Wall clock time and date at job start Tue Mar 31 2020 13:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46959 * 2 1 4 4 O 1.42896 * 109.46973 * 239.99941 * 2 1 3 5 5 C 1.52999 * 109.46803 * 120.00127 * 2 1 3 6 6 C 1.53946 * 113.74300 * 65.39744 * 5 2 1 7 7 N 1.47584 * 86.11567 * 137.95148 * 6 5 2 8 8 C 1.34777 * 134.49155 * 155.36043 * 7 6 5 9 9 O 1.21282 * 119.99878 * 0.02562 * 8 7 6 10 10 C 1.50702 * 119.99857 * 179.97438 * 8 7 6 11 11 C 1.53000 * 109.47068 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47045 * 305.00632 * 11 10 8 13 13 C 1.50708 * 109.46978 * 65.00086 * 11 10 8 14 14 H 1.07998 * 119.99706 * 34.12478 * 13 11 10 15 15 C 1.37875 * 119.99735 * 214.11631 * 13 11 10 16 16 N 1.31511 * 120.00519 * 354.04976 * 15 13 11 17 17 Si 1.86797 * 119.99477 * 174.04114 * 15 13 11 18 18 H 1.48499 * 109.47618 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46996 * 120.00356 * 17 15 13 20 20 H 1.48505 * 109.47346 * 240.00066 * 17 15 13 21 21 C 1.50692 * 109.47245 * 185.00140 * 11 10 8 22 22 C 1.38236 * 120.00507 * 298.95999 * 21 11 10 23 23 C 1.38228 * 120.00451 * 179.78972 * 22 21 11 24 24 C 1.38234 * 119.99910 * 0.43700 * 23 22 21 25 25 C 1.38235 * 120.00243 * 359.81328 * 24 23 22 26 26 C 1.38239 * 119.99694 * 359.97438 * 25 24 23 27 27 C 1.47583 * 91.01523 * 335.35875 * 7 6 5 28 28 H 1.09001 * 109.47322 * 300.00003 * 1 2 3 29 29 H 1.09004 * 109.46823 * 60.00036 * 1 2 3 30 30 H 1.08999 * 109.47294 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46834 * 183.96878 * 3 2 1 32 32 H 1.08997 * 109.47208 * 303.97115 * 3 2 1 33 33 H 1.08997 * 109.46753 * 63.97520 * 3 2 1 34 34 H 0.96703 * 113.99657 * 179.97438 * 4 2 1 35 35 H 1.08996 * 113.01951 * 293.73237 * 5 2 1 36 36 H 1.08997 * 113.76630 * 252.25179 * 6 5 2 37 37 H 1.08995 * 113.76811 * 23.64809 * 6 5 2 38 38 H 1.08998 * 109.47462 * 300.00055 * 10 8 7 39 39 H 1.09003 * 109.47096 * 60.00387 * 10 8 7 40 40 H 0.97001 * 120.00298 * 180.02562 * 16 15 13 41 41 H 1.08006 * 119.98982 * 359.97438 * 22 21 11 42 42 H 1.08004 * 120.00105 * 180.27210 * 23 22 21 43 43 H 1.07999 * 120.00161 * 179.83910 * 24 23 22 44 44 H 1.07995 * 120.00355 * 180.02562 * 25 24 23 45 45 H 1.07994 * 120.00068 * 179.97438 * 26 25 24 46 46 H 1.09001 * 113.76806 * 270.33976 * 27 7 6 47 47 H 1.09001 * 113.76940 * 138.93954 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7213 1.2492 6 6 1.6934 -2.2208 1.2840 7 7 3.0677 -2.4242 1.7821 8 6 3.6745 -3.3768 2.5176 9 8 3.0410 -4.3320 2.9142 10 6 5.1402 -3.2556 2.8461 11 6 5.5760 -4.4584 3.6852 12 1 4.9383 -4.5374 4.5656 13 6 5.4544 -5.7153 2.8625 14 1 5.6482 -5.6863 1.8005 15 6 5.0959 -6.9021 3.4658 16 7 4.9742 -6.9644 4.7738 17 14 4.7828 -8.4214 2.4252 18 1 4.9853 -8.0902 0.9919 19 1 5.7269 -9.4966 2.8225 20 1 3.3877 -8.8857 2.6341 21 6 7.0083 -4.2773 4.1170 22 6 8.0086 -4.1747 3.1683 23 6 9.3219 -4.0042 3.5643 24 6 9.6363 -3.9453 4.9092 25 6 8.6368 -4.0531 5.8580 26 6 7.3228 -4.2192 5.4619 27 6 3.5107 -1.1657 1.1514 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1277 1.4433 -0.0711 32 1 1.6197 1.9765 -0.8522 33 1 1.7360 1.9353 0.9235 34 1 2.9703 -0.7115 -1.2330 35 1 1.8013 -0.1942 2.1730 36 1 0.9209 -2.4765 2.0093 37 1 1.5144 -2.6533 0.2997 38 1 5.7185 -3.2277 1.9226 39 1 5.3116 -2.3386 3.4099 40 1 4.7223 -7.7995 5.1983 41 1 7.7634 -4.2248 2.1177 42 1 10.1028 -3.9196 2.8230 43 1 10.6627 -3.8147 5.2186 44 1 8.8822 -4.0067 6.9086 45 1 6.5419 -4.3039 6.2031 46 1 3.8654 -1.2882 0.1281 47 1 4.1890 -0.5788 1.7708 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332450486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:48 Heat of formation + Delta-G solvation = -54.683570 kcal Electronic energy + Delta-G solvation = -26841.027721 eV Core-core repulsion = 23181.736744 eV Total energy + Delta-G solvation = -3659.290978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.57870 -40.12194 -39.29251 -37.29585 -35.77455 -33.50071 -33.27215 -31.50995 -30.95535 -29.48915 -28.55187 -27.37680 -26.58897 -24.61927 -23.41523 -23.05321 -21.38236 -20.81049 -19.78634 -18.52902 -18.30360 -17.72830 -17.22112 -16.77490 -16.43460 -16.29800 -15.86775 -15.59111 -15.36298 -15.27732 -14.38967 -14.36528 -14.21122 -13.94881 -13.81680 -13.57012 -13.52221 -13.25655 -13.12833 -13.11568 -12.93045 -12.89657 -12.74610 -12.53562 -12.49043 -12.46993 -12.02403 -11.83656 -11.70439 -11.38130 -11.33336 -10.99462 -10.92269 -10.59181 -10.30035 -9.54479 -9.52066 -9.19738 -8.07338 -6.09651 0.77611 0.83679 1.31209 1.35697 1.42828 1.87101 2.04285 2.43130 3.17418 3.23627 3.33442 3.39062 3.71608 3.83524 4.08551 4.16630 4.24105 4.31953 4.35735 4.39587 4.44893 4.51605 4.53135 4.57255 4.61229 4.65595 4.72532 4.84960 4.89462 4.93893 4.96718 5.00410 5.04997 5.13758 5.23360 5.28901 5.38398 5.39410 5.43090 5.52659 5.62048 5.76253 5.83478 5.95119 6.16294 6.39676 6.45763 6.85374 6.88651 6.98403 7.49923 7.53680 9.02619 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012433 B = 0.003827 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.567946 B = 7313.831638 C = 8794.058318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.139 3.861 3 C -0.172 4.172 4 O -0.574 6.574 5 C -0.127 4.127 6 C 0.104 3.896 7 N -0.661 5.661 8 C 0.528 3.472 9 O -0.564 6.564 10 C -0.104 4.104 11 C 0.082 3.918 12 H 0.021 0.979 13 C -0.484 4.484 14 H 0.045 0.955 15 C 0.023 3.977 16 N -0.917 5.917 17 Si 0.935 3.065 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.293 1.293 21 C -0.045 4.045 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.147 4.147 25 C -0.128 4.128 26 C -0.143 4.143 27 C 0.105 3.895 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.385 0.615 35 H 0.118 0.882 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.254 0.746 41 H 0.115 0.885 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.131 0.869 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.215 20.202 -8.411 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.098 3.902 3 C -0.229 4.229 4 O -0.383 6.383 5 C -0.146 4.146 6 C -0.018 4.018 7 N -0.399 5.399 8 C 0.319 3.681 9 O -0.441 6.441 10 C -0.144 4.144 11 C 0.063 3.937 12 H 0.040 0.960 13 C -0.522 4.522 14 H 0.063 0.937 15 C -0.176 4.176 16 N -0.557 5.557 17 Si 0.762 3.238 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.220 1.220 21 C -0.045 4.045 22 C -0.146 4.146 23 C -0.143 4.143 24 C -0.165 4.165 25 C -0.146 4.146 26 C -0.161 4.161 27 C -0.017 4.017 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.235 0.765 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.133 0.867 42 H 0.160 0.840 43 H 0.163 0.837 44 H 0.149 0.851 45 H 0.109 0.891 46 H 0.118 0.882 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.691 19.329 -8.043 20.947 hybrid contribution -0.146 -1.659 0.009 1.665 sum -0.837 17.670 -8.034 19.429 Atomic orbital electron populations 1.21790 0.92400 1.02450 1.03308 1.21100 0.95052 0.91273 0.82745 1.22416 1.02345 0.94678 1.03468 1.86582 1.27977 1.79875 1.43906 1.23817 0.95412 0.94133 1.01233 1.23176 0.84902 0.95071 0.98668 1.50263 1.13077 1.24071 1.52442 1.20876 0.90121 0.79881 0.77244 1.90734 1.67198 1.31976 1.54169 1.21576 0.90775 1.00171 1.01877 1.17625 0.89078 0.91809 0.95197 0.96048 1.20991 1.44462 0.93520 0.93247 0.93712 1.25482 0.95208 1.01335 0.95548 1.70052 1.49529 1.26416 1.09667 0.85868 0.77167 0.80912 0.79861 1.19091 1.20429 1.21985 1.20517 0.97538 0.93312 0.93182 1.21021 0.92988 1.01484 0.99125 1.21370 0.95961 1.00182 0.96741 1.21270 0.99595 1.02667 0.92922 1.21285 0.92433 1.00612 1.00272 1.21084 0.96866 1.02403 0.95751 1.23453 0.97243 0.81887 0.99099 0.89595 0.91513 0.93148 0.91013 0.91606 0.90440 0.76452 0.86392 0.92188 0.90052 0.88916 0.89417 0.93743 0.86693 0.83963 0.83748 0.85062 0.89072 0.88181 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.70 71.98 0.63 -1.37 16 2 C 0.14 1.92 0.97 -10.79 -0.01 1.91 16 3 C -0.17 -1.58 8.76 71.98 0.63 -0.95 16 4 O -0.57 -9.56 12.12 -148.98 -1.81 -11.36 16 5 C -0.13 -2.15 3.21 -10.13 -0.03 -2.19 16 6 C 0.10 2.80 7.57 86.48 0.65 3.45 16 7 N -0.66 -20.94 3.61 -836.57 -3.02 -23.96 16 8 C 0.53 23.02 7.81 87.66 0.68 23.70 16 9 O -0.56 -31.69 15.71 -3.04 -0.05 -31.74 16 10 C -0.10 -4.22 4.67 29.85 0.14 -4.08 16 11 C 0.08 4.18 1.67 -12.29 -0.02 4.16 16 12 H 0.02 1.29 6.97 -2.39 -0.02 1.27 16 13 C -0.48 -27.59 6.47 25.60 0.17 -27.43 16 14 H 0.04 2.52 7.82 -2.91 -0.02 2.50 16 15 C 0.02 1.37 5.45 84.65 0.46 1.83 16 16 N -0.92 -57.87 12.87 21.45 0.28 -57.60 16 17 Si 0.93 48.26 29.54 68.60 2.03 50.29 16 18 H -0.27 -13.21 7.11 99.48 0.71 -12.51 16 19 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 20 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16 21 C -0.04 -2.04 4.77 -19.87 -0.09 -2.14 16 22 C -0.13 -5.01 8.86 22.27 0.20 -4.81 16 23 C -0.12 -4.02 10.05 22.27 0.22 -3.80 16 24 C -0.15 -4.54 10.05 22.27 0.22 -4.32 16 25 C -0.13 -4.54 10.05 22.27 0.22 -4.32 16 26 C -0.14 -6.26 9.67 22.27 0.22 -6.04 16 27 C 0.10 1.95 7.93 86.48 0.69 2.63 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.05 0.86 7.63 -2.39 -0.02 0.84 16 31 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.38 4.25 6.84 -74.05 -0.51 3.74 16 35 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 2.24 7.60 -2.39 -0.02 2.22 16 38 H 0.09 3.38 7.63 -2.39 -0.02 3.36 16 39 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.12 4.32 7.68 -2.91 -0.02 4.29 16 42 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 43 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 44 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 45 H 0.09 4.29 7.95 -2.91 -0.02 4.26 16 46 H 0.10 1.43 5.99 -2.39 -0.01 1.42 16 47 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -80.53 383.68 2.85 -77.68 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.44 Total: 20.44 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 4.97 Total: -23.74 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -2.74 Total: -81.56 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -1.85 Total: -43.10 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.29 kcal Total: -80.53 2.85 -77.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332450486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.992 kcal (2) G-P(sol) polarization free energy of solvation -80.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds