Wall clock time and date at job start Tue Mar 31 2020 13:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47433 * 2 1 4 4 O 1.42904 * 109.47229 * 240.00215 * 2 1 3 5 5 C 1.53000 * 109.47290 * 120.00361 * 2 1 3 6 6 C 1.53488 * 114.20936 * 65.38747 * 5 2 1 7 7 N 1.47066 * 87.98722 * 139.65867 * 6 5 2 8 8 C 1.34782 * 136.05809 * 152.84384 * 7 6 5 9 9 O 1.21279 * 120.00027 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99916 * 179.97438 * 8 7 6 11 11 C 1.52995 * 109.46952 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47159 * 54.01191 * 11 10 8 13 13 C 1.50697 * 109.46986 * 294.00855 * 11 10 8 14 14 H 1.07993 * 120.00563 * 334.57962 * 13 11 10 15 15 C 1.37878 * 119.99842 * 154.57986 * 13 11 10 16 16 N 1.31514 * 120.00303 * 5.85244 * 15 13 11 17 17 Si 1.86806 * 120.00045 * 185.86069 * 15 13 11 18 18 H 1.48506 * 109.46755 * 269.99488 * 17 15 13 19 19 H 1.48499 * 109.47253 * 29.99606 * 17 15 13 20 20 H 1.48501 * 109.47075 * 149.99956 * 17 15 13 21 21 C 1.50704 * 109.46867 * 174.01325 * 11 10 8 22 22 C 1.38233 * 120.00088 * 64.78124 * 21 11 10 23 23 C 1.38237 * 119.99824 * 179.80929 * 22 21 11 24 24 C 1.38238 * 120.00237 * 0.39874 * 23 22 21 25 25 C 1.38242 * 119.99536 * 359.85553 * 24 23 22 26 26 C 1.38225 * 120.00171 * 359.95666 * 25 24 23 27 27 C 1.47062 * 87.88343 * 333.09969 * 7 6 5 28 28 H 1.09003 * 109.47000 * 299.99840 * 1 2 3 29 29 H 1.09003 * 109.47511 * 59.99880 * 1 2 3 30 30 H 1.09003 * 109.47417 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47780 * 184.83283 * 3 2 1 32 32 H 1.09004 * 109.46922 * 304.83784 * 3 2 1 33 33 H 1.08997 * 109.47074 * 64.83332 * 3 2 1 34 34 H 0.96700 * 113.99732 * 299.99866 * 4 2 1 35 35 H 1.09008 * 113.40992 * 292.18458 * 5 2 1 36 36 H 1.09002 * 113.47144 * 24.87735 * 6 5 2 37 37 H 1.09004 * 113.47181 * 254.43678 * 6 5 2 38 38 H 1.09004 * 109.46875 * 59.99986 * 10 8 7 39 39 H 1.09001 * 109.47061 * 300.00589 * 10 8 7 40 40 H 0.97001 * 119.99637 * 354.95194 * 16 15 13 41 41 H 1.08003 * 119.99980 * 0.02562 * 22 21 11 42 42 H 1.07997 * 119.99710 * 180.23556 * 23 22 21 43 43 H 1.07994 * 119.99935 * 179.83590 * 24 23 22 44 44 H 1.08002 * 119.99523 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.00089 * 180.02562 * 26 25 24 46 46 H 1.09000 * 113.46699 * 141.67902 * 27 7 6 47 47 H 1.08997 * 113.46986 * 272.11989 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 1.7001 -2.2174 1.2950 7 7 3.0480 -2.4541 1.8334 8 6 3.6296 -3.3804 2.6210 9 8 2.9743 -4.3028 3.0578 10 6 5.0943 -3.2706 2.9580 11 6 5.4993 -4.4392 3.8587 12 1 5.2180 -5.3788 3.3833 13 6 4.7963 -4.3174 5.1861 14 1 4.4746 -3.3492 5.5400 15 6 4.5638 -5.4423 5.9487 16 7 5.0553 -6.6034 5.5749 17 14 3.5505 -5.3171 7.5131 18 1 4.4465 -5.0272 8.6613 19 1 2.5561 -4.2231 7.3725 20 1 2.8434 -6.6015 7.7489 21 6 6.9904 -4.4127 4.0758 22 6 7.5712 -3.3589 4.7562 23 6 8.9385 -3.3366 4.9587 24 6 9.7260 -4.3640 4.4736 25 6 9.1457 -5.4152 3.7885 26 6 7.7781 -5.4394 3.5894 27 6 3.4806 -1.2318 1.1394 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1265 1.4437 -0.0866 32 1 1.6076 1.9807 -0.8435 33 1 1.7491 1.9307 0.9301 34 1 1.7210 -1.5952 -1.2329 35 1 1.8282 -0.1863 2.1750 36 1 1.5427 -2.6572 0.3101 37 1 0.9031 -2.4603 1.9979 38 1 5.2781 -2.3302 3.4776 39 1 5.6815 -3.2992 2.0401 40 1 5.5186 -6.6834 4.7264 41 1 6.9564 -2.5547 5.1327 42 1 9.3918 -2.5152 5.4936 43 1 10.7944 -4.3452 4.6295 44 1 9.7610 -6.2176 3.4091 45 1 7.3247 -6.2609 3.0546 46 1 4.1947 -0.6382 1.7103 47 1 3.8023 -1.4063 0.1127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332450482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:44 Heat of formation + Delta-G solvation = -56.564661 kcal Electronic energy + Delta-G solvation = -26863.683572 eV Core-core repulsion = 23204.311024 eV Total energy + Delta-G solvation = -3659.372548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.79090 -40.30744 -39.41485 -37.45668 -36.10040 -33.44310 -33.23814 -31.63485 -31.11163 -29.60640 -28.52009 -27.05025 -26.43287 -24.81450 -23.56756 -23.16004 -21.65616 -20.92404 -19.91955 -18.83358 -18.29738 -17.93243 -17.26308 -16.76739 -16.54789 -16.14018 -15.74666 -15.68933 -15.58386 -15.35256 -14.64685 -14.47366 -14.26173 -14.07687 -13.95486 -13.81413 -13.50086 -13.30574 -13.18693 -13.14368 -12.94892 -12.87983 -12.68966 -12.63498 -12.50293 -12.11362 -12.00649 -11.98876 -11.74441 -11.55566 -11.31871 -11.03563 -10.71918 -10.60694 -10.35424 -9.66353 -9.62644 -9.29857 -8.48424 -6.14839 0.65726 0.71570 1.44742 1.57047 1.70715 1.76317 1.89844 2.58156 3.08166 3.11497 3.33288 3.38230 3.66612 3.80126 3.99405 4.06005 4.10046 4.22834 4.25348 4.26082 4.37179 4.42057 4.42405 4.46415 4.53234 4.57407 4.62529 4.74275 4.81563 4.82615 4.88978 4.95251 4.99881 5.10324 5.13424 5.19669 5.22441 5.34162 5.38257 5.39692 5.42489 5.72379 5.79514 5.91648 6.20557 6.26968 6.36622 6.74028 6.75338 6.81501 7.34983 7.60689 8.91687 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.003748 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.361403 B = 7468.938071 C = 8857.158359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.145 3.855 3 C -0.139 4.139 4 O -0.568 6.568 5 C -0.131 4.131 6 C 0.098 3.902 7 N -0.663 5.663 8 C 0.538 3.462 9 O -0.566 6.566 10 C -0.099 4.099 11 C 0.075 3.925 12 H 0.002 0.998 13 C -0.557 4.557 14 H 0.037 0.963 15 C -0.027 4.027 16 N -0.941 5.941 17 Si 1.103 2.897 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.290 1.290 21 C -0.054 4.054 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.143 4.143 25 C -0.125 4.125 26 C -0.153 4.153 27 C 0.108 3.892 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.383 0.617 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.258 0.742 41 H 0.112 0.888 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.136 0.864 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.701 17.212 -12.080 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.104 3.896 3 C -0.196 4.196 4 O -0.376 6.376 5 C -0.151 4.151 6 C -0.024 4.024 7 N -0.401 5.401 8 C 0.329 3.671 9 O -0.443 6.443 10 C -0.139 4.139 11 C 0.056 3.944 12 H 0.021 0.979 13 C -0.595 4.595 14 H 0.055 0.945 15 C -0.225 4.225 16 N -0.580 5.580 17 Si 0.928 3.072 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.216 1.216 21 C -0.055 4.055 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.161 4.161 25 C -0.143 4.143 26 C -0.171 4.171 27 C -0.014 4.014 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.233 0.767 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.131 0.869 42 H 0.162 0.838 43 H 0.166 0.834 44 H 0.154 0.846 45 H 0.112 0.888 46 H 0.101 0.899 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.217 16.253 -10.510 19.482 hybrid contribution -0.059 -0.466 -1.066 1.164 sum -2.276 15.788 -11.576 19.709 Atomic orbital electron populations 1.22448 0.94379 1.03027 1.03503 1.21010 0.93334 0.92843 0.82389 1.21763 1.02020 0.92500 1.03306 1.86554 1.77484 1.29872 1.43738 1.23624 0.95843 0.94273 1.01332 1.23117 0.85738 0.94566 0.99024 1.49796 1.14141 1.27258 1.48877 1.20603 0.90108 0.79629 0.76774 1.90717 1.65968 1.34232 1.53363 1.21459 0.90849 1.01318 1.00278 1.17685 0.88717 0.93198 0.94841 0.97946 1.21783 1.38397 0.94623 1.04704 0.94502 1.26801 0.97075 0.92625 1.06021 1.70813 1.37224 1.27097 1.22818 0.83111 0.75508 0.75545 0.73046 1.19602 1.20707 1.21570 1.20568 0.96254 0.93933 0.94739 1.20994 0.95228 0.98704 0.99160 1.21412 0.93162 0.99681 0.99916 1.21320 1.00755 0.94429 0.99605 1.21304 0.93953 0.99326 0.99680 1.21116 0.94926 0.98610 1.02444 1.23126 0.97696 0.82536 0.98037 0.90697 0.91148 0.92084 0.92000 0.91447 0.89817 0.76711 0.86777 0.88610 0.91999 0.89030 0.89617 0.93111 0.86949 0.83824 0.83400 0.84625 0.88765 0.89882 0.87878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 8.68 71.98 0.62 -1.35 16 2 C 0.15 1.93 1.00 -10.80 -0.01 1.92 16 3 C -0.14 -1.62 8.83 71.98 0.64 -0.98 16 4 O -0.57 -8.57 11.64 -148.98 -1.73 -10.31 16 5 C -0.13 -2.26 3.35 -10.55 -0.04 -2.30 16 6 C 0.10 2.31 7.40 83.17 0.62 2.93 16 7 N -0.66 -20.96 3.69 -858.91 -3.17 -24.14 16 8 C 0.54 23.51 7.83 87.66 0.69 24.19 16 9 O -0.57 -31.33 15.79 -3.03 -0.05 -31.38 16 10 C -0.10 -4.14 4.77 29.85 0.14 -4.00 16 11 C 0.07 3.85 1.24 -12.29 -0.02 3.84 16 12 H 0.00 0.14 6.45 -2.39 -0.02 0.12 16 13 C -0.56 -32.11 6.39 25.60 0.16 -31.94 16 14 H 0.04 2.12 7.82 -2.91 -0.02 2.10 16 15 C -0.03 -1.64 5.45 84.65 0.46 -1.18 16 16 N -0.94 -61.06 13.63 21.45 0.29 -60.77 16 17 Si 1.10 55.15 29.91 68.60 2.05 57.20 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 21 C -0.05 -2.52 4.63 -19.86 -0.09 -2.61 16 22 C -0.12 -5.02 8.89 22.27 0.20 -4.82 16 23 C -0.12 -4.16 10.05 22.27 0.22 -3.93 16 24 C -0.14 -4.53 10.05 22.27 0.22 -4.31 16 25 C -0.12 -4.45 10.05 22.27 0.22 -4.22 16 26 C -0.15 -6.68 9.34 22.27 0.21 -6.47 16 27 C 0.11 2.29 7.84 83.09 0.65 2.94 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.69 7.65 -2.39 -0.02 0.67 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.38 4.27 7.26 -74.06 -0.54 3.73 16 35 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.10 1.80 6.46 -2.39 -0.02 1.79 16 37 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.09 3.53 7.90 -2.39 -0.02 3.51 16 39 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.26 16.88 6.32 -92.71 -0.59 16.30 16 41 H 0.11 4.52 7.82 -2.91 -0.02 4.50 16 42 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 43 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 44 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 45 H 0.09 4.27 7.95 -2.91 -0.02 4.25 16 46 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.10 1.97 7.07 -2.39 -0.02 1.96 16 Total: -1.00 -80.88 381.90 2.89 -77.99 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.60 Total: 23.72 kcal Atomic # 6 Polarization: -37.21 SS G_CDS: 4.90 Total: -32.31 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -2.88 Total: -84.91 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.78 Total: -41.69 kcal Atomic # 14 Polarization: 55.15 SS G_CDS: 2.05 Total: 57.20 kcal Total: -80.88 2.89 -77.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332450482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.422 kcal (2) G-P(sol) polarization free energy of solvation -80.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds