Wall clock time and date at job start Tue Mar 31 2020 13:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46924 * 2 1 4 4 C 1.52992 * 109.47295 * 120.00449 * 2 1 3 5 5 C 1.53004 * 109.47172 * 175.00324 * 4 2 1 6 6 C 1.52995 * 109.47348 * 175.11866 * 5 4 2 7 7 H 1.09001 * 109.70319 * 294.71522 * 6 5 4 8 8 C 1.53199 * 109.58805 * 55.06838 * 6 5 4 9 9 C 1.53041 * 109.31296 * 174.42397 * 8 6 5 10 10 C 1.53076 * 109.65892 * 298.69884 * 9 8 6 11 11 C 1.53200 * 109.29261 * 61.15516 * 10 9 8 12 12 N 1.46919 * 109.58836 * 174.35946 * 6 5 4 13 13 S 1.65602 * 120.63298 * 6.58025 * 12 6 5 14 14 O 1.42108 * 104.27289 * 36.44143 * 13 12 6 15 15 O 1.42100 * 104.28003 * 164.29965 * 13 12 6 16 16 C 1.81402 * 104.44951 * 280.37515 * 13 12 6 17 17 C 1.52999 * 109.47020 * 179.97438 * 16 13 12 18 18 C 1.50696 * 109.47264 * 179.97438 * 17 16 13 19 19 H 1.08005 * 119.99659 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00374 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99792 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00189 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47230 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47095 * 120.00447 * 22 20 18 25 25 H 1.48497 * 109.47524 * 240.00395 * 22 20 18 26 26 H 1.08998 * 109.46812 * 299.99367 * 1 2 3 27 27 H 1.08999 * 109.46995 * 59.99848 * 1 2 3 28 28 H 1.09000 * 109.46910 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47242 * 240.00671 * 2 1 3 30 30 H 1.09006 * 109.47077 * 60.00093 * 3 2 1 31 31 H 1.09000 * 109.47458 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47934 * 300.00686 * 3 2 1 33 33 H 1.08999 * 109.47430 * 55.00032 * 4 2 1 34 34 H 1.09004 * 109.47100 * 294.99731 * 4 2 1 35 35 H 1.08993 * 109.47294 * 55.11645 * 5 4 2 36 36 H 1.09004 * 109.46880 * 295.11649 * 5 4 2 37 37 H 1.08994 * 109.49378 * 294.37558 * 8 6 5 38 38 H 1.08997 * 109.49582 * 54.47183 * 8 6 5 39 39 H 1.08996 * 109.45967 * 58.65691 * 9 8 6 40 40 H 1.08999 * 109.45773 * 178.62989 * 9 8 6 41 41 H 1.08998 * 109.39193 * 301.28289 * 10 9 8 42 42 H 1.08993 * 109.62322 * 181.17110 * 10 9 8 43 43 H 1.09002 * 109.58241 * 185.72026 * 11 10 9 44 44 H 1.08997 * 109.58576 * 65.43426 * 11 10 9 45 45 H 1.09005 * 109.46716 * 299.99519 * 16 13 12 46 46 H 1.08993 * 109.47274 * 59.99592 * 16 13 12 47 47 H 1.09000 * 109.47296 * 300.00194 * 17 16 13 48 48 H 1.09006 * 109.47009 * 59.99724 * 17 16 13 49 49 H 0.96998 * 119.99630 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.8310 1.1878 6 6 4.0851 -1.4422 2.4904 7 1 3.8842 -0.7645 3.3202 8 6 3.3887 -2.7833 2.7425 9 6 4.0111 -3.4540 3.9692 10 6 5.4961 -3.7218 3.7119 11 6 6.2154 -2.3914 3.4673 12 7 5.5319 -1.6735 2.3826 13 16 6.3765 -1.1359 1.0635 14 8 5.7636 0.1039 0.7366 15 8 7.7368 -1.1960 1.4699 16 6 6.0411 -2.3704 -0.2226 17 6 6.7747 -1.9806 -1.5074 18 6 6.4966 -3.0064 -2.5757 19 1 5.8599 -3.8517 -2.3599 20 6 7.0541 -2.8654 -3.8288 21 7 7.8290 -1.8357 -4.0917 22 14 6.7088 -4.1366 -5.1532 23 1 5.8136 -5.1887 -4.6082 24 1 6.0514 -3.4791 -6.3111 25 1 7.9863 -4.7525 -5.5935 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8901 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9565 -0.8899 33 1 1.6055 -1.7199 1.2950 34 1 1.7517 -0.1584 2.1369 35 1 3.9956 0.1614 1.0548 36 1 3.8501 -1.4663 0.3492 37 1 2.3267 -2.6139 2.9200 38 1 3.5145 -3.4277 1.8725 39 1 3.9069 -2.7983 4.8336 40 1 3.5011 -4.3972 4.1653 41 1 5.6021 -4.3593 2.8342 42 1 5.9340 -4.2182 4.5778 43 1 7.2504 -2.5824 3.1837 44 1 6.1904 -1.7901 4.3760 45 1 6.3887 -3.3477 0.1124 46 1 4.9691 -2.4124 -0.4152 47 1 6.4268 -1.0033 -1.8422 48 1 7.8468 -1.9382 -1.3151 49 1 8.2215 -1.7368 -4.9732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330954566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:56 Heat of formation + Delta-G solvation = -102.365957 kcal Electronic energy + Delta-G solvation = -26834.533786 eV Core-core repulsion = 23308.619096 eV Total energy + Delta-G solvation = -3525.914690 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.13718 -37.04003 -36.30192 -35.42541 -33.90866 -32.84635 -32.23973 -31.15215 -28.63553 -27.04696 -25.66145 -24.61115 -24.08215 -21.89567 -21.26396 -20.24838 -19.82859 -18.45125 -17.26586 -16.43743 -16.12944 -15.46603 -15.32988 -14.65576 -14.60354 -14.56443 -14.48362 -14.14799 -13.80857 -13.53151 -13.32400 -13.28316 -12.82551 -12.53355 -12.23074 -12.06567 -11.90323 -11.76483 -11.58338 -11.53623 -11.47687 -11.28204 -11.13461 -11.00971 -10.97885 -10.85903 -10.64803 -10.60648 -10.53962 -10.38915 -10.35759 -10.16041 -9.79228 -9.64777 -9.25249 -8.69033 -8.50400 -6.12452 -4.17700 0.80336 3.03289 3.24796 3.32208 3.35511 4.27534 4.37792 4.45145 4.58780 4.79610 4.81842 4.89161 4.96457 5.04495 5.06661 5.19534 5.22853 5.29550 5.34768 5.45409 5.58948 5.62250 5.65588 5.65911 5.72607 5.76095 5.80781 5.81198 5.85729 5.93450 5.95253 5.97383 6.00131 6.06019 6.18129 6.26422 6.29898 6.31300 6.39608 6.47887 6.58559 6.77963 6.82856 7.30913 7.36658 7.80939 8.18141 8.85878 9.47065 10.98655 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009856 B = 0.005134 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.162781 B = 5452.068699 C = 6820.187009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C -0.154 4.154 4 C -0.102 4.102 5 C -0.191 4.191 6 C 0.164 3.836 7 H 0.073 0.927 8 C -0.134 4.134 9 C -0.116 4.116 10 C -0.137 4.137 11 C 0.119 3.881 12 N -1.003 6.003 13 S 2.590 3.410 14 O -0.960 6.960 15 O -0.969 6.969 16 C -0.594 4.594 17 C 0.029 3.971 18 C -0.518 4.518 19 H 0.061 0.939 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.134 0.866 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.065 0.935 45 H 0.117 0.883 46 H 0.121 0.879 47 H 0.033 0.967 48 H 0.031 0.969 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.140 -0.502 15.655 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.211 4.211 4 C -0.140 4.140 5 C -0.229 4.229 6 C 0.058 3.942 7 H 0.091 0.909 8 C -0.173 4.173 9 C -0.153 4.153 10 C -0.176 4.176 11 C -0.006 4.006 12 N -0.839 5.839 13 S 2.690 3.310 14 O -0.950 6.950 15 O -0.960 6.960 16 C -0.726 4.726 17 C -0.010 4.010 18 C -0.557 4.557 19 H 0.079 0.921 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.725 3.275 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.152 0.848 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.084 0.916 45 H 0.136 0.864 46 H 0.140 0.860 47 H 0.051 0.949 48 H 0.050 0.950 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.478 0.402 15.550 19.332 hybrid contribution -0.469 -1.399 -0.961 1.761 sum -11.948 -0.998 14.589 18.883 Atomic orbital electron populations 1.21836 0.95674 1.01337 1.01421 1.21123 0.95097 0.96903 0.98731 1.21938 1.02659 0.95488 1.01011 1.21542 0.94305 1.00270 0.97903 1.23113 0.97597 1.06353 0.95834 1.20905 0.78686 0.95901 0.98722 0.90862 1.22060 0.99565 0.96844 0.98827 1.21465 0.95572 1.00343 0.97948 1.21949 0.95966 0.97466 1.02219 1.21370 0.96666 0.92266 0.90295 1.57997 1.17179 1.73284 1.35440 1.05662 0.73335 0.77120 0.74850 1.93460 1.76021 1.41333 1.84202 1.93505 1.33887 1.87696 1.80872 1.30665 1.10680 1.15852 1.15451 1.18949 0.95231 0.98502 0.88271 1.21030 1.30550 1.08616 0.95524 0.92068 1.25060 0.94921 0.95800 0.98663 1.69968 1.31820 1.28856 1.22215 0.86441 0.78183 0.81299 0.81548 1.19662 1.20780 1.20784 0.93014 0.92877 0.92965 0.90783 0.93190 0.91019 0.93092 0.91962 0.91985 0.84812 0.91210 0.90804 0.91208 0.92081 0.92049 0.91323 0.91018 0.88757 0.91639 0.86424 0.86039 0.94857 0.95025 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.19 37.16 0.34 -1.06 16 2 C -0.10 -1.16 2.92 -90.62 -0.26 -1.42 16 3 C -0.15 -1.86 8.95 37.16 0.33 -1.53 16 4 C -0.10 -1.11 4.04 -26.73 -0.11 -1.22 16 5 C -0.19 -2.56 3.23 -26.73 -0.09 -2.65 16 6 C 0.16 1.98 3.04 -67.60 -0.21 1.78 16 7 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 8 C -0.13 -1.34 4.70 -26.61 -0.12 -1.46 16 9 C -0.12 -1.04 5.88 -26.67 -0.16 -1.19 16 10 C -0.14 -1.35 6.09 -26.59 -0.16 -1.51 16 11 C 0.12 1.44 6.37 -3.70 -0.02 1.42 16 12 N -1.00 -14.12 3.21 -106.47 -0.34 -14.47 16 13 S 2.59 47.75 4.83 -107.50 -0.52 47.23 16 14 O -0.96 -19.17 14.04 -57.54 -0.81 -19.98 16 15 O -0.97 -20.59 16.41 -57.54 -0.94 -21.53 16 16 C -0.59 -11.60 5.85 37.16 0.22 -11.39 16 17 C 0.03 0.75 4.98 -27.89 -0.14 0.62 16 18 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 19 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 22 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.01 6.46 -51.93 -0.34 0.68 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.61 6.78 -51.93 -0.35 0.25 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.13 2.09 3.65 -51.98 -0.19 1.90 16 36 H 0.07 1.01 4.95 -51.93 -0.26 0.75 16 37 H 0.07 0.63 6.82 -51.93 -0.35 0.27 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 1.23 6.80 -51.93 -0.35 0.87 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 46 H 0.12 2.16 5.76 -51.93 -0.30 1.86 16 47 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 378.15 15.07 5.70 5.70 Total: -1.00 -32.52 378.15 -10.86 -43.37 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -8.87 Total: 1.93 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: -0.79 Total: -32.70 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.39 Total: -40.23 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -1.75 Total: -41.51 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 47.75 SS G_CDS: -0.52 Total: 47.23 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.52 -10.86 -43.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330954566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.991 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds