Wall clock time and date at job start Tue Mar 31 2020 13:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47433 * 2 1 4 4 O 1.42904 * 109.47229 * 240.00215 * 2 1 3 5 5 C 1.53000 * 109.47290 * 120.00361 * 2 1 3 6 6 C 1.53488 * 114.20936 * 65.38747 * 5 2 1 7 7 N 1.47066 * 87.98722 * 139.65867 * 6 5 2 8 8 C 1.34782 * 136.05809 * 152.84384 * 7 6 5 9 9 O 1.21279 * 120.00027 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99916 * 179.97438 * 8 7 6 11 11 C 1.52995 * 109.46952 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47159 * 54.01191 * 11 10 8 13 13 C 1.50697 * 109.46986 * 294.00855 * 11 10 8 14 14 H 1.07993 * 120.00563 * 334.57962 * 13 11 10 15 15 C 1.37878 * 119.99842 * 154.57986 * 13 11 10 16 16 N 1.31514 * 120.00303 * 5.85244 * 15 13 11 17 17 Si 1.86806 * 120.00045 * 185.86069 * 15 13 11 18 18 H 1.48506 * 109.46755 * 269.99488 * 17 15 13 19 19 H 1.48499 * 109.47253 * 29.99606 * 17 15 13 20 20 H 1.48501 * 109.47075 * 149.99956 * 17 15 13 21 21 C 1.50704 * 109.46867 * 174.01325 * 11 10 8 22 22 C 1.38233 * 120.00088 * 64.78124 * 21 11 10 23 23 C 1.38237 * 119.99824 * 179.80929 * 22 21 11 24 24 C 1.38238 * 120.00237 * 0.39874 * 23 22 21 25 25 C 1.38242 * 119.99536 * 359.85553 * 24 23 22 26 26 C 1.38225 * 120.00171 * 359.95666 * 25 24 23 27 27 C 1.47062 * 87.88343 * 333.09969 * 7 6 5 28 28 H 1.09003 * 109.47000 * 299.99840 * 1 2 3 29 29 H 1.09003 * 109.47511 * 59.99880 * 1 2 3 30 30 H 1.09003 * 109.47417 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47780 * 184.83283 * 3 2 1 32 32 H 1.09004 * 109.46922 * 304.83784 * 3 2 1 33 33 H 1.08997 * 109.47074 * 64.83332 * 3 2 1 34 34 H 0.96700 * 113.99732 * 299.99866 * 4 2 1 35 35 H 1.09008 * 113.40992 * 292.18458 * 5 2 1 36 36 H 1.09002 * 113.47144 * 24.87735 * 6 5 2 37 37 H 1.09004 * 113.47181 * 254.43678 * 6 5 2 38 38 H 1.09004 * 109.46875 * 59.99986 * 10 8 7 39 39 H 1.09001 * 109.47061 * 300.00589 * 10 8 7 40 40 H 0.97001 * 119.99637 * 354.95194 * 16 15 13 41 41 H 1.08003 * 119.99980 * 0.02562 * 22 21 11 42 42 H 1.07997 * 119.99710 * 180.23556 * 23 22 21 43 43 H 1.07994 * 119.99935 * 179.83590 * 24 23 22 44 44 H 1.08002 * 119.99523 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.00089 * 180.02562 * 26 25 24 46 46 H 1.09000 * 113.46699 * 141.67902 * 27 7 6 47 47 H 1.08997 * 113.46986 * 272.11989 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 1.7001 -2.2174 1.2950 7 7 3.0480 -2.4541 1.8334 8 6 3.6296 -3.3804 2.6210 9 8 2.9743 -4.3028 3.0578 10 6 5.0943 -3.2706 2.9580 11 6 5.4993 -4.4392 3.8587 12 1 5.2180 -5.3788 3.3833 13 6 4.7963 -4.3174 5.1861 14 1 4.4746 -3.3492 5.5400 15 6 4.5638 -5.4423 5.9487 16 7 5.0553 -6.6034 5.5749 17 14 3.5505 -5.3171 7.5131 18 1 4.4465 -5.0272 8.6613 19 1 2.5561 -4.2231 7.3725 20 1 2.8434 -6.6015 7.7489 21 6 6.9904 -4.4127 4.0758 22 6 7.5712 -3.3589 4.7562 23 6 8.9385 -3.3366 4.9587 24 6 9.7260 -4.3640 4.4736 25 6 9.1457 -5.4152 3.7885 26 6 7.7781 -5.4394 3.5894 27 6 3.4806 -1.2318 1.1394 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1265 1.4437 -0.0866 32 1 1.6076 1.9807 -0.8435 33 1 1.7491 1.9307 0.9301 34 1 1.7210 -1.5952 -1.2329 35 1 1.8282 -0.1863 2.1750 36 1 1.5427 -2.6572 0.3101 37 1 0.9031 -2.4603 1.9979 38 1 5.2781 -2.3302 3.4776 39 1 5.6815 -3.2992 2.0401 40 1 5.5186 -6.6834 4.7264 41 1 6.9564 -2.5547 5.1327 42 1 9.3918 -2.5152 5.4936 43 1 10.7944 -4.3452 4.6295 44 1 9.7610 -6.2176 3.4091 45 1 7.3247 -6.2609 3.0546 46 1 4.1947 -0.6382 1.7103 47 1 3.8023 -1.4063 0.1127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332450482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:45 Heat of formation + Delta-G solvation = -33.909401 kcal Electronic energy + Delta-G solvation = -26862.701166 eV Core-core repulsion = 23204.311024 eV Total energy + Delta-G solvation = -3658.390142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.71948 -38.76682 -38.00657 -36.40207 -34.23004 -32.64664 -31.35714 -30.10397 -29.66543 -28.22888 -27.88845 -25.78724 -24.84672 -23.20186 -22.36676 -21.63501 -20.27337 -19.82328 -18.60949 -17.37607 -16.82107 -16.53106 -15.82983 -15.66708 -15.24680 -14.98928 -14.36153 -14.24301 -13.95077 -13.65587 -13.56273 -13.24842 -12.92213 -12.71084 -12.57251 -12.53388 -12.37837 -12.31929 -12.23208 -11.96683 -11.87771 -11.78048 -11.46431 -11.21796 -10.92504 -10.70688 -10.48078 -10.41073 -10.22820 -10.13258 -10.04296 -9.68783 -9.05478 -8.62814 -8.35800 -8.23402 -8.12714 -7.62672 -6.22959 -3.90958 2.20274 2.25597 3.15072 3.39057 3.49206 3.56137 3.69481 3.87657 4.12122 4.53563 4.61279 4.62941 4.67420 4.83354 4.92788 5.08378 5.25676 5.33458 5.36496 5.47381 5.51357 5.53079 5.58214 5.60566 5.64302 5.68617 5.69399 5.77244 5.83635 5.92420 5.99241 6.04913 6.11098 6.15504 6.24190 6.32565 6.42647 6.69906 6.80120 6.93995 7.20320 7.23369 7.37462 7.38968 7.73073 7.86564 8.15112 8.22574 8.51361 8.92062 8.98501 9.78079 11.17318 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.003748 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.361403 B = 7468.938071 C = 8857.158359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.139 3.861 3 C -0.137 4.137 4 O -0.557 6.557 5 C -0.155 4.155 6 C 0.107 3.893 7 N -0.659 5.659 8 C 0.544 3.456 9 O -0.497 6.497 10 C -0.107 4.107 11 C 0.072 3.928 12 H 0.048 0.952 13 C -0.567 4.567 14 H 0.045 0.955 15 C 0.030 3.970 16 N -0.907 5.907 17 Si 1.066 2.934 18 H -0.291 1.291 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.030 4.030 22 C -0.107 4.107 23 C -0.130 4.130 24 C -0.152 4.152 25 C -0.124 4.124 26 C -0.129 4.129 27 C 0.110 3.890 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.375 0.625 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.270 0.730 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.073 0.927 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.035 14.384 -11.668 18.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.098 3.902 3 C -0.194 4.194 4 O -0.364 6.364 5 C -0.175 4.175 6 C -0.017 4.017 7 N -0.399 5.399 8 C 0.335 3.665 9 O -0.369 6.369 10 C -0.147 4.147 11 C 0.053 3.947 12 H 0.066 0.934 13 C -0.605 4.605 14 H 0.063 0.937 15 C -0.175 4.175 16 N -0.542 5.542 17 Si 0.896 3.104 18 H -0.218 1.218 19 H -0.217 1.217 20 H -0.211 1.211 21 C -0.031 4.031 22 C -0.125 4.125 23 C -0.148 4.148 24 C -0.170 4.170 25 C -0.143 4.143 26 C -0.147 4.147 27 C -0.014 4.014 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.224 0.776 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.092 0.908 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.555 13.344 -10.047 17.077 hybrid contribution 0.317 0.309 -1.038 1.128 sum -3.238 13.652 -11.085 17.881 Atomic orbital electron populations 1.22461 0.95413 1.02766 1.02856 1.21001 0.92646 0.92784 0.83768 1.21718 1.02265 0.93095 1.02345 1.86559 1.77212 1.29098 1.43578 1.23731 0.97760 0.96007 0.99962 1.22770 0.87956 0.92422 0.98504 1.49829 1.12039 1.27651 1.50419 1.20563 0.90028 0.79582 0.76344 1.90756 1.64694 1.31302 1.50108 1.21604 0.90461 1.02624 1.00020 1.17875 0.87090 0.93768 0.95972 0.93391 1.21550 1.39464 0.95515 1.03926 0.93666 1.25595 0.96207 0.92613 1.03118 1.70722 1.34748 1.26107 1.22649 0.83590 0.76165 0.75589 0.75076 1.21766 1.21700 1.21083 1.20788 0.97518 0.92220 0.92552 1.20911 0.93651 0.99156 0.98765 1.21009 0.94376 0.98578 1.00820 1.20824 0.98691 0.95824 1.01702 1.20960 0.95099 0.98047 1.00154 1.21059 0.93273 0.99076 1.01313 1.22829 0.96090 0.84654 0.97815 0.91369 0.91728 0.92088 0.91586 0.91936 0.91073 0.77633 0.87200 0.91024 0.90607 0.90325 0.91700 0.91813 0.86754 0.87442 0.87571 0.87448 0.87207 0.90827 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 8.68 37.15 0.32 -0.89 16 2 C 0.14 1.10 1.00 -90.62 -0.09 1.01 16 3 C -0.14 -0.99 8.83 37.16 0.33 -0.66 16 4 O -0.56 -4.89 11.64 -35.23 -0.41 -5.30 16 5 C -0.16 -1.49 3.35 -90.24 -0.30 -1.79 16 6 C 0.11 1.30 7.40 -8.52 -0.06 1.24 16 7 N -0.66 -10.45 3.69 -185.41 -0.68 -11.13 16 8 C 0.54 11.46 7.83 -10.98 -0.09 11.37 16 9 O -0.50 -12.97 15.79 5.56 0.09 -12.88 16 10 C -0.11 -2.17 4.77 -27.89 -0.13 -2.31 16 11 C 0.07 1.77 1.24 -92.93 -0.12 1.65 16 12 H 0.05 1.32 6.45 -51.93 -0.33 0.99 16 13 C -0.57 -15.69 6.39 -34.44 -0.22 -15.91 16 14 H 0.05 1.26 7.82 -52.49 -0.41 0.85 16 15 C 0.03 0.88 5.45 -17.82 -0.10 0.78 16 16 N -0.91 -27.98 13.63 55.43 0.76 -27.22 16 17 Si 1.07 26.67 29.91 -169.99 -5.08 21.58 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 C -0.03 -0.68 4.63 -104.62 -0.48 -1.16 16 22 C -0.11 -2.22 8.89 -39.58 -0.35 -2.57 16 23 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 24 C -0.15 -2.69 10.05 -39.58 -0.40 -3.09 16 25 C -0.12 -2.33 10.05 -39.58 -0.40 -2.73 16 26 C -0.13 -2.75 9.34 -39.58 -0.37 -3.12 16 27 C 0.11 1.26 7.84 -8.65 -0.07 1.19 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.38 2.51 7.26 45.56 0.33 2.84 16 35 H 0.11 1.06 8.14 -51.92 -0.42 0.63 16 36 H 0.07 0.72 6.46 -51.93 -0.34 0.38 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.51 7.90 -51.93 -0.41 1.10 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.27 8.25 6.32 -40.82 -0.26 7.99 16 41 H 0.11 2.32 7.82 -52.48 -0.41 1.91 16 42 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 43 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 44 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 45 H 0.11 2.31 7.95 -52.49 -0.42 1.89 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.09 0.96 7.07 -51.93 -0.37 0.59 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -34.86 381.90 -9.38 -44.24 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.88 Total: 4.73 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -2.92 Total: -19.77 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.07 Total: -38.36 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.32 Total: -18.18 kcal Atomic # 14 Polarization: 26.67 SS G_CDS: -5.08 Total: 21.58 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.86 -9.38 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332450482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.329 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds