Wall clock time and date at job start Tue Mar 31 2020 13:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46959 * 2 1 4 4 O 1.42896 * 109.46973 * 239.99941 * 2 1 3 5 5 C 1.52999 * 109.46803 * 120.00127 * 2 1 3 6 6 C 1.53946 * 113.74300 * 65.39744 * 5 2 1 7 7 N 1.47584 * 86.11567 * 137.95148 * 6 5 2 8 8 C 1.34777 * 134.49155 * 155.36043 * 7 6 5 9 9 O 1.21282 * 119.99878 * 0.02562 * 8 7 6 10 10 C 1.50702 * 119.99857 * 179.97438 * 8 7 6 11 11 C 1.53000 * 109.47068 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47045 * 305.00632 * 11 10 8 13 13 C 1.50708 * 109.46978 * 65.00086 * 11 10 8 14 14 H 1.07998 * 119.99706 * 34.12478 * 13 11 10 15 15 C 1.37875 * 119.99735 * 214.11631 * 13 11 10 16 16 N 1.31511 * 120.00519 * 354.04976 * 15 13 11 17 17 Si 1.86797 * 119.99477 * 174.04114 * 15 13 11 18 18 H 1.48499 * 109.47618 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46996 * 120.00356 * 17 15 13 20 20 H 1.48505 * 109.47346 * 240.00066 * 17 15 13 21 21 C 1.50692 * 109.47245 * 185.00140 * 11 10 8 22 22 C 1.38236 * 120.00507 * 298.95999 * 21 11 10 23 23 C 1.38228 * 120.00451 * 179.78972 * 22 21 11 24 24 C 1.38234 * 119.99910 * 0.43700 * 23 22 21 25 25 C 1.38235 * 120.00243 * 359.81328 * 24 23 22 26 26 C 1.38239 * 119.99694 * 359.97438 * 25 24 23 27 27 C 1.47583 * 91.01523 * 335.35875 * 7 6 5 28 28 H 1.09001 * 109.47322 * 300.00003 * 1 2 3 29 29 H 1.09004 * 109.46823 * 60.00036 * 1 2 3 30 30 H 1.08999 * 109.47294 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46834 * 183.96878 * 3 2 1 32 32 H 1.08997 * 109.47208 * 303.97115 * 3 2 1 33 33 H 1.08997 * 109.46753 * 63.97520 * 3 2 1 34 34 H 0.96703 * 113.99657 * 179.97438 * 4 2 1 35 35 H 1.08996 * 113.01951 * 293.73237 * 5 2 1 36 36 H 1.08997 * 113.76630 * 252.25179 * 6 5 2 37 37 H 1.08995 * 113.76811 * 23.64809 * 6 5 2 38 38 H 1.08998 * 109.47462 * 300.00055 * 10 8 7 39 39 H 1.09003 * 109.47096 * 60.00387 * 10 8 7 40 40 H 0.97001 * 120.00298 * 180.02562 * 16 15 13 41 41 H 1.08006 * 119.98982 * 359.97438 * 22 21 11 42 42 H 1.08004 * 120.00105 * 180.27210 * 23 22 21 43 43 H 1.07999 * 120.00161 * 179.83910 * 24 23 22 44 44 H 1.07995 * 120.00355 * 180.02562 * 25 24 23 45 45 H 1.07994 * 120.00068 * 179.97438 * 26 25 24 46 46 H 1.09001 * 113.76806 * 270.33976 * 27 7 6 47 47 H 1.09001 * 113.76940 * 138.93954 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7213 1.2492 6 6 1.6934 -2.2208 1.2840 7 7 3.0677 -2.4242 1.7821 8 6 3.6745 -3.3768 2.5176 9 8 3.0410 -4.3320 2.9142 10 6 5.1402 -3.2556 2.8461 11 6 5.5760 -4.4584 3.6852 12 1 4.9383 -4.5374 4.5656 13 6 5.4544 -5.7153 2.8625 14 1 5.6482 -5.6863 1.8005 15 6 5.0959 -6.9021 3.4658 16 7 4.9742 -6.9644 4.7738 17 14 4.7828 -8.4214 2.4252 18 1 4.9853 -8.0902 0.9919 19 1 5.7269 -9.4966 2.8225 20 1 3.3877 -8.8857 2.6341 21 6 7.0083 -4.2773 4.1170 22 6 8.0086 -4.1747 3.1683 23 6 9.3219 -4.0042 3.5643 24 6 9.6363 -3.9453 4.9092 25 6 8.6368 -4.0531 5.8580 26 6 7.3228 -4.2192 5.4619 27 6 3.5107 -1.1657 1.1514 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1277 1.4433 -0.0711 32 1 1.6197 1.9765 -0.8522 33 1 1.7360 1.9353 0.9235 34 1 2.9703 -0.7115 -1.2330 35 1 1.8013 -0.1942 2.1730 36 1 0.9209 -2.4765 2.0093 37 1 1.5144 -2.6533 0.2997 38 1 5.7185 -3.2277 1.9226 39 1 5.3116 -2.3386 3.4099 40 1 4.7223 -7.7995 5.1983 41 1 7.7634 -4.2248 2.1177 42 1 10.1028 -3.9196 2.8230 43 1 10.6627 -3.8147 5.2186 44 1 8.8822 -4.0067 6.9086 45 1 6.5419 -4.3039 6.2031 46 1 3.8654 -1.2882 0.1281 47 1 4.1890 -0.5788 1.7708 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332450486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:49 Heat of formation + Delta-G solvation = -32.437041 kcal Electronic energy + Delta-G solvation = -26840.063039 eV Core-core repulsion = 23181.736744 eV Total energy + Delta-G solvation = -3658.326296 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.51429 -38.61277 -37.89558 -36.20776 -33.92936 -32.60673 -31.45643 -30.00094 -29.52317 -28.11395 -27.89074 -25.94186 -25.19715 -23.11126 -22.19786 -21.57271 -20.16364 -19.58941 -18.49149 -17.23893 -16.64378 -16.29429 -15.83980 -15.56872 -15.30860 -14.73950 -14.33196 -14.16744 -13.96506 -13.82218 -13.52440 -13.07305 -12.69122 -12.64947 -12.52154 -12.44785 -12.35129 -12.29492 -11.95298 -11.85995 -11.83783 -11.58581 -11.57307 -11.17077 -10.86214 -10.69028 -10.58047 -10.52735 -10.23773 -10.13939 -10.04530 -9.41876 -9.04662 -8.82914 -8.31770 -8.19642 -8.03308 -7.59113 -5.91843 -3.91080 2.30049 2.35784 3.20625 3.38967 3.46423 3.48861 3.54952 3.96123 4.15427 4.53883 4.58859 4.65208 4.76316 4.90351 4.96487 5.11399 5.30330 5.34945 5.41720 5.49012 5.50219 5.56625 5.60907 5.67085 5.71948 5.73863 5.80452 5.85077 5.85338 6.00077 6.10580 6.14215 6.23595 6.26230 6.37832 6.43145 6.54989 6.82917 6.93741 7.06875 7.32253 7.44234 7.45591 7.55599 7.87892 7.96418 8.06402 8.24727 8.39675 9.07270 9.09379 9.70878 11.18408 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012433 B = 0.003827 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.567946 B = 7313.831638 C = 8794.058318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.135 3.865 3 C -0.176 4.176 4 O -0.557 6.557 5 C -0.152 4.152 6 C 0.116 3.884 7 N -0.657 5.657 8 C 0.536 3.464 9 O -0.492 6.492 10 C -0.114 4.114 11 C 0.079 3.921 12 H 0.072 0.928 13 C -0.491 4.491 14 H 0.050 0.950 15 C 0.078 3.922 16 N -0.881 5.881 17 Si 0.887 3.113 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.284 1.284 21 C -0.020 4.020 22 C -0.117 4.117 23 C -0.132 4.132 24 C -0.156 4.156 25 C -0.128 4.128 26 C -0.117 4.117 27 C 0.106 3.894 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.375 0.625 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.258 0.742 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.114 0.886 46 H 0.076 0.924 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 17.495 -6.827 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.094 3.906 3 C -0.234 4.234 4 O -0.365 6.365 5 C -0.171 4.171 6 C -0.007 4.007 7 N -0.398 5.398 8 C 0.326 3.674 9 O -0.362 6.362 10 C -0.154 4.154 11 C 0.060 3.940 12 H 0.090 0.910 13 C -0.529 4.529 14 H 0.069 0.931 15 C -0.125 4.125 16 N -0.518 5.518 17 Si 0.716 3.284 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.210 1.210 21 C -0.021 4.021 22 C -0.135 4.135 23 C -0.150 4.150 24 C -0.174 4.174 25 C -0.146 4.146 26 C -0.135 4.135 27 C -0.018 4.018 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.224 0.776 35 H 0.125 0.875 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.132 0.868 46 H 0.094 0.906 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.184 16.548 -6.401 18.026 hybrid contribution 0.612 -0.964 -0.442 1.224 sum -2.572 15.585 -6.843 17.214 Atomic orbital electron populations 1.21727 0.92370 1.03137 1.02303 1.21072 0.95015 0.90390 0.84126 1.22462 1.01666 0.96483 1.02773 1.86586 1.26889 1.79513 1.43497 1.23939 0.96579 0.96891 0.99677 1.22966 0.86407 0.91852 0.99479 1.50234 1.11560 1.23969 1.53997 1.20702 0.89835 0.79900 0.77000 1.90771 1.65808 1.28709 1.50962 1.21745 0.90991 1.01075 1.01606 1.17857 0.88127 0.91066 0.96958 0.91030 1.20715 1.46349 0.92397 0.93400 0.93148 1.24805 0.94336 0.98660 0.94673 1.69915 1.47224 1.26278 1.08409 0.86626 0.77822 0.83276 0.80726 1.19961 1.21344 1.21001 1.20723 0.98451 0.90745 0.92178 1.20930 0.92218 1.00921 0.99462 1.20961 0.96329 1.02242 0.95460 1.20789 0.98075 1.05091 0.93465 1.20989 0.93582 1.01738 0.98309 1.21092 0.95666 1.00434 0.96331 1.23034 0.96033 0.84821 0.97888 0.91109 0.91923 0.91584 0.92115 0.91837 0.91475 0.77620 0.87549 0.90741 0.89797 0.90717 0.91893 0.93183 0.87028 0.87686 0.87814 0.87636 0.86763 0.90616 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.70 37.16 0.32 -0.76 16 2 C 0.14 1.10 0.97 -90.62 -0.09 1.01 16 3 C -0.18 -1.13 8.76 37.16 0.33 -0.80 16 4 O -0.56 -5.27 12.12 -35.23 -0.43 -5.69 16 5 C -0.15 -1.45 3.21 -89.69 -0.29 -1.73 16 6 C 0.12 1.55 7.57 -2.97 -0.02 1.53 16 7 N -0.66 -10.49 3.61 -178.35 -0.64 -11.13 16 8 C 0.54 11.30 7.81 -10.98 -0.09 11.22 16 9 O -0.49 -12.97 15.71 5.56 0.09 -12.88 16 10 C -0.11 -2.28 4.67 -27.88 -0.13 -2.41 16 11 C 0.08 1.93 1.67 -92.92 -0.16 1.77 16 12 H 0.07 2.01 6.97 -51.93 -0.36 1.64 16 13 C -0.49 -13.49 6.47 -34.44 -0.22 -13.72 16 14 H 0.05 1.39 7.82 -52.49 -0.41 0.98 16 15 C 0.08 2.26 5.45 -17.82 -0.10 2.16 16 16 N -0.88 -26.29 12.87 55.43 0.71 -25.58 16 17 Si 0.89 22.76 29.54 -169.99 -5.02 17.73 16 18 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 20 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 21 C -0.02 -0.46 4.77 -104.63 -0.50 -0.95 16 22 C -0.12 -2.38 8.86 -39.59 -0.35 -2.73 16 23 C -0.13 -2.37 10.05 -39.59 -0.40 -2.77 16 24 C -0.16 -2.74 10.05 -39.58 -0.40 -3.13 16 25 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 26 C -0.12 -2.51 9.67 -39.58 -0.38 -2.90 16 27 C 0.11 1.13 7.93 -2.97 -0.02 1.10 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.58 7.63 -51.93 -0.40 0.18 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.37 2.61 6.84 45.56 0.31 2.92 16 35 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.14 7.60 -51.93 -0.39 0.75 16 38 H 0.07 1.39 7.63 -51.93 -0.40 1.00 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.11 2.18 7.68 -52.48 -0.40 1.78 16 42 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 43 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 44 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 45 H 0.11 2.50 7.95 -52.49 -0.42 2.08 16 46 H 0.08 0.67 5.99 -51.93 -0.31 0.36 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 383.68 15.07 5.78 5.78 Total: -1.00 -34.22 383.68 -9.39 -43.61 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.99 Total: 4.08 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -2.89 Total: -15.91 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.07 Total: -36.71 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.34 Total: -18.57 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.22 -9.39 -43.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332450486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.168 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds