Wall clock time and date at job start Tue Mar 31 2020 11:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.71222 * 2 1 4 4 C 1.53294 * 109.68258 * 120.54256 * 2 1 3 5 5 O 1.42956 * 109.26408 * 172.04887 * 4 2 1 6 6 C 1.42960 * 114.16808 * 297.38452 * 5 4 2 7 7 C 1.53303 * 109.21725 * 62.58737 * 6 5 4 8 8 N 1.47150 * 108.38219 * 307.69503 * 7 6 5 9 9 C 1.34783 * 120.98250 * 230.51178 * 8 7 6 10 10 O 1.21274 * 119.99983 * 175.39522 * 9 8 7 11 11 C 1.50700 * 119.99679 * 355.39882 * 9 8 7 12 12 C 1.53002 * 109.46708 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.47131 * 304.99668 * 12 11 9 14 14 C 1.50691 * 109.47190 * 65.00389 * 12 11 9 15 15 H 1.08001 * 120.00370 * 31.75906 * 14 12 11 16 16 C 1.37884 * 120.00017 * 211.76248 * 14 12 11 17 17 N 1.31516 * 119.99482 * 5.91662 * 16 14 12 18 18 Si 1.86799 * 120.00176 * 185.91532 * 16 14 12 19 19 H 1.48504 * 109.46894 * 60.00127 * 18 16 14 20 20 H 1.48496 * 109.46945 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47154 * 300.00215 * 18 16 14 22 22 C 1.50708 * 109.46688 * 185.00012 * 12 11 9 23 23 C 1.38231 * 119.99871 * 298.47330 * 22 12 11 24 24 C 1.38241 * 119.99869 * 179.78786 * 23 22 12 25 25 C 1.38234 * 119.99742 * 0.44851 * 24 23 22 26 26 C 1.38242 * 120.00108 * 359.80235 * 25 24 23 27 27 C 1.38235 * 119.99578 * 118.74814 * 22 12 11 28 28 H 1.09002 * 109.46715 * 294.02201 * 1 2 3 29 29 H 1.09004 * 109.46618 * 54.01656 * 1 2 3 30 30 H 1.08991 * 109.47406 * 174.01710 * 1 2 3 31 31 H 1.09000 * 109.47641 * 180.53980 * 3 2 1 32 32 H 1.09007 * 109.47256 * 300.53710 * 3 2 1 33 33 H 1.08999 * 109.47026 * 60.53433 * 3 2 1 34 34 H 1.09004 * 109.51385 * 52.09510 * 4 2 1 35 35 H 1.09006 * 109.50715 * 291.99633 * 4 2 1 36 36 H 1.08998 * 109.51521 * 182.50147 * 6 5 4 37 37 H 1.08989 * 109.51775 * 302.66358 * 6 5 4 38 38 H 1.09000 * 109.68085 * 67.41840 * 7 6 5 39 39 H 1.09002 * 109.67894 * 187.93484 * 7 6 5 40 40 H 1.08999 * 109.47550 * 299.99866 * 11 9 8 41 41 H 1.08998 * 109.47101 * 59.99761 * 11 9 8 42 42 H 0.97005 * 119.99516 * 179.97438 * 17 16 14 43 43 H 1.07993 * 120.00534 * 0.02562 * 23 22 12 44 44 H 1.07994 * 120.00342 * 180.27179 * 24 23 22 45 45 H 1.07992 * 120.00158 * 179.83322 * 25 24 23 46 46 H 1.07994 * 119.99809 * 180.02562 * 26 25 24 47 47 H 1.07994 * 120.00376 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0461 1.4403 0.0000 4 6 2.0463 -0.7335 1.2431 5 8 3.4636 -0.8912 1.1430 6 6 3.8869 -1.6901 0.0356 7 6 3.4659 -1.0061 -1.2702 8 7 2.0275 -0.7050 -1.1935 9 6 1.1897 -1.0633 -2.1866 10 8 -0.0035 -0.8815 -2.0685 11 6 1.7358 -1.6898 -3.4437 12 6 0.5833 -1.9990 -4.4014 13 1 -0.1556 -2.6182 -3.8928 14 6 -0.0603 -0.7108 -4.8453 15 1 0.5347 0.1855 -4.9404 16 6 -1.4090 -0.6763 -5.1298 17 7 -2.1561 -1.7347 -4.9033 18 14 -2.1751 0.8737 -5.8370 19 1 -1.5266 1.1996 -7.1326 20 1 -3.6278 0.6539 -6.0526 21 1 -1.9796 1.9995 -4.8886 22 6 1.1139 -2.7360 -5.6043 23 6 2.0457 -2.1333 -6.4284 24 6 2.5356 -2.8110 -7.5293 25 6 2.0867 -4.0876 -7.8111 26 6 1.1509 -4.6883 -6.9898 27 6 0.6643 -4.0123 -5.8865 28 1 -0.3633 0.4184 0.9387 29 1 -0.3633 0.6038 -0.8316 30 1 -0.3634 -1.0220 -0.1071 31 1 3.1360 1.4358 -0.0097 32 1 1.6771 1.9585 -0.8852 33 1 1.6927 1.9528 0.8947 34 1 1.5747 -1.7139 1.3095 35 1 1.8066 -0.1530 2.1341 36 1 4.9714 -1.7970 0.0572 37 1 3.4220 -2.6739 0.0975 38 1 4.0283 -0.0811 -1.3980 39 1 3.6578 -1.6717 -2.1117 40 1 2.4306 -0.9993 -3.9217 41 1 2.2568 -2.6137 -3.1925 42 1 -3.1050 -1.7103 -5.1032 43 1 2.3940 -1.1346 -6.2102 44 1 3.2669 -2.3419 -8.1707 45 1 2.4674 -4.6160 -8.6725 46 1 0.8005 -5.6858 -7.2097 47 1 -0.0667 -4.4816 -5.2448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331050551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:48 Heat of formation + Delta-G solvation = -41.540990 kcal Electronic energy + Delta-G solvation = -27966.098246 eV Core-core repulsion = 24307.377173 eV Total energy + Delta-G solvation = -3658.721073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.41796 -38.53169 -37.77800 -34.98406 -34.02395 -33.39326 -31.38509 -30.03477 -29.13009 -28.36134 -27.00770 -26.13691 -25.52779 -22.98614 -22.68948 -21.68666 -20.89747 -19.39193 -18.05076 -16.74095 -16.48373 -16.30265 -15.78255 -15.51493 -15.25168 -15.00430 -14.55220 -14.49437 -14.06299 -13.90466 -13.28757 -13.16949 -13.05986 -12.55009 -12.41965 -12.19276 -12.16062 -11.94698 -11.82451 -11.65665 -11.57442 -11.52638 -11.19469 -10.96646 -10.87102 -10.68421 -10.58564 -10.54267 -10.28261 -10.05819 -9.98951 -9.40291 -9.07880 -8.41831 -8.20696 -8.07232 -8.05227 -7.63965 -5.92997 -3.91881 2.25995 2.31783 3.26874 3.38053 3.41617 3.44145 3.50980 3.79308 4.50984 4.71351 4.73950 4.90894 4.96746 5.10310 5.19867 5.34404 5.38007 5.46549 5.58000 5.59533 5.64131 5.70539 5.71027 5.79942 5.82171 5.85531 5.97229 6.06558 6.09587 6.17912 6.22936 6.26124 6.38761 6.50272 6.51595 6.70603 6.80961 6.90285 7.00692 7.05529 7.10134 7.28642 7.42954 7.51799 7.87301 7.92480 7.96869 8.06211 8.38342 9.06786 9.09143 9.68707 11.16846 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011996 B = 0.005061 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.510396 B = 5531.622755 C = 7100.025870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.138 3.862 3 C -0.150 4.150 4 C 0.058 3.942 5 O -0.381 6.381 6 C 0.047 3.953 7 C 0.077 3.923 8 N -0.627 5.627 9 C 0.516 3.484 10 O -0.479 6.479 11 C -0.121 4.121 12 C 0.079 3.921 13 H 0.074 0.926 14 C -0.491 4.491 15 H 0.049 0.951 16 C 0.079 3.921 17 N -0.879 5.879 18 Si 0.883 3.117 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.024 4.024 23 C -0.116 4.116 24 C -0.131 4.131 25 C -0.155 4.155 26 C -0.128 4.128 27 C -0.120 4.120 28 H 0.036 0.964 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.259 0.741 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.856 -0.980 7.538 14.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.053 3.947 3 C -0.208 4.208 4 C -0.019 4.019 5 O -0.300 6.300 6 C -0.031 4.031 7 C -0.047 4.047 8 N -0.366 5.366 9 C 0.305 3.695 10 O -0.350 6.350 11 C -0.161 4.161 12 C 0.060 3.940 13 H 0.093 0.907 14 C -0.529 4.529 15 H 0.067 0.933 16 C -0.124 4.124 17 N -0.516 5.516 18 Si 0.712 3.288 19 H -0.205 1.205 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.025 4.025 23 C -0.134 4.134 24 C -0.150 4.150 25 C -0.174 4.174 26 C -0.146 4.146 27 C -0.138 4.138 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.130 0.870 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.067 -0.877 7.690 13.504 hybrid contribution -0.574 0.810 -0.847 1.305 sum 10.493 -0.067 6.843 12.527 Atomic orbital electron populations 1.22159 0.91256 1.04400 1.00756 1.21224 0.96208 0.91995 0.85289 1.22063 1.01403 0.95242 1.02099 1.23070 0.81233 0.99971 0.97669 1.87902 1.22219 1.71993 1.47852 1.22978 1.00321 0.93753 0.86006 1.22277 0.82578 1.00961 0.98901 1.48489 1.07533 1.60494 1.20080 1.20885 0.86666 0.78235 0.83718 1.90804 1.14923 1.51111 1.78169 1.21832 1.01026 0.99029 0.94191 1.17845 0.91336 0.96908 0.87912 0.90745 1.20609 0.93193 0.93469 1.45589 0.93324 1.24792 0.97149 0.95608 0.94879 1.69891 1.05903 1.28996 1.46792 0.86805 0.78234 0.84266 0.79530 1.20464 1.21412 1.20398 1.20786 0.91311 0.91978 0.98380 1.20944 0.98184 0.99185 0.95066 1.20979 1.00774 0.95236 0.97975 1.20801 1.00253 0.96157 1.00140 1.20993 0.98192 0.99349 0.96074 1.21103 0.99869 0.95164 0.97659 0.94546 0.89863 0.91031 0.92260 0.92180 0.92023 0.92753 0.88319 0.88105 0.92735 0.91299 0.88695 0.90700 0.91989 0.93123 0.86962 0.87662 0.87790 0.87627 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 6.92 37.16 0.26 -1.85 16 2 C 0.14 1.99 1.04 -131.25 -0.14 1.86 16 3 C -0.15 -1.96 8.54 37.15 0.32 -1.65 16 4 C 0.06 0.72 5.65 37.31 0.21 0.93 16 5 O -0.38 -4.76 10.39 -35.23 -0.37 -5.13 16 6 C 0.05 0.50 6.99 37.31 0.26 0.76 16 7 C 0.08 0.92 6.13 -3.53 -0.02 0.90 16 8 N -0.63 -9.79 2.72 -157.43 -0.43 -10.21 16 9 C 0.52 10.15 7.35 -10.98 -0.08 10.06 16 10 O -0.48 -11.38 10.55 5.56 0.06 -11.32 16 11 C -0.12 -2.29 3.36 -27.88 -0.09 -2.39 16 12 C 0.08 1.85 1.73 -92.92 -0.16 1.69 16 13 H 0.07 2.01 6.87 -51.93 -0.36 1.65 16 14 C -0.49 -13.00 6.45 -34.44 -0.22 -13.23 16 15 H 0.05 1.30 7.82 -52.49 -0.41 0.88 16 16 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 17 N -0.88 -25.55 12.81 55.43 0.71 -24.84 16 18 Si 0.88 22.03 29.54 -169.99 -5.02 17.01 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C -0.02 -0.52 4.77 -104.62 -0.50 -1.02 16 23 C -0.12 -2.29 8.86 -39.58 -0.35 -2.64 16 24 C -0.13 -2.32 10.05 -39.58 -0.40 -2.71 16 25 C -0.16 -2.66 10.05 -39.58 -0.40 -3.06 16 26 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 27 C -0.12 -2.50 9.67 -39.58 -0.38 -2.88 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.63 6.74 -51.93 -0.35 1.28 16 30 H 0.07 1.32 6.85 -51.93 -0.36 0.97 16 31 H 0.06 0.74 7.21 -51.93 -0.37 0.37 16 32 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.59 8.14 -51.94 -0.42 0.16 16 38 H 0.07 0.78 7.64 -51.93 -0.40 0.38 16 39 H 0.09 1.05 6.08 -51.93 -0.32 0.73 16 40 H 0.07 1.34 7.65 -51.93 -0.40 0.94 16 41 H 0.06 1.03 7.47 -51.93 -0.39 0.65 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.11 2.15 7.70 -52.49 -0.40 1.74 16 44 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 46 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 47 H 0.11 2.42 7.95 -52.49 -0.42 2.00 16 LS Contribution 369.83 15.07 5.57 5.57 Total: -1.00 -31.11 369.83 -9.19 -40.30 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.53 Total: 4.45 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -2.19 Total: -15.84 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.28 Total: -35.06 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.31 Total: -16.44 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.11 -9.19 -40.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331050551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.238 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds