 C -0.078 4.078 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.231 0.769 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.121 0.879 44 H 0.144 0.856 45 H 0.079 0.921 46 H 0.134 0.866 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.203 -22.639 -3.688 28.084 hybrid contribution -0.455 0.279 0.796 0.958 sum -16.658 -22.360 -2.892 28.033 Atomic orbital electron populations 1.23860 0.95999 1.01797 1.01776 1.22906 0.95857 0.98398 0.99259 1.20770 0.97765 0.95785 0.97855 1.20758 0.95361 0.94971 0.96086 1.21929 0.98515 0.97492 1.02176 1.21891 0.99903 1.02178 0.95890 1.21326 0.91869 0.96425 0.89836 1.46128 1.41839 1.20284 1.31070 1.21050 0.80834 0.81838 0.86888 1.90748 1.67112 1.34949 1.46701 1.20403 0.97012 0.98096 0.96485 1.18634 0.97611 0.94346 1.06427 1.20504 0.97461 0.92298 0.97261 1.21103 0.97815 0.98766 1.07487 1.19386 0.90676 0.86942 0.92719 1.83976 1.48384 1.17229 1.58652 1.21326 1.07105 0.92715 1.25523 0.89105 1.25284 0.95557 0.97954 0.97789 1.70041 1.13676 1.26190 1.39982 0.85716 0.79044 0.79392 0.79293 1.19921 1.20293 1.19225 1.20152 1.02450 0.91849 1.06643 1.20397 0.94145 0.96225 0.97051 0.88635 0.88667 0.87304 0.91081 0.90557 0.92523 0.92153 0.92263 0.92408 0.92150 0.92616 0.91652 0.91602 0.76863 0.89069 0.89112 0.87865 0.85610 0.92094 0.86566 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.10 14.32 29.01 0.42 -0.69 16 2 C -0.15 -0.83 7.65 -36.03 -0.28 -1.10 16 3 C -0.08 -0.52 4.73 -27.89 -0.13 -0.65 16 4 C -0.07 -0.45 0.55 -154.51 -0.09 -0.54 16 5 C -0.14 -0.81 8.04 37.16 0.30 -0.51 16 6 C -0.14 -0.85 8.05 37.16 0.30 -0.55 16 7 C 0.13 1.20 4.56 -4.04 -0.02 1.18 16 8 N -0.74 -7.14 4.96 -60.29 -0.30 -7.44 16 9 C 0.51 7.07 7.82 -10.98 -0.09 6.98 16 10 O -0.52 -10.00 16.03 5.55 0.09 -9.92 16 11 C -0.08 -1.02 5.83 -29.04 -0.17 -1.19 16 12 C -0.17 -3.02 4.38 -104.58 -0.46 -3.47 16 13 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 14 C -0.23 -5.34 9.17 -39.39 -0.36 -5.70 16 15 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 16 O -0.18 -5.30 9.76 0.05 0.00 -5.30 16 17 C -0.39 -11.24 9.49 30.89 0.29 -10.95 16 18 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.88 13.67 55.48 0.76 -25.12 16 21 Si 0.94 21.02 29.55 -169.99 -5.02 16.00 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 C -0.19 -4.29 9.99 -39.39 -0.39 -4.68 16 26 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 27 H 0.10 0.53 7.84 -52.49 -0.41 0.11 16 28 H 0.09 0.45 8.06 -52.49 -0.42 0.03 16 29 H 0.11 0.55 6.80 -52.49 -0.36 0.19 16 30 H 0.07 0.46 7.79 -51.93 -0.40 0.05 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.30 6.86 -51.93 -0.36 -0.06 16 33 H 0.06 0.29 6.53 -51.93 -0.34 -0.05 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.34 7.22 -51.92 -0.37 -0.04 16 37 H 0.05 0.31 6.86 -51.93 -0.36 -0.04 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.40 2.70 6.16 -40.82 -0.25 2.45 16 41 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 42 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 43 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 47 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 385.73 15.07 5.81 5.81 Total: -1.00 -34.46 385.73 -7.66 -42.12 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -7.20 Total: 4.04 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -1.80 Total: -20.19 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.46 Total: -32.56 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.09 Total: -15.21 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.46 -7.66 -42.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294131333.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.703 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds