Wall clock time and date at job start Tue Mar 31 2020 12:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46702 * 2 1 4 4 C 1.52994 * 109.46147 * 299.96905 * 3 2 1 5 5 C 1.53041 * 109.45942 * 179.97438 * 3 2 1 6 6 C 1.53193 * 109.31419 * 178.61434 * 5 3 2 7 7 N 1.46927 * 108.77269 * 54.63576 * 6 5 3 8 8 C 1.34776 * 120.62914 * 126.37459 * 7 6 5 9 9 O 1.21598 * 119.99986 * 354.04847 * 8 7 6 10 10 C 1.47533 * 119.99954 * 174.05455 * 8 7 6 11 11 C 1.39659 * 120.19734 * 312.28624 * 10 8 7 12 12 C 1.37834 * 119.92183 * 179.72881 * 11 10 8 13 13 C 1.38574 * 120.31894 * 359.97438 * 12 11 10 14 14 C 1.38024 * 120.40433 * 0.02562 * 13 12 11 15 15 C 1.38831 * 120.07208 * 359.95213 * 14 13 12 16 16 O 1.35523 * 120.16131 * 180.02562 * 15 14 13 17 17 C 1.34815 * 116.99967 * 6.36386 * 16 15 14 18 18 H 1.08000 * 119.99660 * 5.70581 * 17 16 15 19 19 C 1.38693 * 119.99960 * 185.69226 * 17 16 15 20 20 N 1.31519 * 120.00410 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99913 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47238 * 90.00153 * 21 19 17 23 23 H 1.48502 * 109.47091 * 210.00821 * 21 19 17 24 24 H 1.48504 * 109.47184 * 330.00293 * 21 19 17 25 25 C 1.46922 * 118.74148 * 306.64319 * 7 6 5 26 26 C 1.52759 * 109.00685 * 53.30734 * 25 7 6 27 27 H 1.08997 * 109.47519 * 299.99719 * 1 2 3 28 28 H 1.08998 * 109.47229 * 60.00394 * 1 2 3 29 29 H 1.09010 * 109.46749 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47519 * 240.00281 * 2 1 3 31 31 H 1.08998 * 109.47229 * 119.99606 * 2 1 3 32 32 H 1.09003 * 109.47174 * 300.03315 * 4 3 2 33 33 H 1.09000 * 109.47001 * 60.02567 * 4 3 2 34 34 H 1.09001 * 109.47249 * 180.02562 * 4 3 2 35 35 H 1.09003 * 109.49304 * 58.66480 * 5 3 2 36 36 H 1.09000 * 109.52564 * 298.58626 * 5 3 2 37 37 H 1.09000 * 109.58586 * 294.85015 * 6 5 3 38 38 H 1.09000 * 109.58535 * 174.42250 * 6 5 3 39 39 H 1.08002 * 120.04256 * 359.74724 * 11 10 8 40 40 H 1.08000 * 119.83650 * 179.97438 * 12 11 10 41 41 H 1.07999 * 119.79692 * 180.02562 * 13 12 11 42 42 H 1.07999 * 119.96652 * 179.97438 * 14 13 12 43 43 H 0.96994 * 120.00510 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.59256 * 173.14659 * 25 7 6 45 45 H 1.09008 * 109.58474 * 293.57384 * 25 7 6 46 46 H 1.09005 * 109.56380 * 185.55030 * 26 25 7 47 47 H 1.09006 * 109.38510 * 65.51837 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5304 2.1633 -1.2497 5 6 3.5703 1.4424 0.0006 6 6 4.0772 2.8876 -0.0343 7 7 3.4734 3.6276 1.0822 8 6 4.2460 4.3022 1.9565 9 8 5.4571 4.2149 1.8909 10 6 3.6224 5.1467 2.9931 11 6 2.6098 6.0457 2.6513 12 6 2.0272 6.8279 3.6253 13 6 2.4409 6.7266 4.9440 14 6 3.4404 5.8426 5.2966 15 6 4.0383 5.0465 4.3290 16 8 5.0196 4.1775 4.6733 17 6 5.2792 4.0373 5.9888 18 1 4.6556 4.5331 6.7180 19 6 6.3468 3.2563 6.4056 20 7 7.1063 2.6528 5.5176 21 14 6.7061 3.0616 8.2283 22 1 5.9637 1.8891 8.7567 23 1 8.1633 2.8552 8.4264 24 1 6.2769 4.2859 8.9510 25 6 2.0118 3.6132 1.2310 26 6 1.5278 2.1644 1.2485 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8938 1.6489 -2.1393 33 1 0.4404 2.1635 -1.2499 34 1 1.8939 3.1909 -1.2501 35 1 3.9344 0.9078 -0.8768 36 1 3.9342 0.9509 0.9030 37 1 3.7913 3.3524 -0.9779 38 1 5.1626 2.8966 0.0658 39 1 2.2833 6.1278 1.6251 40 1 1.2445 7.5229 3.3594 41 1 1.9783 7.3432 5.7004 42 1 3.7576 5.7697 6.3264 43 1 7.8532 2.1069 5.8090 44 1 1.7348 4.1009 2.1656 45 1 1.5540 4.1384 0.3926 46 1 0.4380 2.1438 1.2593 47 1 1.9099 1.6660 2.1394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299730296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:41 Heat of formation + Delta-G solvation = -65.999484 kcal Electronic energy + Delta-G solvation = -27751.638516 eV Core-core repulsion = 24091.856843 eV Total energy + Delta-G solvation = -3659.781672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.74353 -40.57080 -39.18960 -38.07621 -35.89012 -34.36250 -33.03864 -31.56348 -31.28509 -30.61393 -28.48144 -27.44231 -26.47281 -24.48476 -24.39143 -23.21354 -22.56053 -20.95855 -19.91291 -19.39947 -18.46629 -17.95439 -17.11718 -16.63139 -16.40525 -15.97809 -15.91547 -15.75066 -15.54071 -15.43351 -15.29880 -15.01012 -14.67637 -14.41235 -14.29008 -13.87073 -13.59652 -13.45616 -13.09615 -12.92598 -12.85192 -12.73137 -12.71029 -12.50444 -12.44224 -12.30536 -12.17371 -12.13899 -11.76930 -11.47628 -11.37670 -11.20700 -11.11056 -10.86110 -10.68882 -9.78611 -9.52255 -9.05839 -8.49072 -6.20334 0.22414 0.69885 1.30160 1.41691 1.49613 1.79904 2.13263 2.16039 2.80929 3.14134 3.41004 3.61771 3.70884 3.77949 3.90936 4.10322 4.13173 4.23401 4.28338 4.29860 4.41409 4.48695 4.54765 4.59742 4.65829 4.68211 4.73870 4.75287 4.83231 4.91132 4.95086 5.03508 5.05345 5.06387 5.13325 5.18335 5.23223 5.23369 5.29673 5.34491 5.49270 5.52416 5.58056 5.67980 5.68929 5.72761 5.93495 6.15861 6.45594 6.91789 7.31067 7.75266 8.72944 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012747 B = 0.004337 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.057848 B = 6454.938799 C = 7438.061359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.054 4.054 4 C -0.141 4.141 5 C -0.120 4.120 6 C 0.110 3.890 7 N -0.606 5.606 8 C 0.561 3.439 9 O -0.587 6.587 10 C -0.231 4.231 11 C -0.034 4.034 12 C -0.191 4.191 13 C -0.045 4.045 14 C -0.251 4.251 15 C 0.145 3.855 16 O -0.212 6.212 17 C -0.421 4.421 18 H 0.107 0.893 19 C -0.024 4.024 20 N -0.915 5.915 21 Si 1.023 2.977 22 H -0.261 1.261 23 H -0.273 1.273 24 H -0.247 1.247 25 C 0.101 3.899 26 C -0.124 4.124 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.028 0.972 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.154 0.846 40 H 0.166 0.834 41 H 0.155 0.845 42 H 0.123 0.877 43 H 0.271 0.729 44 H 0.083 0.917 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.756 1.029 -11.106 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.054 4.054 4 C -0.198 4.198 5 C -0.158 4.158 6 C -0.012 4.012 7 N -0.339 5.339 8 C 0.352 3.648 9 O -0.467 6.467 10 C -0.236 4.236 11 C -0.052 4.052 12 C -0.210 4.210 13 C -0.063 4.063 14 C -0.270 4.270 15 C 0.091 3.909 16 O -0.117 6.117 17 C -0.497 4.497 18 H 0.125 0.875 19 C -0.222 4.222 20 N -0.552 5.552 21 Si 0.841 3.159 22 H -0.185 1.185 23 H -0.198 1.198 24 H -0.170 1.170 25 C -0.020 4.020 26 C -0.162 4.162 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.047 0.953 37 H 0.117 0.883 38 H 0.069 0.931 39 H 0.171 0.829 40 H 0.184 0.816 41 H 0.173 0.827 42 H 0.141 0.859 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -17.789 0.686 -11.306 21.089 hybrid contribution 1.305 -0.560 1.157 1.832 sum -16.485 0.126 -10.149 19.359 Atomic orbital electron populations 1.21863 0.94380 1.01938 1.02634 1.21541 0.97191 0.94842 1.01394 1.20497 0.92840 0.96082 0.95972 1.21987 1.02103 1.00131 0.95576 1.21955 0.96937 0.95249 1.01672 1.21661 0.97836 0.92483 0.89190 1.48027 1.08058 1.49978 1.27841 1.18634 0.85891 0.79482 0.80808 1.90758 1.16881 1.66126 1.72956 1.19141 1.06083 1.07621 0.90748 1.21213 0.90985 0.92127 1.00874 1.21174 1.04313 1.03465 0.91998 1.21411 0.92808 0.94291 0.97785 1.21287 1.03624 1.02607 0.99461 1.19964 0.88185 0.89096 0.93639 1.84047 1.46654 1.53286 1.27681 1.21959 1.15177 1.32580 0.79995 0.87528 1.26765 0.94254 0.95141 1.06063 1.70284 1.17633 1.30391 1.36873 0.84547 0.78061 0.79990 0.73293 1.18546 1.19821 1.16980 1.22077 0.77820 0.98257 1.03857 1.21984 1.02246 0.94725 0.97246 0.92579 0.90889 0.92653 0.91129 0.94142 0.91727 0.90466 0.92296 0.88940 0.95265 0.88312 0.93065 0.82864 0.81635 0.82723 0.85945 0.91995 0.89844 0.87805 0.87612 0.95061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.21 71.98 0.66 -1.46 16 2 C -0.11 -2.05 4.99 30.60 0.15 -1.90 16 3 C -0.05 -1.09 0.54 -52.16 -0.03 -1.12 16 4 C -0.14 -2.01 7.36 71.98 0.53 -1.48 16 5 C -0.12 -3.23 4.91 30.67 0.15 -3.08 16 6 C 0.11 3.46 5.98 86.36 0.52 3.98 16 7 N -0.61 -21.50 2.98 -823.49 -2.45 -23.95 16 8 C 0.56 26.94 6.96 86.69 0.60 27.54 16 9 O -0.59 -35.39 15.91 5.80 0.09 -35.29 16 10 C -0.23 -10.37 4.85 -19.99 -0.10 -10.47 16 11 C -0.03 -1.06 7.54 22.52 0.17 -0.89 16 12 C -0.19 -5.14 10.03 22.25 0.22 -4.91 16 13 C -0.04 -1.40 10.03 22.30 0.22 -1.18 16 14 C -0.25 -10.80 9.12 22.36 0.20 -10.60 16 15 C 0.14 7.57 6.63 22.91 0.15 7.72 16 16 O -0.21 -13.74 8.77 -10.28 -0.09 -13.83 16 17 C -0.42 -25.74 9.43 67.93 0.64 -25.10 16 18 H 0.11 5.83 5.32 -2.91 -0.02 5.82 16 19 C -0.02 -1.44 5.49 84.85 0.47 -0.98 16 20 N -0.92 -60.64 13.67 21.62 0.30 -60.35 16 21 Si 1.02 44.68 29.55 68.60 2.03 46.71 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 25 C 0.10 2.57 4.73 86.22 0.41 2.98 16 26 C -0.12 -2.89 4.57 30.53 0.14 -2.75 16 27 H 0.06 0.81 6.40 -2.39 -0.02 0.80 16 28 H 0.07 0.81 6.43 -2.39 -0.02 0.79 16 29 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.84 6.43 -2.39 -0.02 0.83 16 34 H 0.06 0.87 4.99 -2.39 -0.01 0.86 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 2.36 6.69 -2.39 -0.02 2.35 16 38 H 0.05 2.01 7.00 -2.39 -0.02 2.00 16 39 H 0.15 3.65 7.31 -2.91 -0.02 3.63 16 40 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 41 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 42 H 0.12 5.37 5.73 -2.91 -0.02 5.35 16 43 H 0.27 16.46 8.31 -92.71 -0.77 15.69 16 44 H 0.08 2.31 5.15 -2.39 -0.01 2.30 16 45 H 0.10 1.85 6.70 -2.38 -0.02 1.83 16 46 H 0.11 1.82 6.36 -2.38 -0.02 1.80 16 47 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -88.56 360.48 5.97 -82.59 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.98 Total: 27.82 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 5.12 Total: -23.70 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -2.16 Total: -84.30 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: 0.00 Total: -49.12 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -88.56 5.97 -82.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299730296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.590 kcal (2) G-P(sol) polarization free energy of solvation -88.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds