Wall clock time and date at job start Tue Mar 31 2020 13:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 119.99797 * 2 1 4 4 C 1.53001 * 109.47017 * 125.00462 * 3 2 1 5 5 C 1.52995 * 109.47329 * 59.99833 * 4 3 2 6 6 C 1.53002 * 109.47001 * 299.99713 * 4 3 2 7 7 C 1.53004 * 109.47255 * 180.02562 * 4 3 2 8 8 N 1.46495 * 109.47156 * 179.97438 * 7 4 3 9 9 C 1.34775 * 120.00172 * 179.97438 * 8 7 4 10 10 O 1.21287 * 119.99798 * 0.02562 * 9 8 7 11 11 C 1.50705 * 120.00246 * 179.97438 * 9 8 7 12 12 C 1.50695 * 109.46992 * 180.02562 * 11 9 8 13 13 C 1.38299 * 119.93247 * 90.00201 * 12 11 9 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47448 * 89.99502 * 21 19 17 23 23 H 1.48501 * 109.47175 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47415 * 329.99678 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.07992 * 119.99829 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99797 * 179.97438 * 1 2 3 29 29 H 1.07996 * 120.00228 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46987 * 5.00428 * 3 2 1 31 31 H 1.08994 * 109.47703 * 245.00415 * 3 2 1 32 32 H 1.08998 * 109.46857 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.46961 * 300.00468 * 5 4 3 34 34 H 1.09005 * 109.47091 * 60.00291 * 5 4 3 35 35 H 1.09003 * 109.47457 * 300.00312 * 6 4 3 36 36 H 1.09009 * 109.47187 * 60.00253 * 6 4 3 37 37 H 1.08995 * 109.47293 * 179.97438 * 6 4 3 38 38 H 1.08998 * 109.47672 * 59.99342 * 7 4 3 39 39 H 1.09005 * 109.46733 * 299.99443 * 7 4 3 40 40 H 0.97005 * 120.00223 * 359.97438 * 8 7 4 41 41 H 1.08998 * 109.46621 * 60.00483 * 11 9 8 42 42 H 1.08996 * 109.47266 * 300.00146 * 11 9 8 43 43 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 44 44 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 45 45 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 46 46 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 47 47 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 4.0246 0.1729 1.0558 6 6 2.2522 1.1961 2.4890 7 6 3.7996 2.6583 1.1820 8 7 4.7295 2.6853 2.3137 9 6 5.5143 3.7623 2.5155 10 8 5.4504 4.7093 1.7605 11 6 6.4705 3.7903 3.6801 12 6 7.2235 5.0956 3.6804 13 6 6.7176 6.1840 4.3673 14 6 7.4055 7.3815 4.3700 15 6 8.6065 7.4921 3.6813 16 8 9.2854 8.6676 3.6825 17 6 8.8004 9.6538 4.4637 18 1 7.8662 9.5174 4.9880 19 6 9.5012 10.8432 4.5937 20 7 10.6394 11.0093 3.9554 21 14 8.8297 12.2092 5.6766 22 1 9.3446 12.0430 7.0595 23 1 9.2645 13.5243 5.1411 24 1 7.3460 12.1462 5.6899 25 6 9.1089 6.3992 2.9872 26 6 8.4189 5.2028 2.9932 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4027 -0.9313 32 1 4.7164 0.1926 1.8978 33 1 3.4796 -0.7710 1.0557 34 1 4.5824 0.2705 0.1244 35 1 1.5472 2.0227 2.5786 36 1 1.7072 0.2521 2.4890 37 1 2.9444 1.2156 3.3307 38 1 3.0945 3.4847 1.2718 39 1 4.3574 2.7563 0.2506 40 1 4.7804 1.9281 2.9178 41 1 7.1754 2.9637 3.5912 42 1 5.9121 3.6932 4.6111 43 1 5.7838 6.0973 4.9030 44 1 7.0101 8.2309 4.9070 45 1 11.1294 11.8415 4.0461 46 1 10.0403 6.4834 2.4471 47 1 8.8113 4.3512 2.4573 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294131333.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:33 Heat of formation + Delta-G solvation = -58.952825 kcal Electronic energy + Delta-G solvation = -25367.985053 eV Core-core repulsion = 21708.508946 eV Total energy + Delta-G solvation = -3659.476106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.15232 -40.51585 -39.14260 -38.10343 -35.42222 -34.39371 -33.37619 -32.58365 -31.76797 -28.69229 -28.15888 -27.81950 -27.29461 -26.11583 -23.62911 -22.59568 -21.28484 -21.01466 -19.84285 -19.59570 -18.84322 -17.97218 -17.11218 -16.71512 -16.37184 -16.17873 -16.06883 -15.70824 -15.53560 -15.35377 -15.22387 -14.89011 -14.61248 -14.37038 -14.30510 -14.13526 -13.93491 -13.60142 -13.28080 -12.96732 -12.81019 -12.65020 -12.51083 -12.46246 -12.29514 -12.26024 -12.23539 -12.11387 -11.86510 -11.61873 -11.38239 -11.17742 -10.90748 -10.72853 -10.12089 -10.00883 -9.75589 -8.89111 -8.47103 -6.15289 0.62167 0.68357 1.33824 1.43531 1.46264 1.51852 1.77589 2.17861 2.32694 2.86225 3.19190 3.52498 3.66127 3.83664 3.88490 3.94575 4.06525 4.17911 4.23173 4.30774 4.38325 4.44764 4.50175 4.60641 4.62524 4.72975 4.78388 4.81624 4.87781 4.89325 4.95094 5.06130 5.08283 5.10198 5.15196 5.19016 5.22765 5.31520 5.41914 5.47975 5.54631 5.57465 5.72252 5.79064 5.82299 5.95782 6.03185 6.24184 6.66868 6.97292 7.40593 7.78923 8.76387 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.030109 B = 0.002002 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.732510 B =13981.320187 C =14344.532574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.085 4.085 4 C -0.060 4.060 5 C -0.144 4.144 6 C -0.140 4.140 7 C 0.129 3.871 8 N -0.715 5.715 9 C 0.508 3.492 10 O -0.584 6.584 11 C -0.078 4.078 12 C -0.145 4.145 13 C -0.061 4.061 14 C -0.245 4.245 15 C 0.111 3.889 16 O -0.234 6.234 17 C -0.414 4.414 18 H 0.100 0.900 19 C -0.025 4.025 20 N -0.921 5.921 21 Si 1.021 2.979 22 H -0.260 1.260 23 H -0.270 1.270 24 H -0.255 1.255 25 C -0.207 4.207 26 C -0.058 4.058 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.120 0.880 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.415 0.585 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.138 0.862 44 H 0.117 0.883 45 H 0.273 0.727 46 H 0.112 0.888 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.816 -27.131 -1.635 33.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.166 4.166 3 C -0.123 4.123 4 C -0.061 4.061 5 C -0.201 4.201 6 C -0.197 4.197 7 C 0.005 3.995 8 N -0.369 5.369 9 C 0.296 3.704 10 O -0.463 6.463 11 C -0.117 4.117 12 C -0.146 4.146 13 C -0.079 4.079 14 C -0.264 4.264 15 C 0.061 3.939 16 O -0.141 6.141 17 C -0.491 4.491 18 H 0.117 0.883 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.839 3.161 22 H -0.185 1.185 23 H -0.195 1.195 24 H -0.179 1.179 25 C -0.226 4.226 26 C -0.076 4.076 27 H 0.110 0.890 28 H 0.123 0.877 29 H 0.137 0.863 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.254 0.746 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.156 0.844 44 H 0.135 0.865 45 H 0.082 0.918 46 H 0.130 0.870 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.517 -26.250 -2.324 32.208 hybrid contribution 0.085 0.980 0.279 1.022 sum -18.431 -25.271 -2.045 31.345 Atomic orbital electron populations 1.23982 0.96151 1.02188 1.01499 1.22931 0.95880 0.98319 0.99476 1.20766 0.97689 0.96102 0.97748 1.20661 0.95279 0.93600 0.96517 1.21939 0.98420 0.97463 1.02250 1.21887 0.99910 1.02240 0.95698 1.21347 0.91438 0.97678 0.89016 1.45905 1.40340 1.19675 1.30986 1.21192 0.81024 0.81748 0.86424 1.90755 1.69189 1.37371 1.48957 1.20536 0.97523 0.96007 0.97673 1.19273 0.96604 0.96129 1.02574 1.20939 0.98272 0.91303 0.97405 1.21230 0.97495 1.00217 1.07456 1.19944 0.92085 0.86900 0.94954 1.83935 1.50449 1.18905 1.60820 1.21823 1.07808 0.93397 1.26030 0.88279 1.26626 0.95768 1.00518 0.99273 1.70189 1.15734 1.27348 1.42690 0.84568 0.78840 0.75384 0.77265 1.18516 1.19498 1.17860 1.20447 1.02989 0.92653 1.06550 1.20885 0.94238 0.95859 0.96626 0.88958 0.87692 0.86254 0.91786 0.90848 0.91675 0.90920 0.92840 0.93359 0.91341 0.91685 0.93302 0.92976 0.74641 0.85074 0.85378 0.84423 0.86526 0.91840 0.87011 0.83534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.88 14.32 67.77 0.97 -0.91 16 2 C -0.15 -1.36 7.65 25.64 0.20 -1.16 16 3 C -0.09 -0.92 4.73 29.85 0.14 -0.78 16 4 C -0.06 -0.62 0.55 -52.18 -0.03 -0.65 16 5 C -0.14 -1.13 8.04 71.98 0.58 -0.55 16 6 C -0.14 -1.26 8.05 71.98 0.58 -0.68 16 7 C 0.13 2.16 4.56 86.38 0.39 2.56 16 8 N -0.71 -11.24 4.96 -463.05 -2.30 -13.54 16 9 C 0.51 12.37 7.82 87.66 0.69 13.05 16 10 O -0.58 -21.50 16.03 -3.05 -0.05 -21.55 16 11 C -0.08 -1.56 5.83 29.10 0.17 -1.39 16 12 C -0.14 -4.70 4.38 -19.84 -0.09 -4.79 16 13 C -0.06 -2.27 9.69 22.25 0.22 -2.05 16 14 C -0.24 -11.48 9.17 22.39 0.21 -11.28 16 15 C 0.11 5.94 6.65 22.58 0.15 6.09 16 16 O -0.23 -14.87 9.76 -22.72 -0.22 -15.10 16 17 C -0.41 -25.26 9.49 67.92 0.64 -24.62 16 18 H 0.10 5.58 5.20 -2.91 -0.02 5.56 16 19 C -0.02 -1.46 5.49 84.84 0.47 -0.99 16 20 N -0.92 -58.32 13.67 21.62 0.30 -58.03 16 21 Si 1.02 44.37 29.55 68.60 2.03 46.39 16 22 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 24 H -0.25 -10.37 7.11 99.48 0.71 -9.67 16 25 C -0.21 -9.51 9.99 22.39 0.22 -9.29 16 26 C -0.06 -2.09 9.69 22.25 0.22 -1.87 16 27 H 0.09 0.90 7.84 -2.91 -0.02 0.88 16 28 H 0.10 0.77 8.06 -2.91 -0.02 0.74 16 29 H 0.12 0.85 6.80 -2.91 -0.02 0.83 16 30 H 0.06 0.77 7.79 -2.39 -0.02 0.76 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.40 6.86 -2.39 -0.02 0.39 16 33 H 0.07 0.43 6.53 -2.39 -0.02 0.41 16 34 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 0.54 7.22 -2.38 -0.02 0.52 16 37 H 0.06 0.46 6.86 -2.39 -0.02 0.44 16 38 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.42 3.56 6.16 -92.70 -0.57 2.99 16 41 H 0.13 1.72 8.08 -2.39 -0.02 1.70 16 42 H 0.13 1.75 8.08 -2.39 -0.02 1.73 16 43 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 44 H 0.12 5.55 5.64 -2.91 -0.02 5.53 16 45 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 46 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 47 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -82.66 385.73 5.87 -76.79 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.39 Total: 24.33 kcal Atomic # 6 Polarization: -45.03 SS G_CDS: 5.72 Total: -39.31 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -2.00 Total: -71.56 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.27 Total: -36.65 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -82.66 5.87 -76.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294131333.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.838 kcal (2) G-P(sol) polarization free energy of solvation -82.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds