Wall clock time and date at job start Tue Mar 31 2020 11:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.71222 * 2 1 4 4 C 1.53294 * 109.68258 * 120.54256 * 2 1 3 5 5 O 1.42956 * 109.26408 * 172.04887 * 4 2 1 6 6 C 1.42960 * 114.16808 * 297.38452 * 5 4 2 7 7 C 1.53303 * 109.21725 * 62.58737 * 6 5 4 8 8 N 1.47150 * 108.38219 * 307.69503 * 7 6 5 9 9 C 1.34783 * 120.98250 * 230.51178 * 8 7 6 10 10 O 1.21274 * 119.99983 * 175.39522 * 9 8 7 11 11 C 1.50700 * 119.99679 * 355.39882 * 9 8 7 12 12 C 1.53002 * 109.46708 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.47131 * 304.99668 * 12 11 9 14 14 C 1.50691 * 109.47190 * 65.00389 * 12 11 9 15 15 H 1.08001 * 120.00370 * 31.75906 * 14 12 11 16 16 C 1.37884 * 120.00017 * 211.76248 * 14 12 11 17 17 N 1.31516 * 119.99482 * 5.91662 * 16 14 12 18 18 Si 1.86799 * 120.00176 * 185.91532 * 16 14 12 19 19 H 1.48504 * 109.46894 * 60.00127 * 18 16 14 20 20 H 1.48496 * 109.46945 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47154 * 300.00215 * 18 16 14 22 22 C 1.50708 * 109.46688 * 185.00012 * 12 11 9 23 23 C 1.38231 * 119.99871 * 298.47330 * 22 12 11 24 24 C 1.38241 * 119.99869 * 179.78786 * 23 22 12 25 25 C 1.38234 * 119.99742 * 0.44851 * 24 23 22 26 26 C 1.38242 * 120.00108 * 359.80235 * 25 24 23 27 27 C 1.38235 * 119.99578 * 118.74814 * 22 12 11 28 28 H 1.09002 * 109.46715 * 294.02201 * 1 2 3 29 29 H 1.09004 * 109.46618 * 54.01656 * 1 2 3 30 30 H 1.08991 * 109.47406 * 174.01710 * 1 2 3 31 31 H 1.09000 * 109.47641 * 180.53980 * 3 2 1 32 32 H 1.09007 * 109.47256 * 300.53710 * 3 2 1 33 33 H 1.08999 * 109.47026 * 60.53433 * 3 2 1 34 34 H 1.09004 * 109.51385 * 52.09510 * 4 2 1 35 35 H 1.09006 * 109.50715 * 291.99633 * 4 2 1 36 36 H 1.08998 * 109.51521 * 182.50147 * 6 5 4 37 37 H 1.08989 * 109.51775 * 302.66358 * 6 5 4 38 38 H 1.09000 * 109.68085 * 67.41840 * 7 6 5 39 39 H 1.09002 * 109.67894 * 187.93484 * 7 6 5 40 40 H 1.08999 * 109.47550 * 299.99866 * 11 9 8 41 41 H 1.08998 * 109.47101 * 59.99761 * 11 9 8 42 42 H 0.97005 * 119.99516 * 179.97438 * 17 16 14 43 43 H 1.07993 * 120.00534 * 0.02562 * 23 22 12 44 44 H 1.07994 * 120.00342 * 180.27179 * 24 23 22 45 45 H 1.07992 * 120.00158 * 179.83322 * 25 24 23 46 46 H 1.07994 * 119.99809 * 180.02562 * 26 25 24 47 47 H 1.07994 * 120.00376 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0461 1.4403 0.0000 4 6 2.0463 -0.7335 1.2431 5 8 3.4636 -0.8912 1.1430 6 6 3.8869 -1.6901 0.0356 7 6 3.4659 -1.0061 -1.2702 8 7 2.0275 -0.7050 -1.1935 9 6 1.1897 -1.0633 -2.1866 10 8 -0.0035 -0.8815 -2.0685 11 6 1.7358 -1.6898 -3.4437 12 6 0.5833 -1.9990 -4.4014 13 1 -0.1556 -2.6182 -3.8928 14 6 -0.0603 -0.7108 -4.8453 15 1 0.5347 0.1855 -4.9404 16 6 -1.4090 -0.6763 -5.1298 17 7 -2.1561 -1.7347 -4.9033 18 14 -2.1751 0.8737 -5.8370 19 1 -1.5266 1.1996 -7.1326 20 1 -3.6278 0.6539 -6.0526 21 1 -1.9796 1.9995 -4.8886 22 6 1.1139 -2.7360 -5.6043 23 6 2.0457 -2.1333 -6.4284 24 6 2.5356 -2.8110 -7.5293 25 6 2.0867 -4.0876 -7.8111 26 6 1.1509 -4.6883 -6.9898 27 6 0.6643 -4.0123 -5.8865 28 1 -0.3633 0.4184 0.9387 29 1 -0.3633 0.6038 -0.8316 30 1 -0.3634 -1.0220 -0.1071 31 1 3.1360 1.4358 -0.0097 32 1 1.6771 1.9585 -0.8852 33 1 1.6927 1.9528 0.8947 34 1 1.5747 -1.7139 1.3095 35 1 1.8066 -0.1530 2.1341 36 1 4.9714 -1.7970 0.0572 37 1 3.4220 -2.6739 0.0975 38 1 4.0283 -0.0811 -1.3980 39 1 3.6578 -1.6717 -2.1117 40 1 2.4306 -0.9993 -3.9217 41 1 2.2568 -2.6137 -3.1925 42 1 -3.1050 -1.7103 -5.1032 43 1 2.3940 -1.1346 -6.2102 44 1 3.2669 -2.3419 -8.1707 45 1 2.4674 -4.6160 -8.6725 46 1 0.8005 -5.6858 -7.2097 47 1 -0.0667 -4.4816 -5.2448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331050551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:47 Heat of formation + Delta-G solvation = -59.181451 kcal Electronic energy + Delta-G solvation = -27966.863194 eV Core-core repulsion = 24307.377173 eV Total energy + Delta-G solvation = -3659.486020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.67753 -40.00706 -39.10808 -36.30203 -35.61647 -34.72090 -33.26639 -31.51295 -30.46743 -29.63503 -28.22615 -27.46549 -27.15439 -24.65727 -23.74424 -23.17400 -22.25189 -20.97241 -19.38225 -18.47375 -17.97669 -17.48414 -17.13655 -16.67667 -16.56211 -16.42052 -16.01094 -15.87757 -15.56069 -15.43062 -14.78122 -14.56420 -14.27600 -14.00561 -13.97260 -13.65990 -13.45982 -13.44444 -13.25034 -13.03596 -12.89492 -12.83515 -12.69027 -12.53704 -12.45335 -12.27768 -12.11923 -11.84686 -11.69428 -11.58544 -11.23875 -11.06752 -10.96823 -10.47715 -9.79731 -9.55341 -9.31681 -9.19954 -8.03621 -6.05566 0.76610 0.82775 1.35017 1.36939 1.41792 1.97963 2.04755 2.45013 2.87987 3.17173 3.34999 3.64699 3.79812 3.94457 4.08259 4.15926 4.23853 4.26914 4.33167 4.35568 4.40004 4.50910 4.53411 4.61945 4.64742 4.70570 4.71894 4.76431 4.86822 4.88962 4.92662 4.94263 4.99182 5.00551 5.21034 5.29736 5.36605 5.44050 5.51184 5.66102 5.77436 5.81300 5.82978 5.95273 6.12297 6.17681 6.41025 6.45709 6.61670 7.01526 7.55573 7.60977 9.05492 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011996 B = 0.005061 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.510396 B = 5531.622755 C = 7100.025870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.131 3.869 3 C -0.141 4.141 4 C 0.066 3.934 5 O -0.384 6.384 6 C 0.048 3.952 7 C 0.069 3.931 8 N -0.622 5.622 9 C 0.509 3.491 10 O -0.534 6.534 11 C -0.112 4.112 12 C 0.083 3.917 13 H 0.026 0.974 14 C -0.483 4.483 15 H 0.042 0.958 16 C 0.025 3.975 17 N -0.914 5.914 18 Si 0.931 3.069 19 H -0.268 1.268 20 H -0.289 1.289 21 H -0.281 1.281 22 C -0.048 4.048 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.147 4.147 26 C -0.128 4.128 27 C -0.144 4.144 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.123 0.877 36 H 0.136 0.864 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.253 0.747 43 H 0.115 0.885 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.131 0.869 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.307 -0.844 7.050 16.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.046 3.954 3 C -0.200 4.200 4 C -0.012 4.012 5 O -0.302 6.302 6 C -0.029 4.029 7 C -0.053 4.053 8 N -0.360 5.360 9 C 0.299 3.701 10 O -0.409 6.409 11 C -0.152 4.152 12 C 0.064 3.936 13 H 0.044 0.956 14 C -0.521 4.521 15 H 0.061 0.939 16 C -0.174 4.174 17 N -0.554 5.554 18 Si 0.758 3.242 19 H -0.193 1.193 20 H -0.215 1.215 21 H -0.207 1.207 22 C -0.049 4.049 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.165 4.165 26 C -0.146 4.146 27 C -0.163 4.163 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.141 0.859 36 H 0.153 0.847 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.123 0.877 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.133 0.867 44 H 0.159 0.841 45 H 0.162 0.838 46 H 0.149 0.851 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.585 -0.728 7.215 16.288 hybrid contribution -1.531 0.712 -0.687 1.823 sum 13.054 -0.016 6.528 14.595 Atomic orbital electron populations 1.21919 0.93223 1.01875 1.00459 1.21409 0.94778 0.93338 0.85855 1.21992 1.01968 0.93878 1.02119 1.23016 0.81384 0.99669 0.97114 1.87908 1.21726 1.72227 1.48387 1.23144 1.02280 0.93033 0.84486 1.22602 0.80079 1.02162 1.00457 1.48474 1.08847 1.59313 1.19355 1.21033 0.86390 0.78059 0.84645 1.90807 1.17189 1.53485 1.79408 1.21678 0.99671 1.00464 0.93360 1.17602 0.91769 0.94901 0.89295 0.95585 1.20881 0.93121 0.94478 1.43579 0.93948 1.25446 0.98048 0.97803 0.96065 1.70043 1.05576 1.30669 1.49094 0.86040 0.77525 0.81461 0.79147 1.19345 1.21509 1.20726 1.20593 0.93236 0.92753 0.98280 1.21027 0.98153 0.99507 0.95807 1.21374 1.00543 0.95299 0.97089 1.21268 0.98758 0.95965 1.00462 1.21286 0.98004 1.00345 0.94939 1.21098 1.00438 0.95637 0.99079 0.91671 0.93837 0.93990 0.91052 0.94463 0.89803 0.93476 0.85869 0.84665 0.93004 0.89863 0.87697 0.89188 0.89609 0.93850 0.86727 0.84100 0.83837 0.85083 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 6.92 71.98 0.50 -3.53 16 2 C 0.13 3.71 1.04 3.55 0.00 3.72 16 3 C -0.14 -3.51 8.54 71.98 0.61 -2.89 16 4 C 0.07 1.51 5.65 72.08 0.41 1.91 16 5 O -0.38 -8.42 10.39 -148.98 -1.55 -9.97 16 6 C 0.05 0.87 6.99 72.08 0.50 1.38 16 7 C 0.07 1.51 6.13 86.36 0.53 2.04 16 8 N -0.62 -19.34 2.72 -770.38 -2.09 -21.43 16 9 C 0.51 20.85 7.35 87.66 0.64 21.50 16 10 O -0.53 -27.25 10.55 -3.01 -0.03 -27.28 16 11 C -0.11 -4.34 3.36 29.85 0.10 -4.24 16 12 C 0.08 4.10 1.73 -12.29 -0.02 4.08 16 13 H 0.03 1.52 6.87 -2.39 -0.02 1.50 16 14 C -0.48 -26.63 6.45 25.60 0.17 -26.47 16 15 H 0.04 2.33 7.82 -2.91 -0.02 2.31 16 16 C 0.03 1.47 5.45 84.66 0.46 1.93 16 17 N -0.91 -56.44 12.81 21.45 0.27 -56.17 16 18 Si 0.93 46.78 29.54 68.60 2.03 48.81 16 19 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 20 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 21 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 22 C -0.05 -2.12 4.77 -19.86 -0.09 -2.22 16 23 C -0.13 -4.86 8.86 22.27 0.20 -4.67 16 24 C -0.13 -3.97 10.05 22.27 0.22 -3.75 16 25 C -0.15 -4.46 10.05 22.27 0.22 -4.24 16 26 C -0.13 -4.42 10.05 22.27 0.22 -4.20 16 27 C -0.14 -6.15 9.67 22.27 0.22 -5.94 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.04 1.83 6.74 -2.39 -0.02 1.81 16 30 H 0.04 1.66 6.85 -2.39 -0.02 1.64 16 31 H 0.07 1.60 7.21 -2.39 -0.02 1.58 16 32 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.12 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 1.63 7.64 -2.39 -0.02 1.61 16 39 H 0.10 2.08 6.08 -2.39 -0.01 2.06 16 40 H 0.09 3.19 7.65 -2.39 -0.02 3.17 16 41 H 0.09 2.86 7.47 -2.39 -0.02 2.85 16 42 H 0.25 15.16 8.31 -92.70 -0.77 14.39 16 43 H 0.11 4.24 7.70 -2.91 -0.02 4.22 16 44 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 45 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 46 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 47 H 0.09 4.21 7.95 -2.91 -0.02 4.19 16 Total: -1.00 -73.21 369.83 4.47 -68.74 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.94 Total: 22.88 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 4.90 Total: -25.58 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -1.82 Total: -77.60 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -1.58 Total: -37.25 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -73.21 4.47 -68.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331050551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.557 kcal (2) G-P(sol) polarization free energy of solvation -73.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds