Wall clock time and date at job start Tue Mar 31 2020 12:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46702 * 2 1 4 4 C 1.52994 * 109.46147 * 299.96905 * 3 2 1 5 5 C 1.53041 * 109.45942 * 179.97438 * 3 2 1 6 6 C 1.53193 * 109.31419 * 178.61434 * 5 3 2 7 7 N 1.46927 * 108.77269 * 54.63576 * 6 5 3 8 8 C 1.34776 * 120.62914 * 126.37459 * 7 6 5 9 9 O 1.21598 * 119.99986 * 354.04847 * 8 7 6 10 10 C 1.47533 * 119.99954 * 174.05455 * 8 7 6 11 11 C 1.39659 * 120.19734 * 312.28624 * 10 8 7 12 12 C 1.37834 * 119.92183 * 179.72881 * 11 10 8 13 13 C 1.38574 * 120.31894 * 359.97438 * 12 11 10 14 14 C 1.38024 * 120.40433 * 0.02562 * 13 12 11 15 15 C 1.38831 * 120.07208 * 359.95213 * 14 13 12 16 16 O 1.35523 * 120.16131 * 180.02562 * 15 14 13 17 17 C 1.34815 * 116.99967 * 6.36386 * 16 15 14 18 18 H 1.08000 * 119.99660 * 5.70581 * 17 16 15 19 19 C 1.38693 * 119.99960 * 185.69226 * 17 16 15 20 20 N 1.31519 * 120.00410 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99913 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47238 * 90.00153 * 21 19 17 23 23 H 1.48502 * 109.47091 * 210.00821 * 21 19 17 24 24 H 1.48504 * 109.47184 * 330.00293 * 21 19 17 25 25 C 1.46922 * 118.74148 * 306.64319 * 7 6 5 26 26 C 1.52759 * 109.00685 * 53.30734 * 25 7 6 27 27 H 1.08997 * 109.47519 * 299.99719 * 1 2 3 28 28 H 1.08998 * 109.47229 * 60.00394 * 1 2 3 29 29 H 1.09010 * 109.46749 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47519 * 240.00281 * 2 1 3 31 31 H 1.08998 * 109.47229 * 119.99606 * 2 1 3 32 32 H 1.09003 * 109.47174 * 300.03315 * 4 3 2 33 33 H 1.09000 * 109.47001 * 60.02567 * 4 3 2 34 34 H 1.09001 * 109.47249 * 180.02562 * 4 3 2 35 35 H 1.09003 * 109.49304 * 58.66480 * 5 3 2 36 36 H 1.09000 * 109.52564 * 298.58626 * 5 3 2 37 37 H 1.09000 * 109.58586 * 294.85015 * 6 5 3 38 38 H 1.09000 * 109.58535 * 174.42250 * 6 5 3 39 39 H 1.08002 * 120.04256 * 359.74724 * 11 10 8 40 40 H 1.08000 * 119.83650 * 179.97438 * 12 11 10 41 41 H 1.07999 * 119.79692 * 180.02562 * 13 12 11 42 42 H 1.07999 * 119.96652 * 179.97438 * 14 13 12 43 43 H 0.96994 * 120.00510 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.59256 * 173.14659 * 25 7 6 45 45 H 1.09008 * 109.58474 * 293.57384 * 25 7 6 46 46 H 1.09005 * 109.56380 * 185.55030 * 26 25 7 47 47 H 1.09006 * 109.38510 * 65.51837 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5304 2.1633 -1.2497 5 6 3.5703 1.4424 0.0006 6 6 4.0772 2.8876 -0.0343 7 7 3.4734 3.6276 1.0822 8 6 4.2460 4.3022 1.9565 9 8 5.4571 4.2149 1.8909 10 6 3.6224 5.1467 2.9931 11 6 2.6098 6.0457 2.6513 12 6 2.0272 6.8279 3.6253 13 6 2.4409 6.7266 4.9440 14 6 3.4404 5.8426 5.2966 15 6 4.0383 5.0465 4.3290 16 8 5.0196 4.1775 4.6733 17 6 5.2792 4.0373 5.9888 18 1 4.6556 4.5331 6.7180 19 6 6.3468 3.2563 6.4056 20 7 7.1063 2.6528 5.5176 21 14 6.7061 3.0616 8.2283 22 1 5.9637 1.8891 8.7567 23 1 8.1633 2.8552 8.4264 24 1 6.2769 4.2859 8.9510 25 6 2.0118 3.6132 1.2310 26 6 1.5278 2.1644 1.2485 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8938 1.6489 -2.1393 33 1 0.4404 2.1635 -1.2499 34 1 1.8939 3.1909 -1.2501 35 1 3.9344 0.9078 -0.8768 36 1 3.9342 0.9509 0.9030 37 1 3.7913 3.3524 -0.9779 38 1 5.1626 2.8966 0.0658 39 1 2.2833 6.1278 1.6251 40 1 1.2445 7.5229 3.3594 41 1 1.9783 7.3432 5.7004 42 1 3.7576 5.7697 6.3264 43 1 7.8532 2.1069 5.8090 44 1 1.7348 4.1009 2.1656 45 1 1.5540 4.1384 0.3926 46 1 0.4380 2.1438 1.2593 47 1 1.9099 1.6660 2.1394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299730296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:42 Heat of formation + Delta-G solvation = -44.617378 kcal Electronic energy + Delta-G solvation = -27750.711318 eV Core-core repulsion = 24091.856843 eV Total energy + Delta-G solvation = -3658.854475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -40.30898 -39.05969 -37.61399 -36.36413 -34.54868 -32.35139 -31.74324 -30.36666 -30.03942 -28.95960 -27.57107 -25.53868 -25.24807 -23.25337 -23.07905 -21.63619 -21.27982 -19.55914 -18.10626 -18.01518 -16.95692 -16.37011 -15.55280 -15.18463 -14.99185 -14.68028 -14.66501 -14.39127 -14.15733 -14.09154 -13.68919 -13.55710 -13.41789 -12.90639 -12.70557 -12.53209 -12.27634 -12.03418 -11.98793 -11.74504 -11.71983 -11.56458 -11.33058 -11.17784 -11.00053 -10.92099 -10.86432 -10.76583 -10.48098 -10.43101 -10.19165 -10.09580 -9.61408 -8.95453 -8.88380 -8.21834 -8.09885 -7.32530 -6.46010 -4.06720 1.81525 2.29868 3.11097 3.12217 3.17107 3.42940 3.64790 3.92888 4.50809 4.64732 4.73658 4.74867 5.05987 5.11537 5.13531 5.20666 5.28127 5.33597 5.41730 5.45138 5.52707 5.54235 5.57784 5.66327 5.72975 5.78034 5.81810 5.88231 5.93933 5.96573 6.00418 6.04763 6.12274 6.16933 6.17639 6.24321 6.29376 6.38324 6.55298 6.57283 6.66875 6.93973 7.03369 7.07196 7.25582 7.28616 7.68478 7.90746 8.01173 8.94704 8.98989 9.64965 10.69204 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012747 B = 0.004337 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.057848 B = 6454.938799 C = 7438.061359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.059 4.059 4 C -0.146 4.146 5 C -0.124 4.124 6 C 0.115 3.885 7 N -0.616 5.616 8 C 0.574 3.426 9 O -0.518 6.518 10 C -0.217 4.217 11 C -0.042 4.042 12 C -0.226 4.226 13 C -0.055 4.055 14 C -0.235 4.235 15 C 0.188 3.812 16 O -0.146 6.146 17 C -0.401 4.401 18 H 0.094 0.906 19 C 0.044 3.956 20 N -0.842 5.842 21 Si 0.941 3.059 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.266 1.266 25 C 0.107 3.893 26 C -0.127 4.127 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.131 0.869 43 H 0.272 0.728 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.757 -1.123 -9.831 16.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.059 4.059 4 C -0.203 4.203 5 C -0.162 4.162 6 C -0.008 4.008 7 N -0.352 5.352 8 C 0.364 3.636 9 O -0.392 6.392 10 C -0.221 4.221 11 C -0.061 4.061 12 C -0.245 4.245 13 C -0.074 4.074 14 C -0.254 4.254 15 C 0.130 3.870 16 O -0.046 6.046 17 C -0.476 4.476 18 H 0.111 0.889 19 C -0.163 4.163 20 N -0.474 5.474 21 Si 0.765 3.235 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.191 1.191 25 C -0.016 4.016 26 C -0.165 4.165 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.149 0.851 43 H 0.082 0.918 44 H 0.112 0.888 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.669 -1.495 -9.993 16.205 hybrid contribution 0.085 -0.093 1.000 1.007 sum -12.584 -1.588 -8.994 15.549 Atomic orbital electron populations 1.21886 0.96083 1.01224 1.02018 1.21562 0.95773 0.95871 1.01854 1.20518 0.95077 0.95002 0.95337 1.22019 1.00863 1.00648 0.96788 1.21969 0.94664 0.97002 1.02572 1.21477 0.99869 0.90910 0.88547 1.47929 1.06526 1.51824 1.28878 1.18229 0.86339 0.78928 0.80082 1.90801 1.13923 1.63525 1.70968 1.18745 1.04939 1.06558 0.91898 1.20747 0.92923 0.93990 0.98398 1.20477 1.05385 1.05272 0.93325 1.20885 0.94863 0.95857 0.95749 1.21143 1.02201 1.01681 1.00369 1.19220 0.88167 0.88213 0.91418 1.84061 1.43437 1.49842 1.27242 1.21409 1.14624 1.32173 0.79443 0.88895 1.25362 0.94802 0.95794 1.00344 1.70088 1.15918 1.27528 1.33902 0.85720 0.78240 0.79142 0.80367 1.19789 1.20132 1.19058 1.21747 0.80396 0.96794 1.02681 1.21980 1.00532 0.95950 0.98036 0.92334 0.92558 0.93226 0.92205 0.91979 0.92920 0.92489 0.92158 0.91260 0.91228 0.92111 0.89175 0.86729 0.87199 0.87183 0.85090 0.91842 0.88835 0.92056 0.90781 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.21 37.16 0.34 -0.99 16 2 C -0.11 -1.12 4.99 -26.73 -0.13 -1.26 16 3 C -0.06 -0.65 0.54 -154.47 -0.08 -0.74 16 4 C -0.15 -1.37 7.36 37.15 0.27 -1.10 16 5 C -0.12 -1.62 4.91 -26.61 -0.13 -1.75 16 6 C 0.11 1.75 5.98 -3.71 -0.02 1.72 16 7 N -0.62 -10.71 2.98 -174.26 -0.52 -11.23 16 8 C 0.57 12.98 6.96 -12.47 -0.09 12.89 16 9 O -0.52 -14.17 15.91 -5.00 -0.08 -14.25 16 10 C -0.22 -4.75 4.85 -104.81 -0.51 -5.26 16 11 C -0.04 -0.73 7.54 -39.20 -0.30 -1.03 16 12 C -0.23 -3.68 10.03 -39.61 -0.40 -4.08 16 13 C -0.06 -0.97 10.03 -39.54 -0.40 -1.36 16 14 C -0.23 -5.04 9.12 -39.44 -0.36 -5.40 16 15 C 0.19 4.66 6.63 -38.60 -0.26 4.41 16 16 O -0.15 -4.31 8.77 -9.49 -0.08 -4.39 16 17 C -0.40 -11.34 9.43 30.90 0.29 -11.05 16 18 H 0.09 2.39 5.32 -52.49 -0.28 2.11 16 19 C 0.04 1.22 5.49 -17.52 -0.10 1.13 16 20 N -0.84 -25.45 13.67 55.48 0.76 -24.69 16 21 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 C 0.11 1.47 4.73 -3.94 -0.02 1.45 16 26 C -0.13 -1.56 4.57 -26.84 -0.12 -1.68 16 27 H 0.06 0.51 6.40 -51.93 -0.33 0.18 16 28 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 29 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 34 H 0.06 0.60 4.99 -51.93 -0.26 0.34 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.78 6.69 -51.93 -0.35 0.43 16 38 H 0.09 1.61 7.00 -51.93 -0.36 1.25 16 39 H 0.11 1.68 7.31 -52.49 -0.38 1.29 16 40 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.13 2.79 5.73 -52.49 -0.30 2.49 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.09 1.40 5.15 -51.93 -0.27 1.13 16 45 H 0.06 0.70 6.70 -51.92 -0.35 0.36 16 46 H 0.07 0.76 6.36 -51.93 -0.33 0.43 16 47 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 360.48 15.07 5.43 5.43 Total: -1.00 -33.80 360.48 -8.33 -42.13 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.82 Total: 5.53 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -2.00 Total: -14.09 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.24 Total: -35.92 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.16 Total: -18.64 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.80 -8.33 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299730296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.488 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds