Wall clock time and date at job start Tue Mar 31 2020 13:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47219 * 2 1 4 4 C 1.53003 * 109.47043 * 119.99879 * 2 1 3 5 5 C 1.52999 * 109.47105 * 175.00418 * 4 2 1 6 6 C 1.53003 * 109.47215 * 185.28127 * 5 4 2 7 7 H 1.08999 * 109.58589 * 65.72591 * 6 5 4 8 8 C 1.53196 * 109.58375 * 305.44701 * 6 5 4 9 9 C 1.53039 * 109.30959 * 185.43870 * 8 6 5 10 10 C 1.53037 * 109.54218 * 61.36399 * 9 8 6 11 11 C 1.53191 * 109.30966 * 298.63218 * 10 9 8 12 12 N 1.46921 * 109.70238 * 186.08633 * 6 5 4 13 13 S 1.65598 * 120.63350 * 353.46358 * 12 6 5 14 14 O 1.42108 * 104.27463 * 195.90065 * 13 12 6 15 15 O 1.42102 * 104.27457 * 323.75273 * 13 12 6 16 16 C 1.81392 * 104.45056 * 79.82656 * 13 12 6 17 17 C 1.52998 * 109.47172 * 180.02562 * 16 13 12 18 18 C 1.50696 * 109.47455 * 179.97438 * 17 16 13 19 19 H 1.08004 * 120.00022 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00325 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00248 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00035 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47018 * 60.00042 * 22 20 18 24 24 H 1.48501 * 109.46860 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47129 * 300.00035 * 22 20 18 26 26 H 1.08997 * 109.47722 * 300.00240 * 1 2 3 27 27 H 1.09008 * 109.47228 * 60.00334 * 1 2 3 28 28 H 1.09004 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47257 * 240.00020 * 2 1 3 30 30 H 1.09001 * 109.47627 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46928 * 299.99699 * 3 2 1 32 32 H 1.09000 * 109.47499 * 59.99829 * 3 2 1 33 33 H 1.08993 * 109.47140 * 55.00282 * 4 2 1 34 34 H 1.09005 * 109.46969 * 294.99787 * 4 2 1 35 35 H 1.08993 * 109.47471 * 65.27662 * 5 4 2 36 36 H 1.09005 * 109.46852 * 305.27793 * 5 4 2 37 37 H 1.09000 * 109.49581 * 305.38686 * 8 6 5 38 38 H 1.08997 * 109.49577 * 65.44993 * 8 6 5 39 39 H 1.09003 * 109.45409 * 181.38827 * 9 8 6 40 40 H 1.09003 * 109.46041 * 301.33527 * 9 8 6 41 41 H 1.09001 * 109.49688 * 58.58298 * 10 9 8 42 42 H 1.08995 * 109.49551 * 178.68308 * 10 9 8 43 43 H 1.09001 * 109.58496 * 174.42657 * 11 10 9 44 44 H 1.09001 * 109.58646 * 294.84943 * 11 10 9 45 45 H 1.09002 * 109.47292 * 299.99862 * 16 13 12 46 46 H 1.09000 * 109.47604 * 59.99995 * 16 13 12 47 47 H 1.09002 * 109.47276 * 299.99722 * 17 16 13 48 48 H 1.09006 * 109.47213 * 60.00158 * 17 16 13 49 49 H 0.96999 * 120.00288 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.8309 1.1881 6 6 4.0639 -1.6658 2.3692 7 1 3.7088 -2.6913 2.2677 8 6 3.5393 -1.0680 3.6785 9 6 4.1505 -1.8239 4.8606 10 6 5.6729 -1.6695 4.8348 11 6 6.2215 -2.2742 3.5386 12 7 5.5327 -1.6536 2.3987 13 16 6.3956 -0.9538 1.1707 14 8 7.7149 -1.4541 1.3401 15 8 5.6443 -1.2500 0.0015 16 6 6.3373 0.8228 1.5318 17 6 7.1085 1.5878 0.4543 18 6 7.0596 3.0639 0.7538 19 1 6.5309 3.4208 1.6254 20 6 7.6888 3.9589 -0.0852 21 7 8.3314 3.5245 -1.1473 22 14 7.6275 5.7887 0.2858 23 1 8.2442 6.0458 1.6120 24 1 8.3752 6.5312 -0.7606 25 1 6.2140 6.2437 0.3006 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6054 -1.7197 1.2952 34 1 1.7516 -0.1582 2.1370 35 1 4.0030 0.1658 1.2367 36 1 3.8572 -1.3113 0.2543 37 1 3.8187 -0.0160 3.7358 38 1 2.4536 -1.1583 3.7104 39 1 3.7599 -1.4165 5.7931 40 1 3.8913 -2.8802 4.7893 41 1 5.9322 -0.6118 4.8812 42 1 6.1056 -2.1885 5.6900 43 1 7.2917 -2.0795 3.4690 44 1 6.0424 -3.3493 3.5325 45 1 5.3000 1.1576 1.5423 46 1 6.7897 1.0109 2.5055 47 1 8.1459 1.2532 0.4433 48 1 6.6557 1.3999 -0.5193 49 1 8.7744 4.1541 -1.7374 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330954565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:51 Heat of formation + Delta-G solvation = -122.668718 kcal Electronic energy + Delta-G solvation = -26935.296864 eV Core-core repulsion = 23408.501781 eV Total energy + Delta-G solvation = -3526.795084 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.10802 -38.43365 -37.37857 -37.01874 -35.93254 -33.77641 -33.27802 -33.07028 -29.51938 -27.97668 -27.64652 -25.51559 -25.06857 -23.63611 -22.33778 -21.31572 -20.65044 -19.84771 -18.94236 -18.10529 -17.52654 -17.03210 -16.56645 -16.22524 -15.76984 -15.56094 -15.41249 -15.20881 -15.11436 -14.77757 -14.47896 -14.37801 -14.21535 -13.78543 -13.58881 -13.29420 -13.25351 -13.00485 -12.98579 -12.93171 -12.86786 -12.81069 -12.45403 -12.25628 -12.18785 -12.11576 -11.90886 -11.73949 -11.70622 -11.53048 -11.45220 -11.31001 -11.17803 -11.16097 -10.80451 -10.65598 -9.83692 -8.27479 -6.41817 -0.70608 1.38268 1.41841 1.50027 1.72020 2.36109 2.80264 3.05548 3.17159 3.44135 3.84612 3.88141 4.03063 4.03545 4.07762 4.10464 4.17357 4.25025 4.35662 4.40604 4.49471 4.56093 4.70090 4.75321 4.79138 4.85242 4.88649 4.90445 4.96902 5.02619 5.06384 5.09935 5.14891 5.20480 5.23839 5.24442 5.28670 5.32681 5.38124 5.41722 5.48975 5.53308 5.58297 5.65648 5.68232 5.80510 6.04156 6.70710 7.28249 8.84676 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010102 B = 0.005282 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.182796 B = 5299.662181 C = 6755.362011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 C -0.155 4.155 4 C -0.096 4.096 5 C -0.190 4.190 6 C 0.159 3.841 7 H 0.091 0.909 8 C -0.132 4.132 9 C -0.113 4.113 10 C -0.135 4.135 11 C 0.109 3.891 12 N -0.993 5.993 13 S 2.606 3.394 14 O -1.001 7.001 15 O -0.981 6.981 16 C -0.592 4.592 17 C 0.027 3.973 18 C -0.537 4.537 19 H 0.073 0.927 20 C -0.001 4.001 21 N -0.934 5.934 22 Si 0.971 3.029 23 H -0.263 1.263 24 H -0.283 1.283 25 H -0.263 1.263 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.138 0.862 46 H 0.134 0.866 47 H 0.002 0.998 48 H 0.005 0.995 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.631 -10.765 12.973 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 C -0.212 4.212 4 C -0.134 4.134 5 C -0.228 4.228 6 C 0.055 3.945 7 H 0.109 0.891 8 C -0.170 4.170 9 C -0.150 4.150 10 C -0.174 4.174 11 C -0.015 4.015 12 N -0.832 5.832 13 S 2.705 3.295 14 O -0.992 6.992 15 O -0.971 6.971 16 C -0.723 4.723 17 C -0.012 4.012 18 C -0.576 4.576 19 H 0.091 0.909 20 C -0.200 4.200 21 N -0.573 5.573 22 Si 0.794 3.206 23 H -0.187 1.187 24 H -0.208 1.208 25 H -0.187 1.187 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.156 0.844 46 H 0.152 0.848 47 H 0.020 0.980 48 H 0.024 0.976 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.092 -11.235 12.112 22.376 hybrid contribution 0.569 1.569 -0.219 1.683 sum -14.523 -9.666 11.893 21.114 Atomic orbital electron populations 1.21784 0.93630 1.02259 1.02033 1.21151 0.96743 0.95592 0.98523 1.21935 1.00390 0.96971 1.01942 1.21538 0.92128 1.01579 0.98107 1.22982 0.99428 1.00057 1.00380 1.21173 0.76845 1.00716 0.95814 0.89103 1.22079 1.01696 0.99974 0.93289 1.21476 0.94174 1.01189 0.98170 1.21964 0.97277 1.01540 0.96636 1.21675 0.96571 0.98347 0.84934 1.57687 1.15611 1.71711 1.38215 1.04890 0.72537 0.77733 0.74298 1.93456 1.40153 1.79177 1.86384 1.93476 1.70437 1.83951 1.49243 1.30581 1.10321 1.22001 1.09423 1.18753 0.93730 0.96678 0.92004 1.21426 1.34275 0.91228 1.10699 0.90867 1.26090 0.94459 1.04837 0.94577 1.70096 1.35111 1.37010 1.15101 0.85410 0.78920 0.77946 0.78294 1.18746 1.20800 1.18721 0.91848 0.93005 0.91728 0.92593 0.94539 0.93087 0.91681 0.89979 0.90085 0.92772 0.88196 0.92105 0.88408 0.90324 0.90751 0.92201 0.88780 0.90273 0.89597 0.84374 0.84804 0.98002 0.97649 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.19 71.98 0.66 -1.69 16 2 C -0.10 -2.26 2.92 -10.80 -0.03 -2.29 16 3 C -0.16 -4.05 8.95 71.98 0.64 -3.40 16 4 C -0.10 -1.87 4.01 30.59 0.12 -1.75 16 5 C -0.19 -5.00 2.99 30.60 0.09 -4.91 16 6 C 0.16 3.53 3.04 44.98 0.14 3.67 16 7 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 8 C -0.13 -2.16 4.68 30.67 0.14 -2.02 16 9 C -0.11 -1.54 5.88 30.62 0.18 -1.36 16 10 C -0.14 -2.26 6.08 30.67 0.19 -2.07 16 11 C 0.11 2.45 6.38 86.36 0.55 3.01 16 12 N -0.99 -27.20 3.21 -490.76 -1.58 -28.77 16 13 S 2.61 100.04 4.83 -56.49 -0.27 99.76 16 14 O -1.00 -44.44 16.42 -127.65 -2.10 -46.54 16 15 O -0.98 -41.59 14.04 -127.65 -1.79 -43.38 16 16 C -0.59 -23.95 5.85 71.98 0.42 -23.52 16 17 C 0.03 1.47 4.98 29.85 0.15 1.62 16 18 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 19 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 20 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 21 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 22 Si 0.97 43.71 29.54 68.60 2.03 45.73 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.15 6.69 -2.39 -0.02 1.13 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.31 6.80 -2.38 -0.02 1.29 16 35 H 0.05 1.60 3.64 -2.39 -0.01 1.59 16 36 H 0.10 3.25 5.49 -2.66 -0.01 3.24 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.10 1.18 6.81 -2.39 -0.02 1.17 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.08 2.03 6.81 -2.39 -0.02 2.02 16 44 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.14 5.04 5.79 -2.39 -0.01 5.03 16 46 H 0.13 4.88 8.14 -2.39 -0.02 4.86 16 47 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 48 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 49 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -73.51 378.66 1.42 -72.09 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.90 Total: 22.82 kcal Atomic # 6 Polarization: -68.39 SS G_CDS: 3.95 Total: -64.44 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -1.29 Total: -86.05 kcal Atomic # 8 Polarization: -86.03 SS G_CDS: -3.89 Total: -89.92 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 100.04 SS G_CDS: -0.27 Total: 99.76 kcal Total: -73.51 1.42 -72.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330954565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.576 kcal (2) G-P(sol) polarization free energy of solvation -73.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds