Wall clock time and date at job start Tue Mar 31 2020 13:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46924 * 2 1 4 4 C 1.52992 * 109.47295 * 120.00449 * 2 1 3 5 5 C 1.53004 * 109.47172 * 175.00324 * 4 2 1 6 6 C 1.52995 * 109.47348 * 175.11866 * 5 4 2 7 7 H 1.09001 * 109.70319 * 294.71522 * 6 5 4 8 8 C 1.53199 * 109.58805 * 55.06838 * 6 5 4 9 9 C 1.53041 * 109.31296 * 174.42397 * 8 6 5 10 10 C 1.53076 * 109.65892 * 298.69884 * 9 8 6 11 11 C 1.53200 * 109.29261 * 61.15516 * 10 9 8 12 12 N 1.46919 * 109.58836 * 174.35946 * 6 5 4 13 13 S 1.65602 * 120.63298 * 6.58025 * 12 6 5 14 14 O 1.42108 * 104.27289 * 36.44143 * 13 12 6 15 15 O 1.42100 * 104.28003 * 164.29965 * 13 12 6 16 16 C 1.81402 * 104.44951 * 280.37515 * 13 12 6 17 17 C 1.52999 * 109.47020 * 179.97438 * 16 13 12 18 18 C 1.50696 * 109.47264 * 179.97438 * 17 16 13 19 19 H 1.08005 * 119.99659 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00374 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99792 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00189 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47230 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47095 * 120.00447 * 22 20 18 25 25 H 1.48497 * 109.47524 * 240.00395 * 22 20 18 26 26 H 1.08998 * 109.46812 * 299.99367 * 1 2 3 27 27 H 1.08999 * 109.46995 * 59.99848 * 1 2 3 28 28 H 1.09000 * 109.46910 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47242 * 240.00671 * 2 1 3 30 30 H 1.09006 * 109.47077 * 60.00093 * 3 2 1 31 31 H 1.09000 * 109.47458 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47934 * 300.00686 * 3 2 1 33 33 H 1.08999 * 109.47430 * 55.00032 * 4 2 1 34 34 H 1.09004 * 109.47100 * 294.99731 * 4 2 1 35 35 H 1.08993 * 109.47294 * 55.11645 * 5 4 2 36 36 H 1.09004 * 109.46880 * 295.11649 * 5 4 2 37 37 H 1.08994 * 109.49378 * 294.37558 * 8 6 5 38 38 H 1.08997 * 109.49582 * 54.47183 * 8 6 5 39 39 H 1.08996 * 109.45967 * 58.65691 * 9 8 6 40 40 H 1.08999 * 109.45773 * 178.62989 * 9 8 6 41 41 H 1.08998 * 109.39193 * 301.28289 * 10 9 8 42 42 H 1.08993 * 109.62322 * 181.17110 * 10 9 8 43 43 H 1.09002 * 109.58241 * 185.72026 * 11 10 9 44 44 H 1.08997 * 109.58576 * 65.43426 * 11 10 9 45 45 H 1.09005 * 109.46716 * 299.99519 * 16 13 12 46 46 H 1.08993 * 109.47274 * 59.99592 * 16 13 12 47 47 H 1.09000 * 109.47296 * 300.00194 * 17 16 13 48 48 H 1.09006 * 109.47009 * 59.99724 * 17 16 13 49 49 H 0.96998 * 119.99630 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.8310 1.1878 6 6 4.0851 -1.4422 2.4904 7 1 3.8842 -0.7645 3.3202 8 6 3.3887 -2.7833 2.7425 9 6 4.0111 -3.4540 3.9692 10 6 5.4961 -3.7218 3.7119 11 6 6.2154 -2.3914 3.4673 12 7 5.5319 -1.6735 2.3826 13 16 6.3765 -1.1359 1.0635 14 8 5.7636 0.1039 0.7366 15 8 7.7368 -1.1960 1.4699 16 6 6.0411 -2.3704 -0.2226 17 6 6.7747 -1.9806 -1.5074 18 6 6.4966 -3.0064 -2.5757 19 1 5.8599 -3.8517 -2.3599 20 6 7.0541 -2.8654 -3.8288 21 7 7.8290 -1.8357 -4.0917 22 14 6.7088 -4.1366 -5.1532 23 1 5.8136 -5.1887 -4.6082 24 1 6.0514 -3.4791 -6.3111 25 1 7.9863 -4.7525 -5.5935 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8901 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9565 -0.8899 33 1 1.6055 -1.7199 1.2950 34 1 1.7517 -0.1584 2.1369 35 1 3.9956 0.1614 1.0548 36 1 3.8501 -1.4663 0.3492 37 1 2.3267 -2.6139 2.9200 38 1 3.5145 -3.4277 1.8725 39 1 3.9069 -2.7983 4.8336 40 1 3.5011 -4.3972 4.1653 41 1 5.6021 -4.3593 2.8342 42 1 5.9340 -4.2182 4.5778 43 1 7.2504 -2.5824 3.1837 44 1 6.1904 -1.7901 4.3760 45 1 6.3887 -3.3477 0.1124 46 1 4.9691 -2.4124 -0.4152 47 1 6.4268 -1.0033 -1.8422 48 1 7.8468 -1.9382 -1.3151 49 1 8.2215 -1.7368 -4.9732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330954566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:55 Heat of formation + Delta-G solvation = -122.195621 kcal Electronic energy + Delta-G solvation = -26835.393665 eV Core-core repulsion = 23308.619096 eV Total energy + Delta-G solvation = -3526.774569 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.10246 -38.43385 -37.37144 -37.01021 -35.93950 -33.78033 -33.28633 -33.06086 -29.51524 -27.94648 -27.66731 -25.53132 -25.06643 -23.62789 -22.33290 -21.25658 -20.76286 -19.82272 -18.94203 -18.08753 -17.45357 -17.04230 -16.57037 -16.29004 -15.85147 -15.54949 -15.53770 -15.20033 -14.97767 -14.55362 -14.49492 -14.42042 -14.25133 -13.87256 -13.70770 -13.29815 -13.15915 -12.99103 -12.97649 -12.89123 -12.83083 -12.72205 -12.51840 -12.29222 -12.21594 -12.12527 -11.86218 -11.78428 -11.67745 -11.49624 -11.45305 -11.38265 -11.18070 -11.14270 -10.72442 -10.67567 -9.83407 -8.28465 -6.42687 -0.70125 1.38308 1.39075 1.52377 1.72349 2.35667 2.80507 3.04764 3.17657 3.44415 3.83705 3.89277 4.02693 4.04301 4.08660 4.12635 4.17387 4.24379 4.34820 4.37304 4.49348 4.61669 4.70506 4.74601 4.79512 4.85894 4.87773 4.92122 4.96994 5.02557 5.08480 5.10023 5.13394 5.21278 5.23486 5.23722 5.28345 5.33197 5.37350 5.41015 5.44651 5.55561 5.60137 5.65902 5.72691 5.80995 6.03704 6.70494 7.27546 8.84169 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009856 B = 0.005134 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.162781 B = 5452.068699 C = 6820.187009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C -0.154 4.154 4 C -0.095 4.095 5 C -0.196 4.196 6 C 0.160 3.840 7 H 0.091 0.909 8 C -0.132 4.132 9 C -0.113 4.113 10 C -0.135 4.135 11 C 0.109 3.891 12 N -0.993 5.993 13 S 2.608 3.392 14 O -0.980 6.980 15 O -1.001 7.001 16 C -0.592 4.592 17 C 0.026 3.974 18 C -0.537 4.537 19 H 0.073 0.927 20 C -0.003 4.003 21 N -0.934 5.934 22 Si 0.973 3.027 23 H -0.256 1.256 24 H -0.276 1.276 25 H -0.277 1.277 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.133 0.867 46 H 0.139 0.861 47 H 0.006 0.994 48 H 0.002 0.998 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.760 -2.422 17.518 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 C -0.211 4.211 4 C -0.133 4.133 5 C -0.234 4.234 6 C 0.055 3.945 7 H 0.109 0.891 8 C -0.171 4.171 9 C -0.150 4.150 10 C -0.174 4.174 11 C -0.015 4.015 12 N -0.832 5.832 13 S 2.707 3.293 14 O -0.970 6.970 15 O -0.992 6.992 16 C -0.724 4.724 17 C -0.013 4.013 18 C -0.576 4.576 19 H 0.091 0.909 20 C -0.201 4.201 21 N -0.574 5.574 22 Si 0.796 3.204 23 H -0.180 1.180 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.126 0.874 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.151 0.849 46 H 0.157 0.843 47 H 0.024 0.976 48 H 0.020 0.980 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.101 -1.531 17.409 22.456 hybrid contribution 0.348 -0.732 -1.465 1.675 sum -13.754 -2.263 15.943 21.177 Atomic orbital electron populations 1.21783 0.93689 1.02164 1.02074 1.21156 0.96743 0.96089 0.98354 1.21928 1.00788 0.96526 1.01845 1.21526 0.92141 1.01501 0.98130 1.23068 0.99695 1.04570 0.96078 1.21164 0.77124 0.97815 0.98357 0.89117 1.22081 1.00713 0.95087 0.99188 1.21479 0.94520 1.01357 0.97661 1.21971 0.96822 0.95779 1.02838 1.21665 0.96149 0.93844 0.89885 1.57689 1.18184 1.73385 1.33962 1.04860 0.72750 0.76558 0.75171 1.93468 1.76160 1.42428 1.84936 1.93455 1.36256 1.87999 1.81456 1.30587 1.10957 1.17337 1.13477 1.18770 0.94121 0.97210 0.91203 1.21499 1.30546 1.09193 0.96319 0.90872 1.26109 0.94511 0.98014 1.01459 1.70112 1.33099 1.31090 1.23070 0.85283 0.78383 0.78621 0.78108 1.17966 1.20199 1.20213 0.91620 0.93011 0.92034 0.93051 0.91564 0.93901 0.93066 0.90112 0.90094 0.87390 0.93016 0.88428 0.92105 0.90778 0.90339 0.92231 0.88750 0.90278 0.89627 0.84863 0.84334 0.97577 0.97971 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.19 71.98 0.66 -1.73 16 2 C -0.10 -2.34 2.92 -10.80 -0.03 -2.37 16 3 C -0.15 -3.75 8.95 71.98 0.64 -3.10 16 4 C -0.10 -1.87 4.04 30.59 0.12 -1.75 16 5 C -0.20 -5.15 3.23 30.59 0.10 -5.05 16 6 C 0.16 3.55 3.04 44.98 0.14 3.69 16 7 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 8 C -0.13 -2.18 4.70 30.67 0.14 -2.04 16 9 C -0.11 -1.55 5.88 30.63 0.18 -1.37 16 10 C -0.14 -2.26 6.09 30.69 0.19 -2.08 16 11 C 0.11 2.45 6.37 86.36 0.55 3.00 16 12 N -0.99 -27.12 3.21 -490.76 -1.58 -28.70 16 13 S 2.61 99.60 4.83 -56.49 -0.27 99.33 16 14 O -0.98 -41.15 14.04 -127.65 -1.79 -42.95 16 15 O -1.00 -44.29 16.41 -127.65 -2.10 -46.39 16 16 C -0.59 -23.95 5.85 71.98 0.42 -23.53 16 17 C 0.03 1.39 4.98 29.85 0.15 1.54 16 18 C -0.54 -30.40 9.11 25.60 0.23 -30.17 16 19 H 0.07 3.86 7.74 -2.91 -0.02 3.83 16 20 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 21 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 22 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 23 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.04 1.28 6.46 -2.39 -0.02 1.27 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.30 6.78 -2.39 -0.02 1.29 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 35 H 0.11 3.47 3.65 -3.21 -0.01 3.46 16 36 H 0.05 1.52 4.95 -2.39 -0.01 1.51 16 37 H 0.10 1.19 6.82 -2.39 -0.02 1.18 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 43 H 0.08 2.03 6.80 -2.39 -0.02 2.02 16 44 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.13 4.86 8.14 -2.39 -0.02 4.84 16 46 H 0.14 5.05 5.76 -2.39 -0.01 5.04 16 47 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 49 H 0.27 15.36 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -73.50 378.15 1.43 -72.07 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.90 Total: 22.77 kcal Atomic # 6 Polarization: -68.59 SS G_CDS: 3.96 Total: -64.63 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -1.29 Total: -86.04 kcal Atomic # 8 Polarization: -85.44 SS G_CDS: -3.89 Total: -89.33 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 99.60 SS G_CDS: -0.27 Total: 99.33 kcal Total: -73.50 1.43 -72.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330954566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.129 kcal (2) G-P(sol) polarization free energy of solvation -73.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds