Wall clock time and date at job start Tue Mar 31 2020 13:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47219 * 2 1 4 4 C 1.53003 * 109.47043 * 119.99879 * 2 1 3 5 5 C 1.52999 * 109.47105 * 175.00418 * 4 2 1 6 6 C 1.53003 * 109.47215 * 185.28127 * 5 4 2 7 7 H 1.08999 * 109.58589 * 65.72591 * 6 5 4 8 8 C 1.53196 * 109.58375 * 305.44701 * 6 5 4 9 9 C 1.53039 * 109.30959 * 185.43870 * 8 6 5 10 10 C 1.53037 * 109.54218 * 61.36399 * 9 8 6 11 11 C 1.53191 * 109.30966 * 298.63218 * 10 9 8 12 12 N 1.46921 * 109.70238 * 186.08633 * 6 5 4 13 13 S 1.65598 * 120.63350 * 353.46358 * 12 6 5 14 14 O 1.42108 * 104.27463 * 195.90065 * 13 12 6 15 15 O 1.42102 * 104.27457 * 323.75273 * 13 12 6 16 16 C 1.81392 * 104.45056 * 79.82656 * 13 12 6 17 17 C 1.52998 * 109.47172 * 180.02562 * 16 13 12 18 18 C 1.50696 * 109.47455 * 179.97438 * 17 16 13 19 19 H 1.08004 * 120.00022 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00325 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00248 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00035 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47018 * 60.00042 * 22 20 18 24 24 H 1.48501 * 109.46860 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47129 * 300.00035 * 22 20 18 26 26 H 1.08997 * 109.47722 * 300.00240 * 1 2 3 27 27 H 1.09008 * 109.47228 * 60.00334 * 1 2 3 28 28 H 1.09004 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47257 * 240.00020 * 2 1 3 30 30 H 1.09001 * 109.47627 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46928 * 299.99699 * 3 2 1 32 32 H 1.09000 * 109.47499 * 59.99829 * 3 2 1 33 33 H 1.08993 * 109.47140 * 55.00282 * 4 2 1 34 34 H 1.09005 * 109.46969 * 294.99787 * 4 2 1 35 35 H 1.08993 * 109.47471 * 65.27662 * 5 4 2 36 36 H 1.09005 * 109.46852 * 305.27793 * 5 4 2 37 37 H 1.09000 * 109.49581 * 305.38686 * 8 6 5 38 38 H 1.08997 * 109.49577 * 65.44993 * 8 6 5 39 39 H 1.09003 * 109.45409 * 181.38827 * 9 8 6 40 40 H 1.09003 * 109.46041 * 301.33527 * 9 8 6 41 41 H 1.09001 * 109.49688 * 58.58298 * 10 9 8 42 42 H 1.08995 * 109.49551 * 178.68308 * 10 9 8 43 43 H 1.09001 * 109.58496 * 174.42657 * 11 10 9 44 44 H 1.09001 * 109.58646 * 294.84943 * 11 10 9 45 45 H 1.09002 * 109.47292 * 299.99862 * 16 13 12 46 46 H 1.09000 * 109.47604 * 59.99995 * 16 13 12 47 47 H 1.09002 * 109.47276 * 299.99722 * 17 16 13 48 48 H 1.09006 * 109.47213 * 60.00158 * 17 16 13 49 49 H 0.96999 * 120.00288 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.8309 1.1881 6 6 4.0639 -1.6658 2.3692 7 1 3.7088 -2.6913 2.2677 8 6 3.5393 -1.0680 3.6785 9 6 4.1505 -1.8239 4.8606 10 6 5.6729 -1.6695 4.8348 11 6 6.2215 -2.2742 3.5386 12 7 5.5327 -1.6536 2.3987 13 16 6.3956 -0.9538 1.1707 14 8 7.7149 -1.4541 1.3401 15 8 5.6443 -1.2500 0.0015 16 6 6.3373 0.8228 1.5318 17 6 7.1085 1.5878 0.4543 18 6 7.0596 3.0639 0.7538 19 1 6.5309 3.4208 1.6254 20 6 7.6888 3.9589 -0.0852 21 7 8.3314 3.5245 -1.1473 22 14 7.6275 5.7887 0.2858 23 1 8.2442 6.0458 1.6120 24 1 8.3752 6.5312 -0.7606 25 1 6.2140 6.2437 0.3006 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6054 -1.7197 1.2952 34 1 1.7516 -0.1582 2.1370 35 1 4.0030 0.1658 1.2367 36 1 3.8572 -1.3113 0.2543 37 1 3.8187 -0.0160 3.7358 38 1 2.4536 -1.1583 3.7104 39 1 3.7599 -1.4165 5.7931 40 1 3.8913 -2.8802 4.7893 41 1 5.9322 -0.6118 4.8812 42 1 6.1056 -2.1885 5.6900 43 1 7.2917 -2.0795 3.4690 44 1 6.0424 -3.3493 3.5325 45 1 5.3000 1.1576 1.5423 46 1 6.7897 1.0109 2.5055 47 1 8.1459 1.2532 0.4433 48 1 6.6557 1.3999 -0.5193 49 1 8.7744 4.1541 -1.7374 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330954565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:52 Heat of formation + Delta-G solvation = -102.896149 kcal Electronic energy + Delta-G solvation = -26934.439461 eV Core-core repulsion = 23408.501781 eV Total energy + Delta-G solvation = -3525.937681 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.14125 -37.02836 -36.30373 -35.42353 -33.90374 -32.84364 -32.23398 -31.15527 -28.63654 -27.02868 -25.65524 -24.59056 -24.08731 -21.91858 -21.24578 -20.31324 -19.71453 -18.46697 -17.27768 -16.45157 -16.22693 -15.42833 -15.14995 -14.66298 -14.56267 -14.52156 -14.44841 -14.27245 -13.89021 -13.56532 -13.38324 -13.23782 -12.65030 -12.49892 -12.23719 -12.10809 -11.98889 -11.76203 -11.58950 -11.53315 -11.44027 -11.28178 -11.10593 -11.02070 -10.96374 -10.84521 -10.69317 -10.54734 -10.48127 -10.41125 -10.35134 -10.12274 -9.84631 -9.68655 -9.27287 -8.69131 -8.49488 -6.11817 -4.17299 0.80368 3.03393 3.26872 3.31881 3.33534 4.27877 4.38024 4.45224 4.58968 4.79642 4.81910 4.90786 4.94024 5.04374 5.07524 5.20048 5.23271 5.32056 5.36546 5.41405 5.59810 5.62083 5.65288 5.66539 5.74409 5.75760 5.79804 5.80982 5.90038 5.93101 5.95043 5.97875 5.99563 6.06056 6.20853 6.27468 6.29871 6.31797 6.43238 6.54126 6.57924 6.72168 6.82255 7.30809 7.36751 7.80923 8.18364 8.85711 9.47340 10.99165 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010102 B = 0.005282 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.182796 B = 5299.662181 C = 6755.362011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 C -0.153 4.153 4 C -0.103 4.103 5 C -0.187 4.187 6 C 0.163 3.837 7 H 0.073 0.927 8 C -0.134 4.134 9 C -0.116 4.116 10 C -0.137 4.137 11 C 0.120 3.880 12 N -1.003 6.003 13 S 2.589 3.411 14 O -0.969 6.969 15 O -0.960 6.960 16 C -0.594 4.594 17 C 0.030 3.970 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.890 5.890 22 Si 0.898 3.102 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.129 0.871 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.066 0.934 45 H 0.121 0.879 46 H 0.118 0.882 47 H 0.031 0.969 48 H 0.033 0.967 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.134 -10.622 10.074 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.211 4.211 4 C -0.141 4.141 5 C -0.225 4.225 6 C 0.057 3.943 7 H 0.091 0.909 8 C -0.173 4.173 9 C -0.153 4.153 10 C -0.176 4.176 11 C -0.006 4.006 12 N -0.839 5.839 13 S 2.690 3.310 14 O -0.960 6.960 15 O -0.950 6.950 16 C -0.727 4.727 17 C -0.009 4.009 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.528 5.528 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.147 0.853 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.113 0.887 44 H 0.084 0.916 45 H 0.139 0.861 46 H 0.136 0.864 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.593 -11.100 9.204 19.145 hybrid contribution -0.194 1.615 0.695 1.769 sum -12.787 -9.485 9.900 18.748 Atomic orbital electron populations 1.21838 0.95701 1.01225 1.01515 1.21135 0.95051 0.96902 0.98638 1.21921 1.02359 0.95412 1.01373 1.21551 0.94325 1.00248 0.97940 1.23044 0.97274 1.01154 1.00996 1.20908 0.78585 0.99771 0.95006 0.90877 1.22059 1.00261 1.00543 0.94416 1.21462 0.95364 1.00435 0.98068 1.21943 0.96176 1.02006 0.97477 1.21377 0.97317 0.97132 0.84750 1.57998 1.14669 1.72693 1.38544 1.05686 0.73095 0.78442 0.73826 1.93507 1.37865 1.78935 1.85657 1.93473 1.70275 1.83995 1.47241 1.30665 1.10177 1.20906 1.10922 1.18936 0.94774 0.96025 0.91119 1.20945 1.34405 0.90174 1.10306 0.92177 1.25048 0.95046 0.99321 0.94932 1.69943 1.33978 1.35105 1.13820 0.86565 0.78283 0.84558 0.78088 1.20095 1.21054 1.20077 0.92958 0.92886 0.93031 0.90830 0.91510 0.92892 0.92993 0.92017 0.91905 0.91029 0.85316 0.91219 0.90808 0.92051 0.92062 0.91303 0.91049 0.88748 0.91617 0.86084 0.86402 0.95038 0.94884 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.19 37.15 0.34 -1.05 16 2 C -0.10 -1.14 2.92 -90.62 -0.26 -1.40 16 3 C -0.15 -1.99 8.95 37.16 0.33 -1.66 16 4 C -0.10 -1.11 4.01 -26.73 -0.11 -1.22 16 5 C -0.19 -2.50 2.99 -26.73 -0.08 -2.58 16 6 C 0.16 1.98 3.04 -67.60 -0.21 1.77 16 7 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 8 C -0.13 -1.34 4.68 -26.61 -0.12 -1.46 16 9 C -0.12 -1.03 5.88 -26.69 -0.16 -1.19 16 10 C -0.14 -1.35 6.08 -26.61 -0.16 -1.51 16 11 C 0.12 1.45 6.38 -3.71 -0.02 1.42 16 12 N -1.00 -14.15 3.21 -106.47 -0.34 -14.50 16 13 S 2.59 47.91 4.83 -107.50 -0.52 47.39 16 14 O -0.97 -20.64 16.42 -57.54 -0.94 -21.59 16 15 O -0.96 -19.33 14.04 -57.54 -0.81 -20.14 16 16 C -0.59 -11.59 5.85 37.16 0.22 -11.37 16 17 C 0.03 0.78 4.98 -27.89 -0.14 0.64 16 18 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 19 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 22 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.00 6.69 -51.93 -0.35 0.66 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.62 6.80 -51.93 -0.35 0.26 16 35 H 0.07 1.04 3.64 -51.93 -0.19 0.85 16 36 H 0.13 2.03 5.49 -51.94 -0.29 1.74 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.63 6.81 -51.93 -0.35 0.27 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.23 6.81 -51.93 -0.35 0.88 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.12 2.14 5.79 -51.92 -0.30 1.84 16 46 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 47 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 49 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 378.66 15.07 5.71 5.71 Total: -1.00 -32.44 378.66 -10.89 -43.33 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -8.91 Total: 1.98 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: -0.78 Total: -32.64 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.39 Total: -40.20 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.75 Total: -41.73 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 47.91 SS G_CDS: -0.52 Total: 47.39 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.44 -10.89 -43.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330954565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.569 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds