Wall clock time and date at job start Tue Mar 31 2020 11:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.54967 * 2 1 4 4 C 1.53288 * 109.51591 * 120.12724 * 2 1 3 5 5 N 1.47152 * 108.38623 * 172.22896 * 4 2 1 6 6 C 1.34773 * 120.98238 * 129.43871 * 5 4 2 7 7 O 1.21284 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99984 * 180.02562 * 6 5 4 9 9 C 1.52994 * 109.46995 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.47639 * 54.05331 * 9 8 6 11 11 C 1.50698 * 109.46998 * 294.05407 * 9 8 6 12 12 H 1.08002 * 120.00397 * 330.08382 * 11 9 8 13 13 C 1.37877 * 119.99983 * 150.08385 * 11 9 8 14 14 N 1.31513 * 120.00147 * 6.55933 * 13 11 9 15 15 Si 1.86806 * 120.00054 * 186.55449 * 13 11 9 16 16 H 1.48505 * 109.47142 * 180.02562 * 15 13 11 17 17 H 1.48498 * 109.47340 * 300.00345 * 15 13 11 18 18 H 1.48505 * 109.46728 * 60.00313 * 15 13 11 19 19 C 1.50704 * 109.47072 * 174.05777 * 9 8 6 20 20 C 1.38232 * 120.00156 * 64.29986 * 19 9 8 21 21 C 1.38227 * 120.00423 * 179.81276 * 20 19 9 22 22 C 1.38238 * 119.99674 * 0.39266 * 21 20 19 23 23 C 1.38237 * 119.99909 * 359.86442 * 22 21 20 24 24 C 1.38229 * 119.99861 * 359.94762 * 23 22 21 25 25 C 1.47154 * 118.03238 * 309.71403 * 5 4 2 26 26 C 1.52877 * 108.60865 * 50.23037 * 25 5 4 27 27 O 1.42958 * 109.51346 * 239.87655 * 2 1 3 28 28 H 1.08995 * 109.47017 * 299.87006 * 1 2 3 29 29 H 1.08996 * 109.47559 * 59.87673 * 1 2 3 30 30 H 1.09007 * 109.46949 * 179.87299 * 1 2 3 31 31 H 1.09000 * 109.46569 * 180.13008 * 3 2 1 32 32 H 1.09003 * 109.46959 * 300.12374 * 3 2 1 33 33 H 1.08998 * 109.46996 * 60.12456 * 3 2 1 34 34 H 1.09005 * 109.68173 * 52.50276 * 4 2 1 35 35 H 1.09003 * 109.68247 * 291.95631 * 4 2 1 36 36 H 1.08997 * 109.46866 * 60.00030 * 8 6 5 37 37 H 1.09004 * 109.46662 * 299.99914 * 8 6 5 38 38 H 0.96997 * 120.00185 * 354.72930 * 14 13 11 39 39 H 1.08007 * 119.99790 * 359.97438 * 20 19 9 40 40 H 1.08004 * 120.00499 * 180.23296 * 21 20 19 41 41 H 1.08006 * 119.99774 * 179.83158 * 22 21 20 42 42 H 1.07995 * 119.99599 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.99707 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.67730 * 170.01009 * 25 5 4 45 45 H 1.09000 * 109.68113 * 290.56087 * 25 5 4 46 46 H 1.08990 * 109.58513 * 187.92273 * 26 25 5 47 47 H 1.09005 * 109.40977 * 67.83604 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0420 1.4419 0.0000 4 6 2.0421 -0.7252 1.2496 5 7 3.5013 -0.8761 1.1335 6 6 4.3194 -0.5032 2.1375 7 8 3.8555 -0.0357 3.1559 8 6 5.8107 -0.6671 1.9946 9 6 6.5023 -0.1717 3.2662 10 1 6.0772 -0.6789 4.1323 11 6 6.2962 1.3148 3.4035 12 1 6.1856 1.9284 2.5217 13 6 6.2490 1.8915 4.6550 14 7 6.5115 1.1693 5.7222 15 14 5.8123 3.6989 4.8346 16 1 5.8308 4.0721 6.2719 17 1 6.8029 4.5233 4.0968 18 1 4.4565 3.9381 4.2780 19 6 7.9775 -0.4689 3.1841 20 6 8.7521 0.1394 2.2141 21 6 10.1059 -0.1302 2.1411 22 6 10.6836 -1.0143 3.0331 23 6 9.9079 -1.6266 3.9997 24 6 8.5549 -1.3540 4.0750 25 6 4.0410 -1.4404 -0.1137 26 6 3.4313 -0.6853 -1.2949 27 8 2.0075 -0.6762 -1.1655 28 1 -0.3633 0.5118 0.8911 29 1 -0.3634 0.5157 -0.8888 30 1 -0.3633 -1.0277 -0.0023 31 1 3.1320 1.4403 -0.0023 32 1 1.6775 1.9568 -0.8889 33 1 1.6812 1.9555 0.8911 34 1 1.5759 -1.7079 1.3207 35 1 1.8030 -0.1399 2.1376 36 1 6.1599 -0.0864 1.1409 37 1 6.0472 -1.7198 1.8393 38 1 6.6632 0.2150 5.6368 39 1 8.3000 0.8273 1.5149 40 1 10.7118 0.3480 1.3857 41 1 11.7409 -1.2270 2.9744 42 1 10.3592 -2.3176 4.6962 43 1 7.9490 -1.8321 4.8305 44 1 5.1252 -1.3285 -0.1282 45 1 3.7795 -2.4964 -0.1822 46 1 3.7090 -1.1784 -2.2264 47 1 3.8029 0.3394 -1.3005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331037634.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:31 Heat of formation + Delta-G solvation = -77.679093 kcal Electronic energy + Delta-G solvation = -27731.364786 eV Core-core repulsion = 24071.076648 eV Total energy + Delta-G solvation = -3660.288138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.61073 -40.23041 -39.41510 -36.19893 -35.76236 -34.73198 -33.27708 -31.62061 -30.65825 -30.13207 -28.35713 -28.01203 -26.32587 -24.55347 -24.29602 -23.20426 -21.80050 -20.96111 -19.92915 -18.77599 -18.27363 -17.64545 -17.30723 -16.89458 -16.61041 -16.05317 -15.89173 -15.81770 -15.67747 -15.51571 -14.95542 -14.73643 -14.39866 -14.21338 -14.06846 -13.96641 -13.54589 -13.28188 -13.17506 -13.13021 -12.97356 -12.90491 -12.75617 -12.62294 -12.45117 -12.23954 -12.09640 -11.96408 -11.73472 -11.54433 -11.47743 -11.05677 -10.73590 -10.62121 -10.33851 -9.65263 -9.48606 -9.28522 -8.47004 -6.12848 0.66728 0.72740 1.44942 1.55800 1.70825 1.78594 1.95353 2.58569 2.70894 3.09223 3.35517 3.56510 3.71881 3.82341 3.95585 4.04234 4.10472 4.15210 4.25804 4.27238 4.29975 4.39403 4.44197 4.47202 4.55511 4.59128 4.65945 4.71672 4.75204 4.78841 4.83231 4.86690 4.88205 4.94181 5.06355 5.14498 5.20568 5.25745 5.38312 5.40507 5.53642 5.73694 5.81105 5.92136 6.16283 6.21829 6.28335 6.36416 6.43154 6.75807 7.36952 7.62761 8.93157 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012600 B = 0.004660 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.681197 B = 6006.713663 C = 7372.297470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.104 3.896 3 C -0.171 4.171 4 C 0.088 3.912 5 N -0.623 5.623 6 C 0.515 3.485 7 O -0.558 6.558 8 C -0.105 4.105 9 C 0.074 3.926 10 H 0.005 0.995 11 C -0.556 4.556 12 H 0.038 0.962 13 C -0.024 4.024 14 N -0.941 5.941 15 Si 1.097 2.903 16 H -0.288 1.288 17 H -0.267 1.267 18 H -0.285 1.285 19 C -0.054 4.054 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.144 4.144 23 C -0.125 4.125 24 C -0.153 4.153 25 C 0.069 3.931 26 C 0.043 3.957 27 O -0.377 6.377 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.257 0.743 39 H 0.114 0.886 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.134 0.866 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.137 0.863 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 -6.053 -16.846 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.064 3.936 3 C -0.229 4.229 4 C -0.035 4.035 5 N -0.359 5.359 6 C 0.304 3.696 7 O -0.435 6.435 8 C -0.145 4.145 9 C 0.055 3.945 10 H 0.023 0.977 11 C -0.594 4.594 12 H 0.056 0.944 13 C -0.223 4.223 14 N -0.579 5.579 15 Si 0.921 3.079 16 H -0.214 1.214 17 H -0.192 1.192 18 H -0.211 1.211 19 C -0.054 4.054 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.162 4.162 23 C -0.143 4.143 24 C -0.172 4.172 25 C -0.053 4.053 26 C -0.034 4.034 27 O -0.296 6.296 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.132 0.868 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.152 0.848 43 H 0.111 0.889 44 H 0.123 0.877 45 H 0.107 0.893 46 H 0.155 0.845 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.653 -4.661 -15.319 16.424 hybrid contribution 0.130 -1.041 -0.146 1.059 sum -3.522 -5.702 -15.466 16.855 Atomic orbital electron populations 1.21717 0.89835 1.03740 1.03626 1.21864 0.96413 0.90837 0.84493 1.22319 1.01167 0.96491 1.02901 1.22271 0.80544 1.01378 0.99278 1.48284 1.06388 1.64214 1.17024 1.21063 0.89960 0.76215 0.82348 1.90716 1.77736 1.44299 1.30729 1.21568 0.90236 1.01925 1.00802 1.17694 0.87997 0.96022 0.92785 0.97663 1.21753 1.51355 0.92471 0.93785 0.94353 1.26715 0.93652 1.09136 0.92767 1.70851 1.46854 1.07986 1.32247 0.83201 0.76800 0.71906 0.75952 1.21428 1.19207 1.21146 1.20580 0.97887 0.92966 0.94009 1.20985 0.94372 0.99529 0.99137 1.21408 0.94371 0.98396 0.99929 1.21314 1.00562 0.98300 0.96019 1.21294 0.93103 1.00622 0.99255 1.21115 0.96254 1.00095 0.99712 1.22567 1.00800 0.98962 0.82965 1.23078 0.80808 1.00548 0.98921 1.87959 1.21657 1.76819 1.43183 0.90361 0.90364 0.90877 0.93675 0.90212 0.92389 0.90305 0.90961 0.88633 0.89230 0.93236 0.86827 0.83862 0.83526 0.84778 0.88850 0.87662 0.89328 0.84507 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.85 71.98 0.64 -1.79 16 2 C 0.10 2.49 1.11 -10.69 -0.01 2.47 16 3 C -0.17 -4.43 8.10 71.98 0.58 -3.85 16 4 C 0.09 2.58 5.31 86.35 0.46 3.04 16 5 N -0.62 -19.62 2.54 -818.14 -2.08 -21.71 16 6 C 0.51 21.45 7.47 87.66 0.65 22.10 16 7 O -0.56 -29.70 14.48 -3.04 -0.04 -29.74 16 8 C -0.11 -4.14 3.31 29.85 0.10 -4.04 16 9 C 0.07 3.69 1.31 -12.29 -0.02 3.67 16 10 H 0.01 0.30 6.23 -2.39 -0.01 0.28 16 11 C -0.56 -31.10 6.40 25.60 0.16 -30.94 16 12 H 0.04 2.13 7.82 -2.91 -0.02 2.10 16 13 C -0.02 -1.45 5.45 84.65 0.46 -0.99 16 14 N -0.94 -60.43 13.63 21.45 0.29 -60.13 16 15 Si 1.10 54.36 29.91 68.60 2.05 56.41 16 16 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 19 C -0.05 -2.40 4.77 -19.87 -0.09 -2.49 16 20 C -0.12 -4.77 8.88 22.27 0.20 -4.57 16 21 C -0.12 -3.95 10.05 22.27 0.22 -3.73 16 22 C -0.14 -4.40 10.05 22.27 0.22 -4.17 16 23 C -0.12 -4.32 10.05 22.27 0.22 -4.09 16 24 C -0.15 -6.51 9.67 22.27 0.22 -6.30 16 25 C 0.07 1.52 6.51 86.21 0.56 2.08 16 26 C 0.04 0.83 6.58 71.94 0.47 1.30 16 27 O -0.38 -8.55 10.23 -148.98 -1.52 -10.07 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.04 1.33 6.11 -2.39 -0.01 1.31 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.07 2.52 7.08 -2.39 -0.02 2.51 16 36 H 0.10 3.38 7.37 -2.39 -0.02 3.36 16 37 H 0.09 3.03 8.02 -2.39 -0.02 3.01 16 38 H 0.26 16.65 6.68 -92.71 -0.62 16.03 16 39 H 0.11 4.33 7.80 -2.91 -0.02 4.30 16 40 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 41 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 42 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 43 H 0.09 4.14 7.95 -2.91 -0.02 4.11 16 44 H 0.11 2.09 6.05 -2.38 -0.01 2.08 16 45 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.05 1.11 6.25 -2.38 -0.01 1.10 16 Total: -1.00 -77.12 372.66 4.84 -72.28 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 1.09 Total: 25.23 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 5.05 Total: -32.28 kcal Atomic # 7 Polarization: -80.05 SS G_CDS: -1.79 Total: -81.84 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -1.57 Total: -39.81 kcal Atomic # 14 Polarization: 54.36 SS G_CDS: 2.05 Total: 56.41 kcal Total: -77.12 4.84 -72.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331037634.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.397 kcal (2) G-P(sol) polarization free energy of solvation -77.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds