Wall clock time and date at job start Tue Mar 31 2020 11:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.54967 * 2 1 4 4 C 1.53288 * 109.51591 * 120.12724 * 2 1 3 5 5 N 1.47152 * 108.38623 * 172.22896 * 4 2 1 6 6 C 1.34773 * 120.98238 * 129.43871 * 5 4 2 7 7 O 1.21284 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99984 * 180.02562 * 6 5 4 9 9 C 1.52994 * 109.46995 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.47639 * 54.05331 * 9 8 6 11 11 C 1.50698 * 109.46998 * 294.05407 * 9 8 6 12 12 H 1.08002 * 120.00397 * 330.08382 * 11 9 8 13 13 C 1.37877 * 119.99983 * 150.08385 * 11 9 8 14 14 N 1.31513 * 120.00147 * 6.55933 * 13 11 9 15 15 Si 1.86806 * 120.00054 * 186.55449 * 13 11 9 16 16 H 1.48505 * 109.47142 * 180.02562 * 15 13 11 17 17 H 1.48498 * 109.47340 * 300.00345 * 15 13 11 18 18 H 1.48505 * 109.46728 * 60.00313 * 15 13 11 19 19 C 1.50704 * 109.47072 * 174.05777 * 9 8 6 20 20 C 1.38232 * 120.00156 * 64.29986 * 19 9 8 21 21 C 1.38227 * 120.00423 * 179.81276 * 20 19 9 22 22 C 1.38238 * 119.99674 * 0.39266 * 21 20 19 23 23 C 1.38237 * 119.99909 * 359.86442 * 22 21 20 24 24 C 1.38229 * 119.99861 * 359.94762 * 23 22 21 25 25 C 1.47154 * 118.03238 * 309.71403 * 5 4 2 26 26 C 1.52877 * 108.60865 * 50.23037 * 25 5 4 27 27 O 1.42958 * 109.51346 * 239.87655 * 2 1 3 28 28 H 1.08995 * 109.47017 * 299.87006 * 1 2 3 29 29 H 1.08996 * 109.47559 * 59.87673 * 1 2 3 30 30 H 1.09007 * 109.46949 * 179.87299 * 1 2 3 31 31 H 1.09000 * 109.46569 * 180.13008 * 3 2 1 32 32 H 1.09003 * 109.46959 * 300.12374 * 3 2 1 33 33 H 1.08998 * 109.46996 * 60.12456 * 3 2 1 34 34 H 1.09005 * 109.68173 * 52.50276 * 4 2 1 35 35 H 1.09003 * 109.68247 * 291.95631 * 4 2 1 36 36 H 1.08997 * 109.46866 * 60.00030 * 8 6 5 37 37 H 1.09004 * 109.46662 * 299.99914 * 8 6 5 38 38 H 0.96997 * 120.00185 * 354.72930 * 14 13 11 39 39 H 1.08007 * 119.99790 * 359.97438 * 20 19 9 40 40 H 1.08004 * 120.00499 * 180.23296 * 21 20 19 41 41 H 1.08006 * 119.99774 * 179.83158 * 22 21 20 42 42 H 1.07995 * 119.99599 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.99707 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.67730 * 170.01009 * 25 5 4 45 45 H 1.09000 * 109.68113 * 290.56087 * 25 5 4 46 46 H 1.08990 * 109.58513 * 187.92273 * 26 25 5 47 47 H 1.09005 * 109.40977 * 67.83604 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0420 1.4419 0.0000 4 6 2.0421 -0.7252 1.2496 5 7 3.5013 -0.8761 1.1335 6 6 4.3194 -0.5032 2.1375 7 8 3.8555 -0.0357 3.1559 8 6 5.8107 -0.6671 1.9946 9 6 6.5023 -0.1717 3.2662 10 1 6.0772 -0.6789 4.1323 11 6 6.2962 1.3148 3.4035 12 1 6.1856 1.9284 2.5217 13 6 6.2490 1.8915 4.6550 14 7 6.5115 1.1693 5.7222 15 14 5.8123 3.6989 4.8346 16 1 5.8308 4.0721 6.2719 17 1 6.8029 4.5233 4.0968 18 1 4.4565 3.9381 4.2780 19 6 7.9775 -0.4689 3.1841 20 6 8.7521 0.1394 2.2141 21 6 10.1059 -0.1302 2.1411 22 6 10.6836 -1.0143 3.0331 23 6 9.9079 -1.6266 3.9997 24 6 8.5549 -1.3540 4.0750 25 6 4.0410 -1.4404 -0.1137 26 6 3.4313 -0.6853 -1.2949 27 8 2.0075 -0.6762 -1.1655 28 1 -0.3633 0.5118 0.8911 29 1 -0.3634 0.5157 -0.8888 30 1 -0.3633 -1.0277 -0.0023 31 1 3.1320 1.4403 -0.0023 32 1 1.6775 1.9568 -0.8889 33 1 1.6812 1.9555 0.8911 34 1 1.5759 -1.7079 1.3207 35 1 1.8030 -0.1399 2.1376 36 1 6.1599 -0.0864 1.1409 37 1 6.0472 -1.7198 1.8393 38 1 6.6632 0.2150 5.6368 39 1 8.3000 0.8273 1.5149 40 1 10.7118 0.3480 1.3857 41 1 11.7409 -1.2270 2.9744 42 1 10.3592 -2.3176 4.6962 43 1 7.9490 -1.8321 4.8305 44 1 5.1252 -1.3285 -0.1282 45 1 3.7795 -2.4964 -0.1822 46 1 3.7090 -1.1784 -2.2264 47 1 3.8029 0.3394 -1.3005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331037634.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:32 Heat of formation + Delta-G solvation = -58.454816 kcal Electronic energy + Delta-G solvation = -27730.531159 eV Core-core repulsion = 24071.076648 eV Total energy + Delta-G solvation = -3659.454511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.37240 -38.75141 -37.97432 -34.56124 -34.30655 -33.68646 -31.34847 -30.13586 -29.18375 -29.05895 -27.40890 -26.51994 -24.53973 -23.33152 -22.81445 -21.69408 -20.28792 -19.67487 -18.59961 -17.01881 -16.66177 -16.54408 -15.89944 -15.52199 -15.40464 -14.85542 -14.62923 -14.44228 -14.06197 -13.68275 -13.56980 -13.29928 -13.22070 -12.74563 -12.49344 -12.41977 -12.29467 -12.13981 -11.99815 -11.93735 -11.80911 -11.50794 -11.39387 -11.26658 -10.98988 -10.72921 -10.46873 -10.44404 -10.15981 -10.06448 -9.97502 -9.66501 -9.04733 -8.65712 -8.30658 -8.19628 -8.16347 -7.65937 -6.25360 -3.93174 2.16659 2.22387 3.21346 3.37166 3.47618 3.53078 3.64401 3.68503 4.58221 4.62217 4.64823 4.83602 4.85214 4.94283 5.08265 5.18133 5.28308 5.47090 5.51173 5.54783 5.57639 5.60333 5.61365 5.68165 5.73688 5.77066 5.82013 5.86282 5.92286 5.94796 6.02542 6.07270 6.13134 6.23906 6.28935 6.38835 6.60378 6.73072 6.79751 6.91238 7.13231 7.17248 7.20098 7.35510 7.69198 7.80624 7.84202 8.19670 8.47920 8.89640 8.95890 9.76111 11.14899 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012600 B = 0.004660 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.681197 B = 6006.713663 C = 7372.297470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.098 3.902 3 C -0.174 4.174 4 C 0.093 3.907 5 N -0.631 5.631 6 C 0.519 3.481 7 O -0.495 6.495 8 C -0.114 4.114 9 C 0.072 3.928 10 H 0.051 0.949 11 C -0.568 4.568 12 H 0.044 0.956 13 C 0.033 3.967 14 N -0.904 5.904 15 Si 1.061 2.939 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.289 1.289 19 C -0.030 4.030 20 C -0.108 4.108 21 C -0.129 4.129 22 C -0.153 4.153 23 C -0.124 4.124 24 C -0.130 4.130 25 C 0.077 3.923 26 C 0.044 3.956 27 O -0.375 6.375 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.270 0.730 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.069 0.931 46 H 0.102 0.898 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 -5.591 -13.634 15.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 C -0.231 4.231 4 C -0.030 4.030 5 N -0.369 5.369 6 C 0.308 3.692 7 O -0.366 6.366 8 C -0.155 4.155 9 C 0.053 3.947 10 H 0.069 0.931 11 C -0.605 4.605 12 H 0.062 0.938 13 C -0.173 4.173 14 N -0.540 5.540 15 Si 0.891 3.109 16 H -0.209 1.209 17 H -0.218 1.218 18 H -0.215 1.215 19 C -0.031 4.031 20 C -0.126 4.126 21 C -0.147 4.147 22 C -0.171 4.171 23 C -0.142 4.142 24 C -0.148 4.148 25 C -0.047 4.047 26 C -0.034 4.034 27 O -0.294 6.294 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.113 0.887 45 H 0.088 0.912 46 H 0.120 0.880 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.034 -4.173 -12.023 13.686 hybrid contribution 0.521 -1.062 -1.031 1.569 sum -4.513 -5.235 -13.054 14.770 Atomic orbital electron populations 1.21708 0.91908 1.02855 1.02779 1.21890 0.94921 0.91806 0.85535 1.22341 1.02506 0.95692 1.02606 1.22130 0.81225 1.00743 0.98945 1.48306 1.06035 1.65766 1.16805 1.20908 0.89290 0.76728 0.82319 1.90741 1.76783 1.41012 1.28092 1.21704 0.90892 1.00369 1.02493 1.17874 0.86029 0.98280 0.92523 0.93109 1.21500 1.53720 0.90707 0.94602 0.93759 1.25568 0.93307 1.06080 0.92330 1.70758 1.43315 1.08481 1.31429 0.83660 0.76315 0.74926 0.76034 1.20900 1.21760 1.21523 1.20809 0.99206 0.90936 0.92147 1.20901 0.93060 0.99324 0.99354 1.21009 0.95309 0.98987 0.99427 1.20828 0.98752 0.99924 0.97598 1.20967 0.94331 1.00416 0.98499 1.21066 0.94707 0.99211 0.99825 1.22218 1.00022 0.97927 0.84543 1.22904 0.81727 1.00585 0.98146 1.87948 1.20725 1.77012 1.43705 0.90764 0.91624 0.91756 0.91700 0.92082 0.91166 0.91641 0.88258 0.90364 0.91692 0.91870 0.86822 0.87449 0.87568 0.87448 0.87188 0.88713 0.91238 0.88047 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 8.85 37.16 0.33 -1.03 16 2 C 0.10 1.23 1.11 -90.47 -0.10 1.13 16 3 C -0.17 -2.29 8.10 37.16 0.30 -1.98 16 4 C 0.09 1.35 5.31 -3.54 -0.02 1.33 16 5 N -0.63 -9.95 2.54 -172.53 -0.44 -10.39 16 6 C 0.52 10.43 7.47 -10.98 -0.08 10.35 16 7 O -0.50 -12.33 14.48 5.55 0.08 -12.25 16 8 C -0.11 -2.21 3.31 -27.88 -0.09 -2.30 16 9 C 0.07 1.71 1.31 -92.93 -0.12 1.59 16 10 H 0.05 1.37 6.23 -51.93 -0.32 1.04 16 11 C -0.57 -15.30 6.40 -34.44 -0.22 -15.52 16 12 H 0.04 1.20 7.82 -52.49 -0.41 0.79 16 13 C 0.03 0.94 5.45 -17.82 -0.10 0.85 16 14 N -0.90 -27.53 13.63 55.43 0.76 -26.77 16 15 Si 1.06 26.20 29.91 -169.99 -5.08 21.11 16 16 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 C -0.03 -0.66 4.77 -104.62 -0.50 -1.16 16 20 C -0.11 -2.18 8.88 -39.59 -0.35 -2.53 16 21 C -0.13 -2.29 10.05 -39.59 -0.40 -2.69 16 22 C -0.15 -2.63 10.05 -39.58 -0.40 -3.02 16 23 C -0.12 -2.26 10.05 -39.59 -0.40 -2.66 16 24 C -0.13 -2.70 9.67 -39.59 -0.38 -3.08 16 25 C 0.08 0.92 6.51 -3.75 -0.02 0.90 16 26 C 0.04 0.48 6.58 37.09 0.24 0.72 16 27 O -0.37 -4.73 10.23 -35.23 -0.36 -5.09 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.96 6.11 -51.93 -0.32 0.64 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 1.63 7.08 -51.93 -0.37 1.27 16 36 H 0.08 1.40 7.37 -51.93 -0.38 1.02 16 37 H 0.06 1.10 8.02 -51.93 -0.42 0.69 16 38 H 0.27 8.13 6.68 -40.82 -0.27 7.86 16 39 H 0.11 2.22 7.80 -52.48 -0.41 1.82 16 40 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 41 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 42 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.11 2.26 7.95 -52.49 -0.42 1.85 16 44 H 0.09 1.06 6.05 -51.93 -0.31 0.74 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 0.68 6.25 -51.93 -0.32 0.36 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -33.14 372.66 -9.14 -42.28 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -7.40 Total: 4.61 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -2.31 Total: -19.11 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.32 Total: -37.16 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.28 Total: -17.35 kcal Atomic # 14 Polarization: 26.20 SS G_CDS: -5.08 Total: 21.11 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.14 -9.14 -42.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331037634.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.171 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds